The advancements in classical computational components such as CPUs and GPUs have had a reverberating impact on the democratization of computational power available, with the field of computational chemistry reaping significant benefits from the propulsion of the limits of systems studied. The accurate prediction of chemical properties and reaction dynamics through computational simulation is now a centerpiece of modern chemical research, significantly accelerating discoveries research areas of materials science and drug development, as well as industrially relevant processes such as the emission of aldehydes from soft foams, flame retardants and pyrolysis and the carbonylation of epoxides. These achievements of computational chemistry still are overshadowed in the face of fundamental bottlenecks where classical methods remain constrained by the exponential scaling when treating large and/or strongly correlated quantum many-body systems. This innate computational complexity often constitutes chemically accurate calculations based on first principles impractical, or plain impossible, for systems beyond modest sizes. Quantum computing offers a potential pathway around these limitations, originally formally formulated by David Deutsch as a tool for simulating quantum systems, with the first quantum algorithms indicating speed-ups compared to classical counterparts arising from Peter Shor and Lov Grover for the prime factorization of an integer number and unstructured search respectively. Relying on fundamental theorems by Claude Shannon, it has been demonstrated that through the use of error-correcting codes fault-tolerant quantum computers are able to safeguard information against noise and decoherence, strongly indicating towards exponential speedups in solving central computational chemistry problems, such as determining ground state energies or reaction pathways of chemical systems. Substantial strides in experimental quantum computing over the past decade, including proof-of-principle demonstrations of quantum error correction, mean to bring full-scale fault-tolerant quantum computing within the grasp of humanity. The breakthroughs needed to attain scalable, error-corrected quantum computation with capabilities exceeding those of classical methods in real-world scenarios is likely still some years away. While striving to address the engineering challenges standing in the way of achieving fault tolerant quantum computing, substantial effort has been focused toward developing and benchmarking hybrid algorithms tailored for the Noisy Intermediate- Scale Quantum (NISQ) devices, available now to researchers. These hybrid quantum-classical algorithms, with the most notable being the Variational Quantum Eigensolver (VQE), allow the probing of quantum computing’s utility in computational chemistry even in the face of significant hardware noise and limited coherence times. The work presented in this thesis introduces several key additions the VQE framework, geared especially towards to NISQ hardware, where the mindful use of available resources is imperative. First, the implementation of the Conjugate Model Search optimizer is described, an optimization method that integrates simple models that are surrogate to the original function, combined with conjugate gradient optimization to navigate effectively parameter landscapes typical of variational algorithms, prone to noise. Second, this thesis contains the proposal and extensive study of a hyperparameter tuning procedure employing genetic algorithms, allowing for comprehensive simulation benchmarks that augment the robustness and efficiency of VQE implementations with respect to convergence time through real wall-time models of quantum processors. Continuing, a bridge is presented between quantum simulation and quantum chemistry, through qubit-to-fermion mappings of existing quantum gates, further enabling the direct and accurate modeling of chemical systems on trapped atom quantum hardware with the added arsenal provided by techniques designed for qubit architectures. Additionally, experimental data contained in this thesis include detailed benchmarking data collected from state-of-the-art trapped ion quantum processors available at the Johannes Gutenberg Universität Mainz, demonstrating the actual viability and performance of various methodologies for extracting results. Lastly, the state of VQE is examined, as it served as a springboard for a plethora of advancements in the development of quantum computing hardware, as well as the direction the field of simulation of computational quantum chemistry via quantum devices is headed towards in the coming years.
The advancements in classical computational components such as CPUs and GPUs have had a reverberating impact on the democratization of computational power available, with the field of computational chemistry reaping significant benefits from the propulsion of the limits of systems studied. The accurate prediction of chemical properties and reaction dynamics through computational simulation is now a centerpiece of modern chemical research, significantly accelerating discoveries research areas of materials science and drug development, as well as industrially relevant processes such as the emission of aldehydes from soft foams, flame retardants and pyrolysis and the carbonylation of epoxides. These achievements of computational chemistry still are overshadowed in the face of fundamental bottlenecks where classical methods remain constrained by the exponential scaling when treating large and/or strongly correlated quantum many-body systems. This innate computational complexity often constitutes chemically accurate calculations based on first principles impractical, or plain impossible, for systems beyond modest sizes. Quantum computing offers a potential pathway around these limitations, originally formally formulated by David Deutsch as a tool for simulating quantum systems, with the first quantum algorithms indicating speed-ups compared to classical counterparts arising from Peter Shor and Lov Grover for the prime factorization of an integer number and unstructured search respectively. Relying on fundamental theorems by Claude Shannon, it has been demonstrated that through the use of error-correcting codes fault-tolerant quantum computers are able to safeguard information against noise and decoherence, strongly indicating towards exponential speedups in solving central computational chemistry problems, such as determining ground state energies or reaction pathways of chemical systems. Substantial strides in experimental quantum computing over the past decade, including proof-of-principle demonstrations of quantum error correction, mean to bring full-scale fault-tolerant quantum computing within the grasp of humanity. The breakthroughs needed to attain scalable, error-corrected quantum computation with capabilities exceeding those of classical methods in real-world scenarios is likely still some years away. While striving to address the engineering challenges standing in the way of achieving fault tolerant quantum computing, substantial effort has been focused toward developing and benchmarking hybrid algorithms tailored for the Noisy Intermediate- Scale Quantum (NISQ) devices, available now to researchers. These hybrid quantum-classical algorithms, with the most notable being the Variational Quantum Eigensolver (VQE), allow the probing of quantum computing’s utility in computational chemistry even in the face of significant hardware noise and limited coherence times. The work presented in this thesis introduces several key additions the VQE framework, geared especially towards to NISQ hardware, where the mindful use of available resources is imperative. First, the implementation of the Conjugate Model Search optimizer is described, an optimization method that integrates simple models that are surrogate to the original function, combined with conjugate gradient optimization to navigate effectively parameter landscapes typical of variational algorithms, prone to noise. Second, this thesis contains the proposal and extensive study of a hyperparameter tuning procedure employing genetic algorithms, allowing for comprehensive simulation benchmarks that augment the robustness and efficiency of VQE implementations with respect to convergence time through real wall-time models of quantum processors. Continuing, a bridge is presented between quantum simulation and quantum chemistry, through qubit-to-fermion mappings of existing quantum gates, further enabling the direct and accurate modeling of chemical systems on trapped atom quantum hardware with the added arsenal provided by techniques designed for qubit architectures. Additionally, experimental data contained in this thesis include detailed benchmarking data collected from state-of-the-art trapped ion quantum processors available at the Johannes Gutenberg Universität Mainz, demonstrating the actual viability and performance of various methodologies for extracting results. Lastly, the state of VQE is examined, as it served as a springboard for a plethora of advancements in the development of quantum computing hardware, as well as the direction the field of simulation of computational quantum chemistry via quantum devices is headed towards in the coming years.
Quantum chemistry plays a crucial role in advancing fundamental understanding of chemical processes and driving innovation in energy, medicine, and materials science. Recent progress in quantum computing has opened new possibilities for molecular simulations that are beyond the practical limits of classical approaches. Academic studies have demonstrated hybrid Density Functional Theory (DFT) and Variational Quantum Eigensolver (VQE) benchmarks on small transition-metal systems, such as iron porphyrin and heme analogues, using current noisy intermediate-scale quantum (NISQ) hardware. Although full-scale simulations of complex biological systems such as the complete Cytochrome P450 (CYP450) active site remain a long-term goal due to limitations in qubit numbers, coherence times, and error correction, the underlying methodologies are now well established. At present, quantum chemistry applications in drug discovery remain largely experimental, and widespread practical medical impact is expected to require further technological advances over the next 5–10 years. Nevertheless, quantum software and algorithm development for chemical applications is progressing rapidly. This perspective summarizes recent advances in quantum computing algorithms, hardware, and software relevant to chemistry, and critically discusses the remaining challenges and opportunities for applying quantum computing to chemical problems, with particular emphasis on drug discovery and development.
In ab-initio quantum chemistry, solving the electronic structure problem of a molecular system of interest to obtain an approximation of the ground and, in some cases, the excited state energies is a core and central task in various quantum chemistry processes. These include, but certainly not limited to, the calculation of the activation energy–that is the minimal energy required to launch a given chemical reaction–, the dipole and multipole moments which describe the polarity of the molecule, performing the optimization of the geometry of the molecule and searching for transition states. Furthermore, many quantum chemistry applications are predicated, not merely on the approximation of the ground state energy, but also on the corresponding first order derivatives. The body of literature of classical algorithms approximating the ground state energy and its first order derivative is extensively rich with a plethora of methods such as self-consistent mean-field methods, coupled-cluster methods, density matrix renormalization group and many more, each of which has intrinsic set of properties and characteristics that makes it suitable for specific tasks and cases. However, classical methods face a practically insurmountable challenge: the efficient computation of high accuracy approximation of ground state energies of large system sizes. This is fundamentally because the electronic structure problem provably belongs to the complexity class of QMA-hard problems. Which also means that it is out of reach for quantum algorithms as well in general. However, with certain assumptions that are expected to hold molecules of interest–that so far proved to be classically challenging because the required accuracy set by the standard of chemical accuracy threshold (generally held in quantum chemistry)– quantum algorithms can efficiently treat such cases. While originally theorized by Richard Feynmann as a potentially efficient way of simulating some classically intractable many-body systems, quantum computing has since proven to have a stronger and richer potential paving the way for the inception of new algorithms such as Shor’s algorithm for integer factorization, HHL for solving linear system of equation and Grover’s algorithm for constrained binary search, just to name a few. These algorithms provably exhibit an improvement rate that goes respectively exponentially and quadratically in the time complexity. Quantum chemistry is considered a prominent candidate to benefit from quantum computing given the variety of quantum algorithms put forth to solve the electronic structure problem of particular systems of interest. These quantum algorithm proposals can be broadly categorized in three main categories that span the spectrum: from noisy intermediate scale quantum (NISQ) computers to early and full scale fault tolerant quantum ((E)FTQC) computers. Firstly, the variational quantum eigensolver (VQE) family of quantum algorithms which variationally search for the ground state energy through the optimization of the energy of a parametrized state prepared in a quantum computer using an ansatz. Secondly, the quantum Krylov subspace diagonalization (QKSD) methods, which generate a subspace of the original Hilbert space and efficiently produce the lowest energy in said subspace as its output. Lastly, we have the quantum phase estimation (QPE) algorithms, which provably produce the ground state energy in Heisenberg scaling presenting hence a provable efficient solution. In this thesis, we firstly set to work on the problem of efficient Hamiltonian linear combination of unitaries (LCU) representation. This is mainly motivated by the wide-range impact an efficient compression of the Hamiltonian can potentially have on several quantum algorithms such as VQE, QPE...etc. We designed a method that efficiently compress the Hamiltonian representation in a way that is beneficially impactful across the set of the aforementioned quantum algorithms. Namely, we motivate and present in Sections 1.3 and 1.4 respectively, the regularized compressed double-factorization (RC-DF) and show how it reduces the energy measurement complexity both in terms of number of distinct observables and number of samples. Moreover, it also reduces the total depth of the quantum phase estimation circuit thanks to its low normalization factor. Secondly, given the importance of the energy derivatives, in Sections 2.1 and 2.2, we introduce and present an efficient quantum algorithm for the calculation of the analytic gradient of VQE energies of double-factorized Hamiltonians. Furthermore, in Section 2.1, we expand on the utility of RC-DF by presenting a quantum algorithm that determines the analytic gradient of energies measured with respect to RC-DF Hamiltonains. Third, in Section 3.1, we summarize the theoretical results of purification error-mitigation techniques, namely echo verification and virtual distillation. In Section 3.2, we report on the results of the experimental bench mark, of said techniques, performed on on Google’s Sycamore device to validate the theoretical scaling of error suppression and extrapolate the resources needed for classically intractable system sizes. Fourth, in Section 4 we establish the challenges of computing energy gradients in a quantum Krylov frame work. To overcome the problem, we provide, in Section 4.3, an efficient quantum algorithm for calculating energy derivative obtained through QKSD procedures. Our approach shows how the QKSD ground state can be prepared using quantum signal processing (QSP) and reduces the number of observables to O(1) per reduced density matrix (RDM). Lastly, in light of the importance of quantum RAMs due to their utility in a variety of quantum algorithms that require efficient initial state preparation, as explained in Section 5.5, we address the problematic exponential depth of the bucket-brigade QRAM (when decomposed). We present in Section 5.6 a very efficient Clifford+T decomposition of the bucket-brigade QRAM, which preserves the linear scaling of the depth of the circuit without introducing any additional ancilla.
Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.
Quantum chemistry models atoms and molecules using quantum mechanics, with the electronic structure problem at its core. This problem, which determines the energy and properties of electrons in a molecule, is exponentially hard to solve exactly on classical computers. To approximate solutions, effective models introduce layers of simplifications. However, these approximations can fail for strongly correlated systems, necessitating alternative approaches. Quantum computers, capable of processing quantum information natively, offer a promising path to simulate molecular systems beyond classical reach, with potential applications in catalysis, materials science, and photochemistry. Despite rapid advancements in quantum hardware, practical quantum computations remain challenging due to limited resources. This thesis optimizes quantum resource usage in computational chemistry, introducing novel embedding techniques and exploring applications beyond ground-state energies. Chapter 1 establishes the foundation by reviewing quantum chemistry methods, from Hartree-Fock and Density Functional Theory (DFT) to active space approaches. It also provides an introduction to quantum computing for chemistry, focusing on near-term algorithms. The following chapters present novel methods aimed at reducing quantum resource requirements and tackling problems classical methods struggle with. Chapter 2 introduces a technique to reduce the λ-norm of the electronic structure Hamiltonian, a key measure of quantum resource demand. By transforming molecular orbitals, this method enhances sampling efficiency in Noisy Intermediate-Scale Quantum (NISQ) algorithms and reduces runtime in Fault-Tolerant Quantum Computing (FTQC). Localized orbitals outperform canonical ones, and an orbital-optimization scheme is proposed to minimize the λ-norm. Benchmarks on hydrogen chains, FeMoco, and Ruthenium complexes demonstrate its effectiveness. Chapter 3 presents the FragPT2 framework for simulating large systems with multiple interacting fragments. This method embeds each fragment in the mean field of others and applies multi-reference perturbation theory to capture inter-fragment correlations such as dispersion and charge transfer efficiently. The approach reduces computational overhead and enables scalable simulations, as shown in applications to \ce{N2} dimers, aromatic dimers, and butadiene. Chapter 4 focuses on photochemical systems, where multiple electronic states must be treated equally. The state-averaged orbital-optimized variational quantum eigensolver (SAOOVQE) is extended with analytical energy gradients and non-adiabatic couplings, enabling geometry optimizations and simulations of non-adiabatic dynamics on quantum hardware. This is demonstrated by locating the conical intersection in formaldimine, highlighting SAOOVQE’s potential for studying photoisomerization in biomolecules. Building on this, Chapter 5 develops a quantum algorithm to detect conical intersections, where the Born-Oppenheimer approximation breaks down. These intersections are characterized by a discrete Berry phase (0 or π), representing their topological nature. The algorithm extracts this phase as a single bit of information, ensuring resilience to noise. Analytical proof and numerical validation using a toy molecular model illustrate its effectiveness for studying light-perception biochemistry and related photochemical processes. Finally, Chapter 6 explores machine learning density functionals trained on noisy quantum data. While DFT is computationally efficient, its accuracy depends on approximated exchange-correlation functionals. This work proposes a neural network-based approach to learn the exact functional from quantum data, showing that training on noisy outputs from NISQ devices can mitigate sampling errors. Applications to the Fermi-Hubbard model and other systems demonstrate its potential to generalize and provide accurate results under noise. This thesis advances quantum computational chemistry by optimizing quantum resource usage, developing new embedding strategies, and expanding the scope of quantum simulations beyond ground-state properties. These contributions pave the way for practical quantum algorithms that could revolutionize molecular simulations in the near future.
Quantum computing has emerged as a transformative paradigm, leveraging principles of quantum mechanics to tackle computationally intractable problems. This manuscript explores the potential of quantum computing for solving complex engineering problems—specifically optimization, simulation, and data analysis tasks—using technologies and methodologies available up to 2022. We examine both gate-based and quantum annealing approaches, outline experimental frameworks, and compare performance against classical counterparts. Results from simulated benchmark problems demonstrate promising speedups in select cases, though practical adoption is constrained by hardware limitations such as qubit coherence times and noise. The study concludes by highlighting avenues for integrating hybrid quantum-classical workflows in engineering, along with a discussion of current constraints and future directions. Over the past decade, research efforts have focused on understanding how quantum phenomena like superposition and entanglement can be harnessed to realize computational advantages for specific problem classes. In particular, combinatorial optimization problems—ubiquitous in engineering design and logistics—offer fertile ground for quantum algorithms such as the Quantum Approximate Optimization Algorithm (QAOA) and quantum annealing. Additionally, quantum simulation techniques, including the Variational Quantum Eigensolver (VQE), promise to accelerate the modeling of physical systems at the molecular and materials level, potentially informing the design of next-generation structural and functional materials. Beyond raw algorithmic performance, this paper carefully assesses the end‑to‑end workflow, accounting for overheads in problem encoding, error mitigation, and classical post‑processing. We also present a detailed analysis of resource utilization—quantified by qubit counts, circuit depths, and annealing schedules—highlighting trade‑offs between solution quality and execution time. Ultimately, our findings underscore that, while pure quantum speedups remain rare in 2022, hybrid approaches harnessing both quantum and classical resources can yield practical benefits for small‑to‑medium scale engineering tasks. This expanded evaluation provides a roadmap for researchers and practitioners interested in applying quantum computing to real‑world engineering challenges.
Early-stage decisions in the pharmaceutical development process carry outsized consequences for eventual clinical success, yet the computational tools underpinning these decisions remain fundamentally constrained. Computer-aided drug design (CADD) has transformed how researchers navigate chemical space and predict ligand–target interactions, but classical implementations rely on mechanical force-field approximations that fail to capture polarisation, charge transfer, and electron correlation effects central to molecular recognition and reactivity. Quantum-mechanical treatments that correctly describe these phenomena scale exponentially with system size on classical hardware, rendering them impractical for drug-relevant biomolecules. Quantum computing offers a physically motivated path beyond this scaling barrier: by exploiting superposition, entanglement, and interference, quantum algorithms can in principle simulate electronic structure with polynomial resource requirements for targeted problem classes. This article provides a theoretical review of how quantum computation integrates throughout the drug discovery pipeline, from target identification to lead optimisation. Its primary contribution is a pipeline-level mapping of quantum methods—including the Variational Quantum Eigensolver (VQE), quantum machine learning, and quantum-enhanced optimisation—to specific drug development stages. The review critically distinguishes near-term NISQ (Noisy Intermediate-Scale Quantum: current devices with 50–1,000 noisy qubits operating without full error correction) capabilities from fault-tolerant quantum computing (FTQC) requirements, quantifies current resource gaps through a worked CYP3A4 case study, and identifies algorithmic limitations (barren plateaus, ansatz expressibility, measurement overhead), hardware scalability, and error correction overhead as the principal barriers to practical deployment.