Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Log inSign up
Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Blog
Job Board
Q3AS

© 2026 Aqora Quantum S.A.S.

TermsPrivacyLegal Notice

IEEE Uttar Pradesh Section Women in Engineering International Conference on Electrical, Electronics and Computer Engineering (UPWIECON)

A Review of the Role of Quantum Computing in Simulating Molecular Interaction

Ayaann Kaalra, Abhinav Srivastava, Shashank Awasthi, Praveen Pachauri

Published Oct 30, 2025• 0 citations
Publisher

Abstract

However, accurately simulating molecular interactions constitutes the central, but open question of computer chemistry. This is a core task for efforts in drug development, catalyst design, and materials science. Most classical algorithms perform well on smaller systems, but incumbent exponential scaling penalties are unavoidable as models grow larger and more complex to describe quantum behaviour. An entirely new paradigm for this problem is now introduced by quantum computing: superposition and entanglement resources natively encode quantum states and model their electronic structures. The paper will thus take a high-level view of the leading quantum algorithms, with particular regard to those called Variational Quantum Eigensolver (VQE) and Quantum Phase Estimation (QPE), while evaluating their performance on today's Noisy Intermediate Scale Quantum (NISQ) devices. Next will follow discussions on algorithm design and current hardware capabilities, before which open challenges on scalability, error mitigation, and algorithm design will be outlined. Emphasis shall also be placed on the ethics and accessibility issues as well as the timelines with which quantum computing might gain a practical advantage. Linking together the recent advances and limitations, this paper posits how quantum computer implementation may change the face of chemical modelling and scientific discovery.

DOI
10.1109/upwiecon67212.2025.11390421

Related papers

Bridging Computational Chemistry and Quantum Computing for Next-Generation Drug Discovery & Development

Quantum chemistry plays a crucial role in advancing fundamental understanding of chemical processes and driving innovation in energy, medicine, and materials science. Recent progress in quantum computing has opened new possibilities for molecular simulations that are beyond the practical limits of classical approaches. Academic studies have demonstrated hybrid Density Functional Theory (DFT) and Variational Quantum Eigensolver (VQE) benchmarks on small transition-metal systems, such as iron porphyrin and heme analogues, using current noisy intermediate-scale quantum (NISQ) hardware. Although full-scale simulations of complex biological systems such as the complete Cytochrome P450 (CYP450) active site remain a long-term goal due to limitations in qubit numbers, coherence times, and error correction, the underlying methodologies are now well established. At present, quantum chemistry applications in drug discovery remain largely experimental, and widespread practical medical impact is expected to require further technological advances over the next 5–10 years. Nevertheless, quantum software and algorithm development for chemical applications is progressing rapidly. This perspective summarizes recent advances in quantum computing algorithms, hardware, and software relevant to chemistry, and critically discusses the remaining challenges and opportunities for applying quantum computing to chemical problems, with particular emphasis on drug discovery and development.

Scientiae Radices•Dec 30, 2025•0 citations

Quantum Computing in Molecular Science: Quantum Chemistry, Bioinformatics, and Machine Learning in the NISQ Era

Priya Vij, Sushree Sasmita Dash, Akanksha Mishra

Quantum computing is emerging as a transformative approach in bioinformatics and quantum chemistry, addressing fundamental computational limitations of classical methods in molecular science. Many biological and chemical systems are inherently governed by quantum mechanics, making accurate simulation with classical algorithms computationally expensive or infeasible. This review examines how quantum computing, particularly in the Noisy Intermediate-Scale Quantum (NISQ) era, is advancing molecular modeling, reaction dynamics, and bioinformatics applications. Key quantum algorithms, including the Variational Quantum Eigensolver (VQE) and Quantum Phase Estimation (QPE), demonstrate increasing capability in approximating molecular energies and simulating quantum systems. In parallel, applications in bioinformatics—such as protein folding, genomic search, and combinatorial optimization—highlight the potential of quantum computing to address complex biological problems. Quantum machine learning further extends these capabilities by integrating quantum algorithms with data-driven modeling. However, current progress is constrained by NISQ-era limitations, including noise, limited qubit counts, and scalability challenges. These constraints highlight the need for hybrid quantum–classical approaches and improved error mitigation strategies. Overall, quantum computing represents a complementary computational paradigm that can enhance classical methods in bioinformatics and chemistry. Continued advances in quantum algorithms, hardware, and hybrid modeling frameworks are expected to expand its role in molecular science and computational biology.

Bioinfo Chem•Jan 1, 2022•0 citations

Prediction of Molecular Structures and Properties by Using Quantum Technology

Ravuri Krishna

Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.

American Journal of Physical Chemistry•Dec 31, 2025•0 citations

Quantum computing in drug discovery

Harshraj N. Gadbail, Rajendra M. Rewatkar, Nishant Rajendra Jumde +3 more

Early-stage decisions in the pharmaceutical development process carry outsized consequences for eventual clinical success, yet the computational tools underpinning these decisions remain fundamentally constrained. Computer-aided drug design (CADD) has transformed how researchers navigate chemical space and predict ligand–target interactions, but classical implementations rely on mechanical force-field approximations that fail to capture polarisation, charge transfer, and electron correlation effects central to molecular recognition and reactivity. Quantum-mechanical treatments that correctly describe these phenomena scale exponentially with system size on classical hardware, rendering them impractical for drug-relevant biomolecules. Quantum computing offers a physically motivated path beyond this scaling barrier: by exploiting superposition, entanglement, and interference, quantum algorithms can in principle simulate electronic structure with polynomial resource requirements for targeted problem classes. This article provides a theoretical review of how quantum computation integrates throughout the drug discovery pipeline, from target identification to lead optimisation. Its primary contribution is a pipeline-level mapping of quantum methods—including the Variational Quantum Eigensolver (VQE), quantum machine learning, and quantum-enhanced optimisation—to specific drug development stages. The review critically distinguishes near-term NISQ (Noisy Intermediate-Scale Quantum: current devices with 50–1,000 noisy qubits operating without full error correction) capabilities from fault-tolerant quantum computing (FTQC) requirements, quantifies current resource gaps through a worked CYP3A4 case study, and identifies algorithmic limitations (barren plateaus, ansatz expressibility, measurement overhead), hardware scalability, and error correction overhead as the principal barriers to practical deployment.

Frontiers in Drug Discovery•Sep 7, 2026•0 citations

Advancing Drug Discovery and Material Science Using Quantum Simulations for Molecular Structures

Archana Satish Banait, Manjusha Rahul Tatiya, Pratima Patel +3 more

Quantum simulations are changing the way drugs are found and materials are studied because they can model chemical structures and interactions with a new level of accuracy. This study looks at how to use quantum computing techniques, like Variational Quantum Eigensolvers (VQE) and Quantum Approximate Optimisation Algorithms (QAOA), to make traditional methods better at modelling complex chemical systems. Using quantum physics, these models make it possible to accurately predict molecule traits, reaction paths, and energy states. This speeds up the creation of new drugs and materials. Quantum models help find lead chemicals in drug development by correctly modelling how proteins and ligands interact, how strongly they bind, and how reactions happen. In material science, they make it possible to create new materials with specific qualities, like high-performance catalysts, ways to store energy, and long-lasting materials that can be used in industry. Quantum computing and artificial intelligence work well together to make these models more accurate and scalable, which means they can be used on a big scale. This study also looks at problems like quantum technology limits, fixing mistakes, and making algorithms work better. It suggests combining quantum and traditional methods to make computing more efficient. Case studies show that quantum models can be used to solve real-world problems, such as creating focused medicines and materials that are good for the environment. The results show that quantum models have the power to change everything and speed up creativity in many fields. This study shows how quantum computing can change the future of molecular science by connecting theory and practice. It could lead to big steps forward in drug development and material design that help solve important world problems.

International Conference on Information Management & Machine Intelligence (ICIMMI)•Dec 23, 2024•0 citations

Optimization algorithms benchmarking and intra-architecture gate mapping studies for the variational quantum eigensolver

Fotios Gkritsis

The advancements in classical computational components such as CPUs and GPUs have had a reverberating impact on the democratization of computational power available, with the field of computational chemistry reaping significant benefits from the propulsion of the limits of systems studied. The accurate prediction of chemical properties and reaction dynamics through computational simulation is now a centerpiece of modern chemical research, significantly accelerating discoveries research areas of materials science and drug development, as well as industrially relevant processes such as the emission of aldehydes from soft foams, flame retardants and pyrolysis and the carbonylation of epoxides. These achievements of computational chemistry still are overshadowed in the face of fundamental bottlenecks where classical methods remain constrained by the exponential scaling when treating large and/or strongly correlated quantum many-body systems. This innate computational complexity often constitutes chemically accurate calculations based on first principles impractical, or plain impossible, for systems beyond modest sizes. Quantum computing offers a potential pathway around these limitations, originally formally formulated by David Deutsch as a tool for simulating quantum systems, with the first quantum algorithms indicating speed-ups compared to classical counterparts arising from Peter Shor and Lov Grover for the prime factorization of an integer number and unstructured search respectively. Relying on fundamental theorems by Claude Shannon, it has been demonstrated that through the use of error-correcting codes fault-tolerant quantum computers are able to safeguard information against noise and decoherence, strongly indicating towards exponential speedups in solving central computational chemistry problems, such as determining ground state energies or reaction pathways of chemical systems. Substantial strides in experimental quantum computing over the past decade, including proof-of-principle demonstrations of quantum error correction, mean to bring full-scale fault-tolerant quantum computing within the grasp of humanity. The breakthroughs needed to attain scalable, error-corrected quantum computation with capabilities exceeding those of classical methods in real-world scenarios is likely still some years away. While striving to address the engineering challenges standing in the way of achieving fault tolerant quantum computing, substantial effort has been focused toward developing and benchmarking hybrid algorithms tailored for the Noisy Intermediate- Scale Quantum (NISQ) devices, available now to researchers. These hybrid quantum-classical algorithms, with the most notable being the Variational Quantum Eigensolver (VQE), allow the probing of quantum computing’s utility in computational chemistry even in the face of significant hardware noise and limited coherence times. The work presented in this thesis introduces several key additions the VQE framework, geared especially towards to NISQ hardware, where the mindful use of available resources is imperative. First, the implementation of the Conjugate Model Search optimizer is described, an optimization method that integrates simple models that are surrogate to the original function, combined with conjugate gradient optimization to navigate effectively parameter landscapes typical of variational algorithms, prone to noise. Second, this thesis contains the proposal and extensive study of a hyperparameter tuning procedure employing genetic algorithms, allowing for comprehensive simulation benchmarks that augment the robustness and efficiency of VQE implementations with respect to convergence time through real wall-time models of quantum processors. Continuing, a bridge is presented between quantum simulation and quantum chemistry, through qubit-to-fermion mappings of existing quantum gates, further enabling the direct and accurate modeling of chemical systems on trapped atom quantum hardware with the added arsenal provided by techniques designed for qubit architectures. Additionally, experimental data contained in this thesis include detailed benchmarking data collected from state-of-the-art trapped ion quantum processors available at the Johannes Gutenberg Universität Mainz, demonstrating the actual viability and performance of various methodologies for extracting results. Lastly, the state of VQE is examined, as it served as a springboard for a plethora of advancements in the development of quantum computing hardware, as well as the direction the field of simulation of computational quantum chemistry via quantum devices is headed towards in the coming years.

•Jan 1, 2026•0 citations
However, accurately simulating molecular interactions constitutes the central, but open question of computer chemistry. This is a core task for efforts in drug development, catalyst design, and materials science. Most classical algorithms perform well on smaller systems, but incumbent exponential scaling penalties are unavoidable as models grow larger and more complex to describe quantum behaviour. An entirely new paradigm for this problem is now introduced by quantum computing: superposition and entanglement resources natively encode quantum states and model their electronic structures. The paper will thus take a high-level view of the leading quantum algorithms, with particular regard to those called Variational Quantum Eigensolver (VQE) and Quantum Phase Estimation (QPE), while evaluating their performance on today's Noisy Intermediate Scale Quantum (NISQ) devices. Next will follow discussions on algorithm design and current hardware capabilities, before which open challenges on scalability, error mitigation, and algorithm design will be outlined. Emphasis shall also be placed on the ethics and accessibility issues as well as the timelines with which quantum computing might gain a practical advantage. Linking together the recent advances and limitations, this paper posits how quantum computer implementation may change the face of chemical modelling and scientific discovery.
Quantum chemistry plays a crucial role in advancing fundamental understanding of chemical processes and driving innovation in energy, medicine, and materials science. Recent progress in quantum computing has opened new possibilities for molecular simulations that are beyond the practical limits of classical approaches. Academic studies have demonstrated hybrid Density Functional Theory (DFT) and Variational Quantum Eigensolver (VQE) benchmarks on small transition-metal systems, such as iron porphyrin and heme analogues, using current noisy intermediate-scale quantum (NISQ) hardware. Although full-scale simulations of complex biological systems such as the complete Cytochrome P450 (CYP450) active site remain a long-term goal due to limitations in qubit numbers, coherence times, and error correction, the underlying methodologies are now well established. At present, quantum chemistry applications in drug discovery remain largely experimental, and widespread practical medical impact is expected to require further technological advances over the next 5–10 years. Nevertheless, quantum software and algorithm development for chemical applications is progressing rapidly. This perspective summarizes recent advances in quantum computing algorithms, hardware, and software relevant to chemistry, and critically discusses the remaining challenges and opportunities for applying quantum computing to chemical problems, with particular emphasis on drug discovery and development.
Quantum computing is emerging as a transformative approach in bioinformatics and quantum chemistry, addressing fundamental computational limitations of classical methods in molecular science. Many biological and chemical systems are inherently governed by quantum mechanics, making accurate simulation with classical algorithms computationally expensive or infeasible. This review examines how quantum computing, particularly in the Noisy Intermediate-Scale Quantum (NISQ) era, is advancing molecular modeling, reaction dynamics, and bioinformatics applications. Key quantum algorithms, including the Variational Quantum Eigensolver (VQE) and Quantum Phase Estimation (QPE), demonstrate increasing capability in approximating molecular energies and simulating quantum systems. In parallel, applications in bioinformatics—such as protein folding, genomic search, and combinatorial optimization—highlight the potential of quantum computing to address complex biological problems. Quantum machine learning further extends these capabilities by integrating quantum algorithms with data-driven modeling. However, current progress is constrained by NISQ-era limitations, including noise, limited qubit counts, and scalability challenges. These constraints highlight the need for hybrid quantum–classical approaches and improved error mitigation strategies. Overall, quantum computing represents a complementary computational paradigm that can enhance classical methods in bioinformatics and chemistry. Continued advances in quantum algorithms, hardware, and hybrid modeling frameworks are expected to expand its role in molecular science and computational biology.
Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.
Early-stage decisions in the pharmaceutical development process carry outsized consequences for eventual clinical success, yet the computational tools underpinning these decisions remain fundamentally constrained. Computer-aided drug design (CADD) has transformed how researchers navigate chemical space and predict ligand–target interactions, but classical implementations rely on mechanical force-field approximations that fail to capture polarisation, charge transfer, and electron correlation effects central to molecular recognition and reactivity. Quantum-mechanical treatments that correctly describe these phenomena scale exponentially with system size on classical hardware, rendering them impractical for drug-relevant biomolecules. Quantum computing offers a physically motivated path beyond this scaling barrier: by exploiting superposition, entanglement, and interference, quantum algorithms can in principle simulate electronic structure with polynomial resource requirements for targeted problem classes. This article provides a theoretical review of how quantum computation integrates throughout the drug discovery pipeline, from target identification to lead optimisation. Its primary contribution is a pipeline-level mapping of quantum methods—including the Variational Quantum Eigensolver (VQE), quantum machine learning, and quantum-enhanced optimisation—to specific drug development stages. The review critically distinguishes near-term NISQ (Noisy Intermediate-Scale Quantum: current devices with 50–1,000 noisy qubits operating without full error correction) capabilities from fault-tolerant quantum computing (FTQC) requirements, quantifies current resource gaps through a worked CYP3A4 case study, and identifies algorithmic limitations (barren plateaus, ansatz expressibility, measurement overhead), hardware scalability, and error correction overhead as the principal barriers to practical deployment.
Quantum simulations are changing the way drugs are found and materials are studied because they can model chemical structures and interactions with a new level of accuracy. This study looks at how to use quantum computing techniques, like Variational Quantum Eigensolvers (VQE) and Quantum Approximate Optimisation Algorithms (QAOA), to make traditional methods better at modelling complex chemical systems. Using quantum physics, these models make it possible to accurately predict molecule traits, reaction paths, and energy states. This speeds up the creation of new drugs and materials. Quantum models help find lead chemicals in drug development by correctly modelling how proteins and ligands interact, how strongly they bind, and how reactions happen. In material science, they make it possible to create new materials with specific qualities, like high-performance catalysts, ways to store energy, and long-lasting materials that can be used in industry. Quantum computing and artificial intelligence work well together to make these models more accurate and scalable, which means they can be used on a big scale. This study also looks at problems like quantum technology limits, fixing mistakes, and making algorithms work better. It suggests combining quantum and traditional methods to make computing more efficient. Case studies show that quantum models can be used to solve real-world problems, such as creating focused medicines and materials that are good for the environment. The results show that quantum models have the power to change everything and speed up creativity in many fields. This study shows how quantum computing can change the future of molecular science by connecting theory and practice. It could lead to big steps forward in drug development and material design that help solve important world problems.
The advancements in classical computational components such as CPUs and GPUs have had a reverberating impact on the democratization of computational power available, with the field of computational chemistry reaping significant benefits from the propulsion of the limits of systems studied. The accurate prediction of chemical properties and reaction dynamics through computational simulation is now a centerpiece of modern chemical research, significantly accelerating discoveries research areas of materials science and drug development, as well as industrially relevant processes such as the emission of aldehydes from soft foams, flame retardants and pyrolysis and the carbonylation of epoxides. These achievements of computational chemistry still are overshadowed in the face of fundamental bottlenecks where classical methods remain constrained by the exponential scaling when treating large and/or strongly correlated quantum many-body systems. This innate computational complexity often constitutes chemically accurate calculations based on first principles impractical, or plain impossible, for systems beyond modest sizes. Quantum computing offers a potential pathway around these limitations, originally formally formulated by David Deutsch as a tool for simulating quantum systems, with the first quantum algorithms indicating speed-ups compared to classical counterparts arising from Peter Shor and Lov Grover for the prime factorization of an integer number and unstructured search respectively. Relying on fundamental theorems by Claude Shannon, it has been demonstrated that through the use of error-correcting codes fault-tolerant quantum computers are able to safeguard information against noise and decoherence, strongly indicating towards exponential speedups in solving central computational chemistry problems, such as determining ground state energies or reaction pathways of chemical systems. Substantial strides in experimental quantum computing over the past decade, including proof-of-principle demonstrations of quantum error correction, mean to bring full-scale fault-tolerant quantum computing within the grasp of humanity. The breakthroughs needed to attain scalable, error-corrected quantum computation with capabilities exceeding those of classical methods in real-world scenarios is likely still some years away. While striving to address the engineering challenges standing in the way of achieving fault tolerant quantum computing, substantial effort has been focused toward developing and benchmarking hybrid algorithms tailored for the Noisy Intermediate- Scale Quantum (NISQ) devices, available now to researchers. These hybrid quantum-classical algorithms, with the most notable being the Variational Quantum Eigensolver (VQE), allow the probing of quantum computing’s utility in computational chemistry even in the face of significant hardware noise and limited coherence times. The work presented in this thesis introduces several key additions the VQE framework, geared especially towards to NISQ hardware, where the mindful use of available resources is imperative. First, the implementation of the Conjugate Model Search optimizer is described, an optimization method that integrates simple models that are surrogate to the original function, combined with conjugate gradient optimization to navigate effectively parameter landscapes typical of variational algorithms, prone to noise. Second, this thesis contains the proposal and extensive study of a hyperparameter tuning procedure employing genetic algorithms, allowing for comprehensive simulation benchmarks that augment the robustness and efficiency of VQE implementations with respect to convergence time through real wall-time models of quantum processors. Continuing, a bridge is presented between quantum simulation and quantum chemistry, through qubit-to-fermion mappings of existing quantum gates, further enabling the direct and accurate modeling of chemical systems on trapped atom quantum hardware with the added arsenal provided by techniques designed for qubit architectures. Additionally, experimental data contained in this thesis include detailed benchmarking data collected from state-of-the-art trapped ion quantum processors available at the Johannes Gutenberg Universität Mainz, demonstrating the actual viability and performance of various methodologies for extracting results. Lastly, the state of VQE is examined, as it served as a springboard for a plethora of advancements in the development of quantum computing hardware, as well as the direction the field of simulation of computational quantum chemistry via quantum devices is headed towards in the coming years.