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arXiv:2602.11469 · npj Quantum Information

Structural control of two-level defect density revealed by high-throughput correlative measurements of Josephson junctions

Oliver F. Wolff, Harshvardhan Mantry, Rahim Raja, Wei-Hsiang Peng, Kaushik Singirikonda, Seungkyun Lee, Shishir Sudhaman, Rafael Goncalves, Pinshane Y. Huang, Angela Kou, Wolfgang Pfaff

quant-phcond-mat.mes-hallcond-mat.mtrl-sciSubmitted Feb 12, 2026• Announced Feb 13, 2026• 0 citations
arXivHTMLPDF

Abstract

Materials defects in Josephson junctions (JJs), often referred to as two-level systems (TLS), couple to superconducting qubits and are a critical bottleneck for scalable quantum processors. Despite their importance, understanding the microscopic sources of TLS and how to mitigate them has remained a major challenge. Here, we demonstrate a high-throughput, correlated approach to trace the microstructural origins of strongly-coupled TLS in Josephson circuits. We assembled a massive dataset of TLS across 6,000 Al/AlOx/Al JJs and more than 600 atomic resolution transmission electron microscopy images. We statistically link fabrication, microstructure, and TLS occurrence, revealing a strong correlation between Al electrode thickness, Al grain size, and TLS density. Correspondingly, we find a two-thirds reduction in TLS prompted by a change in electrode fabrication parameters. These results demonstrate a robust, data-driven methodology to understand and control defects in quantum circuits and pave the way for significantly reducing TLS density.

Comments
14 pages, 7 figures

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Coulomb blockade in microscopic material defects as a source of decoherence and noise in solid-state quantum circuits

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A critical limitation of solid-state quantum devices arises from the materials from which they are fabricated: uncontrolled surfaces, interfaces, and structural imperfections introduce numerous sources of loss and decoherence. Despite extensive efforts, linking these decoherence mechanisms to their microscopic material origins -- essential for developing effective mitigation strategies -- remains an outstanding challenge that has slowed coherence improvements. Here, using scanning gate microscopy on live superconducting circuits we identify a previously unrecognised decoherence mechanism originating from Coulomb blockade and microwave-driven charge tunnelling in metallic grains. Such grains are ubiquitous in thin-film devices fabricated by standard lithography processes. By characterising multiple defects across different devices, we find such defects to be as common and as debilitating to device performance as two-level system (TLS) defects, while originating from a fundamentally different physical mechanism. Importantly, conventional characterisation techniques would misattribute this loss to other, microwave power-independent processes. Our observations thus reveal a widespread source of decoherence in superconducting circuits, challenging the prevailing paradigm that coherence lifetimes are primarily limited by TLS defects. Eliminating metallic grains during fabrication provides a clear and practical route to suppress this mechanism, offering a pathway towards improved coherence and reduced noise in microwave-based solid-state quantum devices.

quant-pharXiv:2607.15252•Jul 17, 2026•0 citations

Correlative Reciprocal-Space and Spectral Mapping of the Quantum Microstructure in High-Performance Epitaxial Materials for Superconducting Qubits

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For this reason, numerous efforts have explored crystalline dielectrics as a replacement for amorphous AlOx, since single-crystal materials do not suffer from the lack of long-range order and sub-stoichiometry that comprise TLS defects [9-12]. However, none of these alternative materials choices have been able to surpass, let alone replicate, the performance of Al-AlOx-Al JJs. In this work, we fabricate superconducting quantum devices using a novel heteroepitaxial TiN/γ-Al2O3/TiN tri-layer stack grown on sapphire (Fig. 1a) and find that the measured microwave loss of the single-crystal γ-Al2O3 dielectric is lower than that of amorphous AlOx by two orders of magnitude. For qubits made with this tri-layer to transcend the coherence of incumbent Al-AlOx-Al, the structural, chemical, and electronic defects that induce TLS loss in these materials need to be well understood. 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The STEM convergence angle, HAADF collection angle, and ABF collection angle were 27 mrad, 90 – 370 mrad, and 23 mrad, respectively. EELS data were collected on a JEOL JEM-ARM300F GrandARM S/TEM operating at 300 kV using the Gatan GIF Continuum K3 IS system. The data were collected using a 2.5 mm aperture and a 750 eV wide energy slit at a dispersion of 0.18 eV/Ch and a camera length of 2 cm. 4D-STEM data were collected on the same microscope and detector system using a 0.5 – 1.5 mrad convergence angle and a 20 eV wide energy slit at a camera length of 4 cm. All STEM data processing was performed using the Gatan Microscopy Suite software. Top-down EBSD measurements were performed in the Thermo Scientific Helios 5 CX DualBeam FIB/SEM at 25 kV using the Oxford Symmetry S3 detector. EBSD data processing was performed using the Oxford AZtecCrystal software [15]. Defects in γ-Al2O3. a) HAADF-STEM image of a TiN/γ-Al2O3/TiN tri-layer stack on a α-Al2O3 (0001) substrate. 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Microscopy and Microanalysis•Jul 1, 2026•0 citations

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Improving qubit lifetime is essential for fault-tolerant quantum computing. It is widely acknowledged that intricate processing techniques introduce defects at the interfaces and surfaces of superconducting quantum circuits, which can create sources of decoherence. Therefore, a precise understanding of how a material's structure contributes to decoherence is critical for enhancing the performance of superconducting qubits. This talk highlights our recent advancements in understanding surface oxides in resonators and ultrathin aluminum oxide barriers in Josephson junctions (JJs) using transmission electron microscopy and spectroscopy techniques [1-4]. The Superconducting Quantum Materials & Systems Center (SQMS) demonstrated that encapsulating niobium surfaces with a ∼10nm tantalum layer results in 2-5x longer T1​ than bare niobium [2]. Our collaborative investigation shows that this improvement is attributed to tantalum's less lossy surface oxide, which contains fewer sub-oxides than niobium oxide. Moreover, the amorphous Ta2O5 shows a bonding nature closer to crystalline form than amorphous Nb2O5, potentially reducing hydrogen diffusion toward the oxide/metal interface [1, 2]. Moreover, we will briefly discuss our preliminary study of the thin film structure under cryogenic conditions down to 20K, conducted using a liquid helium TEM holder in a Thermo Cs-corrected Titan. We also explored the effect of aluminum deposition rates on aluminum oxide microstructure and qubit lifetime. Although increasing the deposition rate from 0.5 Å/s to 5 Å/s significantly improved oxide layer roughness and thickness variation, the qubits’ coherence remained unchanged. This is likely due to Cooper pairs only tunneling through the thinnest parts of the barrier, making them less affected by the grain boundaries in the thin aluminum films. Additionally, we uncovered a stress-induced grain boundary sliding mechanism, which contributes to short-circuit failures in JJs [4]. Our discovery provides vital insight into oxide microstructure and superconducting qubits’ functionality [5].

Microscopy and Microanalysis•Jul 1, 2025•0 citations

Impact of fabrication history induced disorder on Josephson junction reproducibility and qubit performance

Dae-Yun Kim, Hyeokshin Kwon, Dae Seok Han +8 more

Reproducible Josephson junction (JJ) characteristics are essential for frequency-deterministic and scalable superconducting quantum processors. We show that the normal-state resistance and its reproducibility in Al/AlOx/Al JJs are governed not by oxide thickness, but by fabrication-history–induced disorder in the tunneling barrier. By comparing junctions fabricated on bare wafers, lift-off–processed base layers, and dry-etched base layers under identical oxidation conditions, we observe large differences in resistance and wafer-to-wafer variability. Atomic force microscopy reveals distinct surface disorder imprinted by prior fabrication steps, while cross-sectional transmission electron microscopy show that the average AlOx barrier thickness is comparable across the three fabrication histories within experimental uncertainty. The enhanced resistance on rough, plasma-damaged surfaces therefore originates from nanoscale barrier disorder rather than thickness variations. These results establish fabrication history as a key determinant of JJ barrier quality and highlight the need for holistic process control to achieve deterministic qubit frequency targeting.

Scientific Reports•Apr 10, 2026•0 citations
Materials defects in Josephson junctions (JJs), often referred to as two-level systems (TLS), couple to superconducting qubits and are a critical bottleneck for scalable quantum processors. Despite their importance, understanding the microscopic sources of TLS and how to mitigate them has remained a major challenge. Here, we demonstrate a high-throughput, correlated approach to trace the microstructural origins of strongly-coupled TLS in Josephson circuits. We assembled a massive dataset of TLS across 6,000 Al/AlOx/Al JJs and more than 600 atomic resolution transmission electron microscopy images. We statistically link fabrication, microstructure, and TLS occurrence, revealing a strong correlation between Al electrode thickness, Al grain size, and TLS density. Correspondingly, we find a two-thirds reduction in TLS prompted by a change in electrode fabrication parameters. These results demonstrate a robust, data-driven methodology to understand and control defects in quantum circuits and pave the way for significantly reducing TLS density.
A critical limitation of solid-state quantum devices arises from the materials from which they are fabricated: uncontrolled surfaces, interfaces, and structural imperfections introduce numerous sources of loss and decoherence. Despite extensive efforts, linking these decoherence mechanisms to their microscopic material origins -- essential for developing effective mitigation strategies -- remains an outstanding challenge that has slowed coherence improvements. Here, using scanning gate microscopy on live superconducting circuits we identify a previously unrecognised decoherence mechanism originating from Coulomb blockade and microwave-driven charge tunnelling in metallic grains. Such grains are ubiquitous in thin-film devices fabricated by standard lithography processes. By characterising multiple defects across different devices, we find such defects to be as common and as debilitating to device performance as two-level system (TLS) defects, while originating from a fundamentally different physical mechanism. Importantly, conventional characterisation techniques would misattribute this loss to other, microwave power-independent processes. Our observations thus reveal a widespread source of decoherence in superconducting circuits, challenging the prevailing paradigm that coherence lifetimes are primarily limited by TLS defects. Eliminating metallic grains during fabrication provides a clear and practical route to suppress this mechanism, offering a pathway towards improved coherence and reduced noise in microwave-based solid-state quantum devices.
Superconducting qubit technology is among the most promising hardware platform for quantum computing due to its fast gate operation, manufacturing scalability, and architectural flexibility [1]. A key figure of merit that dictates quantum computing functionality is the qubit’s coherence time, which needs to be maximized in order to bring quantum computing to the practical and scalable realm [2]. In particular, the T1 relaxation time—now on the order of milliseconds—can be enhanced with materials engineering, as amorphous dielectrics and crystallographic defects, among other factors, are known to induce decoherence [3-7]. Current state-of-the-art superconducting qubit devices use amorphous AlOx sandwiched between two superconducting Al electrodes as the Josephson junction (JJ), a key element in the transmon qubit, but amorphous dielectrics introduce two-level system (TLS) loss that underlie decoherence [8]. For this reason, numerous efforts have explored crystalline dielectrics as a replacement for amorphous AlOx, since single-crystal materials do not suffer from the lack of long-range order and sub-stoichiometry that comprise TLS defects [9-12]. However, none of these alternative materials choices have been able to surpass, let alone replicate, the performance of Al-AlOx-Al JJs. In this work, we fabricate superconducting quantum devices using a novel heteroepitaxial TiN/γ-Al2O3/TiN tri-layer stack grown on sapphire (Fig. 1a) and find that the measured microwave loss of the single-crystal γ-Al2O3 dielectric is lower than that of amorphous AlOx by two orders of magnitude. For qubits made with this tri-layer to transcend the coherence of incumbent Al-AlOx-Al, the structural, chemical, and electronic defects that induce TLS loss in these materials need to be well understood. Towards this end, we combine scanning transmission electron microscopy (STEM) and scanning electron microscopy (SEM) methods to highlight structural and interfacial complexity across length scales, ultimately identifying loss sources in the TiN/γ-Al2O3/TiN heteroepitaxial tri-layer. With atomic-resolution imaging and four-dimensional (4D-)STEM nanobeam electron diffraction (NBED), we find that the dielectric γ-Al2O3 layer, though single-crystalline (Fig. 1b), suffers from the formation of antiphase boundaries (Fig. 1c), which can host strong local electric fields and enhance lossy dielectric response [13]. Correlated with these nanoscale planar defects is uniformly distributed elastic strain, on the order of 6%, between the lattice-mismatched γ-Al2O3 and TiN (Fig. 1d). In other words, the dielectric layer is fully strained to match the underlying metal layer; such high strain can distort local bonding environments and thus create new TLSs or shift existing TLSs into resonance. Beyond imperfections within the bulk of the dielectric layer, there are noteworthy interfacial defects: roughening of both TiN/γ-Al2O3 interfaces deviate from atomically flat boundaries (Fig. 1c), while anion interdiffusion across both interfaces, as evident from core-loss electron energy-loss spectral (EELS) maps (Fig. 1e), leave behind vacancies and undercoordinated metal atoms, thereby creating 1.5 – 2 nm nonstoichiometric diffuse interfacial layers, both of which can cause TLS loss. In the superconducting TiN layers, we again use NBED to identify 180°-reflected specular twinned domains, indicating distinct heteroepitaxial relationships of [111]TiN//[0006]Al2O3 and [002¯]TiN//[22¯02¯]Al2O3 (Fig. 2a) [14]. Crystal twinning of the TiN epilayer is not only spatially distributed at the nanoscale, as shown using virtual dark-field (VDF) images (Fig. 2b), but is also widespread at the microscale, as shown using SEM electron backscatter diffraction (EBSD) (Fig. 2c). While microwave performance is not limited by a single factor, it is clear that defective quantum microstructure across length scales collectively contribute to dielectric loss, and in turn, TLS-related decoherence. By correlating nanoscale crystallographic and spectroscopic information with microscale diffraction measurements, our work can guide interface engineering during material growth, paving the way towards further improvements in quantum device performance. Cross-sectional samples were prepared by subsequent 30 kV, 8 kV and 5 kV Xe+ plasma focused ion beam (FIB) using the Thermo Scientific Helios 5 Hydra CX DualBeam Plasma FIB/SEM. Samples were then plasma cleaned using South Bay Technology PC-2000 Plasma Cleaner with a 3:1 mixture of Ar:O2 gas at 20∼40 W RF power for 15 s at 150 mTorr. High-angle annular dark-field (HAADF-) and annular bright-field (ABF-) STEM images were collected on a probe-corrected JEOL JEM-ARM200CF S/TEM operating at 200 kV using JEOL detectors. The STEM convergence angle, HAADF collection angle, and ABF collection angle were 27 mrad, 90 – 370 mrad, and 23 mrad, respectively. EELS data were collected on a JEOL JEM-ARM300F GrandARM S/TEM operating at 300 kV using the Gatan GIF Continuum K3 IS system. The data were collected using a 2.5 mm aperture and a 750 eV wide energy slit at a dispersion of 0.18 eV/Ch and a camera length of 2 cm. 4D-STEM data were collected on the same microscope and detector system using a 0.5 – 1.5 mrad convergence angle and a 20 eV wide energy slit at a camera length of 4 cm. All STEM data processing was performed using the Gatan Microscopy Suite software. Top-down EBSD measurements were performed in the Thermo Scientific Helios 5 CX DualBeam FIB/SEM at 25 kV using the Oxford Symmetry S3 detector. EBSD data processing was performed using the Oxford AZtecCrystal software [15]. Defects in γ-Al2O3. a) HAADF-STEM image of a TiN/γ-Al2O3/TiN tri-layer stack on a α-Al2O3 (0001) substrate. The thickness of γ-Al2O3 is approximately 13.5 nm. b) 4D-STEM NBED pattern of the γ-Al2O3 layer, confirming the {111} out-of-plane orientation. c) Fourier-filtered atomic-resolution ABF-STEM image of the γ-Al2O3 dielectric layer, taken from the cyan-colored square region in a), emphasizing the planar defects along both TiN/γ-Al2O3 interfaces and within the γ-Al2O3 layer itself–interfacial roughness (yellow lines) and antiphase boundaries (colored parallelograms), respectively. The scale bar is 2 nm. d) In-plane and out-of-plane strain maps of the heteroepitaxial tri-layer stack, with approximately 6.5∼6.8% strain in both directions. The units of the intensity bar are such that 100% strain would be equivalent to 1.0. e) STEM-EELS maps of Ti-L2,3, N-K, and O-K edges, along with a superimposed image of the three, taken from the same region as c). The scale bars are all 5 nm. Defects in TiN. a) 4D-STEM NBED patterns and b) VDF images of nanoscale TiN {111} and {002} twins. c) SEM EBSD pole figures in the three face-centered cubic crystallographic directions, revealing that the 60° rotation twinning behavior (with the [111] twin axis) is spread across the microscale.
Microscopic inhomogeneity within superconducting films is a critical bottleneck hindering the performance and scalability of quantum circuits. All-nitride Josephson Junctions (JJs) have attracted substantial attention for their potential to provide enhanced coherence times and enable higher temperature operation. However, their performance is often limited by local variations caused by polymorphism, impurities, and interface quality. This work diagnoses atomic-scale limitations preventing superconducting NbN/AlN/NbN JJs from reaching their full potential. Electrical measurements reveal suppressed critical current density and soft onset of quasiparticle current. However, inverse proportionality between resistance and junction area confirms homogenous barrier thickness. This isolates structural and chemical variations in electrodes and barrier as the source of performance limitation. The observed characteristics are attributed to complex materials problems: NbN polymorphism, phase coexistence, and oxygen impurities. Using advanced microscopy and machine learning integrated approach, nanoscale inclusions of epsilon-Nb2N2 are found to coexist within dominant delta-NbN electrodes. DC performance of JJs may be affected by these defects, leading to unresolved supercurrent and soft transition to normal state. By identifying specific atomic scale defects, tracing its origin to initial film nucleation, and linking to its detrimental electrical signature, this work establishes a material-to-device correlation and provides targeted strategy for phase engineering towards reproducible, high coherence and scalable quantum devices.
Abstract Decoherence in superconducting quantum circuits, caused by loss mechanisms like material imperfections and two-level system (TLS) defects, remains a major obstacle to improving the performance of quantum devices. In this work, we present atomic-level characterization of cross-sections of a Josephson junction and a spiral resonator to assess the quality of critical interfaces. Employing scanning transmission electron microscopy combined with energy-dispersive x-ray spectroscopy and electron-energy loss spectroscopy, we identify structural imperfections associated with oxide layer formation and carbon-based contamination, and correlate these imperfections to the patterning and etching steps in the fabrication process and environmental exposure. These results suggest that TLS imperfections at critical interfaces significantly contribute to limiting device performance, emphasizing the need for an improved fabrication process.
Improving qubit lifetime is essential for fault-tolerant quantum computing. It is widely acknowledged that intricate processing techniques introduce defects at the interfaces and surfaces of superconducting quantum circuits, which can create sources of decoherence. Therefore, a precise understanding of how a material's structure contributes to decoherence is critical for enhancing the performance of superconducting qubits. This talk highlights our recent advancements in understanding surface oxides in resonators and ultrathin aluminum oxide barriers in Josephson junctions (JJs) using transmission electron microscopy and spectroscopy techniques [1-4]. The Superconducting Quantum Materials & Systems Center (SQMS) demonstrated that encapsulating niobium surfaces with a ∼10nm tantalum layer results in 2-5x longer T1​ than bare niobium [2]. Our collaborative investigation shows that this improvement is attributed to tantalum's less lossy surface oxide, which contains fewer sub-oxides than niobium oxide. Moreover, the amorphous Ta2O5 shows a bonding nature closer to crystalline form than amorphous Nb2O5, potentially reducing hydrogen diffusion toward the oxide/metal interface [1, 2]. Moreover, we will briefly discuss our preliminary study of the thin film structure under cryogenic conditions down to 20K, conducted using a liquid helium TEM holder in a Thermo Cs-corrected Titan. We also explored the effect of aluminum deposition rates on aluminum oxide microstructure and qubit lifetime. Although increasing the deposition rate from 0.5 Å/s to 5 Å/s significantly improved oxide layer roughness and thickness variation, the qubits’ coherence remained unchanged. This is likely due to Cooper pairs only tunneling through the thinnest parts of the barrier, making them less affected by the grain boundaries in the thin aluminum films. Additionally, we uncovered a stress-induced grain boundary sliding mechanism, which contributes to short-circuit failures in JJs [4]. Our discovery provides vital insight into oxide microstructure and superconducting qubits’ functionality [5].
Reproducible Josephson junction (JJ) characteristics are essential for frequency-deterministic and scalable superconducting quantum processors. We show that the normal-state resistance and its reproducibility in Al/AlOx/Al JJs are governed not by oxide thickness, but by fabrication-history–induced disorder in the tunneling barrier. By comparing junctions fabricated on bare wafers, lift-off–processed base layers, and dry-etched base layers under identical oxidation conditions, we observe large differences in resistance and wafer-to-wafer variability. Atomic force microscopy reveals distinct surface disorder imprinted by prior fabrication steps, while cross-sectional transmission electron microscopy show that the average AlOx barrier thickness is comparable across the three fabrication histories within experimental uncertainty. The enhanced resistance on rough, plasma-damaged surfaces therefore originates from nanoscale barrier disorder rather than thickness variations. These results establish fabrication history as a key determinant of JJ barrier quality and highlight the need for holistic process control to achieve deterministic qubit frequency targeting.