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Many-body physics of ultracold bosons: numerical simulations, single-shot images, and machine learning

Miriam Büttner

Published Jul 27, 2026• 0 citations
Publisher

Abstract

In this thesis, the behavior of ultracold bosonic systems in external potentials is investigated. Such systems are typically realized as Bose-Einstein condensates, where dilute atomic gases cooled to extremely low temperatures exhibit collective quantum behavior. Because of the large degree of control they allow over the external potential and over the interaction parameters of the many-body system, Bose-Einstein condensates constitute a testing ground for the dedicated study of coherence, correlations, and quantum phase transitions in interacting bosonic systems. This thesis presents an investigation of the many-body physics of ultracold bosons, focusing specifically on how the many-body properties of these ultracold bosonic systems change with changing external potential, how they manifest themselves in experimentally accessible observables, and how these properties can be analyzed using both numerical many-body methods and data-driven approaches. The first part of this thesis focuses on the theoretical description of ultracold bosonic systems in external trapping potentials. Using the multiconfigurational time-dependent Hartree method for bosons (MCTDH-X), numerically exact simulations were performed that allow the calculation of reduced density matrices, natural orbitals, and correlation functions. These quantities were used to analyze the coherence properties and fragmentation of trapped bosonic systems. In particular, double-well systems were investigated as model scenarios in which the gradual formation of a central barrier leads to a redistribution of natural occupations and a transition from a condensed to a fragmented many-body state. In this context, we demonstrate the usefulness of single-shot images, which represent projective measurements of the many-body wave function, for the experimental investigation of the many-body physics of fragmenting system. Single-shot images can be simulated numerically using MCTDH-X, but they are more commonly obtained through experimental measurements. The possibility of extracting many-body information in an experimental context, where said many-body information is not otherwise accessible, is discussed. Supervised machine learning models were trained on simulated single-shot data sets to investigate whether information about the underlying many-body state can be inferred directly from measurement outcomes. The results show that machine learning models are capable of learning patterns in the single-shot images that correlate with properties of the underlying many-body state and can therefore predict density-related quantities with good accuracy. The second part of this thesis focuses on a joint theoretical and experimental investigation of a system of ultracold bosons coupled to an optical cavity. In this system, the atoms interact with a dynamically generated optical potential produced by the cavity field. We use a new theoretical framework that combines a mean-field treatment of the cavity field with a many-body description of the atomic degrees of freedom to be able to capture the emergence of a superradiant self-organized phase and the subsequent transition to a self-organized Mott-insulating state. Our simulations show good agreement with the experimental results, and we discuss where the use of a beyond mean-field treatment in the simulations becomes essential in describing the physics of the different involved phases and quantum states. In summary, the results presented in this thesis demonstrate how numerical many-body simulations and machine learning methods can be used to analyze experimentally accessible observables and to gain insight into the many-body physics of ultracold bosonic systems.

DOI
10.6094/unifr/285024

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Many-body physics of ultracold bosons: numerical simulations, single-shot images, and machine learning

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In this thesis, the behavior of ultracold bosonic systems in external potentials is investigated. Such systems are typically realized as Bose-Einstein condensates, where dilute atomic gases cooled to extremely low temperatures exhibit collective quantum behavior. Because of the large degree of control they allow over the external potential and over the interaction parameters of the many-body system, Bose-Einstein condensates constitute a testing ground for the dedicated study of coherence, correlations, and quantum phase transitions in interacting bosonic systems. This thesis presents an investigation of the many-body physics of ultracold bosons, focusing specifically on how the many-body properties of these ultracold bosonic systems change with changing external potential, how they manifest themselves in experimentally accessible observables, and how these properties can be analyzed using both numerical many-body methods and data-driven approaches. The first part of this thesis focuses on the theoretical description of ultracold bosonic systems in external trapping potentials. Using the multiconfigurational time-dependent Hartree method for bosons (MCTDH-X), numerically exact simulations were performed that allow the calculation of reduced density matrices, natural orbitals, and correlation functions. These quantities were used to analyze the coherence properties and fragmentation of trapped bosonic systems. In particular, double-well systems were investigated as model scenarios in which the gradual formation of a central barrier leads to a redistribution of natural occupations and a transition from a condensed to a fragmented many-body state. In this context, we demonstrate the usefulness of single-shot images, which represent projective measurements of the many-body wave function, for the experimental investigation of the many-body physics of fragmenting system. Single-shot images can be simulated numerically using MCTDH-X, but they are more commonly obtained through experimental measurements. The possibility of extracting many-body information in an experimental context, where said many-body information is not otherwise accessible, is discussed. Supervised machine learning models were trained on simulated single-shot data sets to investigate whether information about the underlying many-body state can be inferred directly from measurement outcomes. The results show that machine learning models are capable of learning patterns in the single-shot images that correlate with properties of the underlying many-body state and can therefore predict density-related quantities with good accuracy. The second part of this thesis focuses on a joint theoretical and experimental investigation of a system of ultracold bosons coupled to an optical cavity. In this system, the atoms interact with a dynamically generated optical potential produced by the cavity field. We use a new theoretical framework that combines a mean-field treatment of the cavity field with a many-body description of the atomic degrees of freedom to be able to capture the emergence of a superradiant self-organized phase and the subsequent transition to a self-organized Mott-insulating state. Our simulations show good agreement with the experimental results, and we discuss where the use of a beyond mean-field treatment in the simulations becomes essential in describing the physics of the different involved phases and quantum states. In summary, the results presented in this thesis demonstrate how numerical many-body simulations and machine learning methods can be used to analyze experimentally accessible observables and to gain insight into the many-body physics of ultracold bosonic systems.

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Ultracold Bose gases as precise quantum simulators have emerged amongst the leaders in the current race  – a second quantum revolution  – toward the promise of unfathomable sensitivity, scope, and speed of a new era of technology. The only path leading to these advancements is through many-body descriptions, especially in regimes where interatomic interactions render many approximations incompatible with the physics. The research in this dissertation unlocks a piece of this mystery through investigations of many-body quantum tunneling of ultracold bosons in optical lattices. A key mechanism to characterizing the dynamics, matrix product state simulations equip the many-body toolbox with efficient optimization of large Hilbert spaces together with correlation and entropy measures that help clarify when semiclassical or mean-field approximations fail. In this thesis we obtain the following results. Macroscopic quantum tunneling escape of a Bose-Einstein condensate  – comprised of tens of thousands of 87Rb atoms  – from a single well, as portrayed through both experiment and theory, highlights non-exponential decay in the number of atoms trapped behind the barrier. Additionally, explicit symmetry breaking of a biperiodic optical lattice ring trap to a uniform one illustrates a critical symmetry-breaking strength at which the system transitions from a state of remembering to a state of forgetting its initial symmetry state; this symmetry memory indicates a new form of quantum dynamics that requires the quantum advantage for scaling up particle number and lattice sites. Extensive characterization of dynamical regimes in a bosonic Josephson junction  – underlaid by an optical lattice as described by the Bose-Hubbard model  – reveal substantial deviation of many body dynamics from the mean field or semiclassical predictions underlying the usual operating regime of Josephson junctions. Initial state population and phase yield insight into dynamic tunneling regimes of a quasi one-dimensional double well potential, through the Z2 spontaneous symmetry-breaking phase transition from Josephson oscillations to macroscopic self-trapping. We demonstrate that with increasing repulsive interaction strength, the U(1) superfluid-Mott insulator phase transition induces localized dynamics in the number density, such as particle-hole and soliton formation. Moreover, g^(2) correlations unveil a new dynamic regime  – the Fock flashlight. The new field of atomtronics  – or atomic circuits  – has emerged with many studies of weakly-interacting condensates. In contrast, and building on our work on many-body effects in the double wells underlying Josephson junctions, we present a proof-of-principle of a Mott-insulating atomtronic switch that requires strongly-interacting bosons. Through transient analysis, we reveal that hole conductance can be modulated via tuning interaction strength through a critical value, thus propelling the state to the next ``wedding cake'' layer of the Mott insulating structure. This critical interaction strength is a…

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This thesis covers two fields of research carried out in the context of ultracold Fermi gases: Non-equilibrium physics in the BEC-BCS crossover and the use of machine learning methods in physics. \n\t \nThe BEC-BCS crossover is of particular interest for the investigation of low-temperature superconductivity and related many-body phenomena. We realise the BEC-BCS crossover experimentally by cooling a mixture of two hyperfine states of fermionic lithium atoms far below degeneracy. To tune the interaction between the constituents, we make use of a broad magnetic Feshbach resonance between the states. We achieve temperatures far in the degenerate regime that can be tuned by a trap release heating procedure. Being able to tune temperature and interaction allows us to access the whole BEC-BCS crossover regime and investigate related phenomena. \n\t \nOne key quantity across the crossover is the critical temperature of the thermal to superfluid phase transition that signals condensation of pairs. The critical temperature can be calculated in the limits of weak interactions, however, for strong interactions theoretical treatment is difficult. In this thesis, we use neural networks to explore the critical temperature in the whole crossover regime with unprecedented accuracy. We show that a supervisedly trained neural network can not only detect the critical temperature, but also distinguish between Cooper pairs and Feshbach molecules, which was not possible before. Moreover, we show that an unsupervisedly trained autoencoder network is able to determine the critical temperature without any external input other than time-of-flight pictures. \n\t \nAnother important quantity in the crossover regime is the superfluid gap parameter. We measure the gap by exciting the Higgs mode through radio-frequency modulation of the atom population. In the BCS limit, the frequency of the Higgs mode is given by twice the gap frequency. By observing the frequency dependent response of the system we can therefore measure the gap parameter. Towards strong interactions, the observed feature broadens, signalling an instability of the mode due to the gradual violation of the required particle-hole symmetry. \n\t \nExploring the non-equilibrium behaviour of a Fermi gas in the BEC-BCS crossover might hold the key to understand the formation dynamics of pairs and how to induce superconductivity in a system that does not exhibit superconductivity in its equilibrium state. In this work, we present two ways to expose the system to a sudden change of interaction, resulting in a non-equilibrium response. Firstly, we use a fast radio-frequency transfer of one of the hyperfine states into a different, third state. We observe dynamics on several timescales in the momentum distribution and condensate fraction. Secondly, we develop a new coil system that is able to change the magnetic field at the atom position by tens of Gauss within a few microseconds. We detail the construction, testing and alignment process and present investigations into the long-time response of the system. \n\t \nMachine learning procedures can not only be used for data analysis, but also to improve upon the control over experimental systems. In this work we present a novel approach to improve the detection and correction of experimental errors exponentially. We use two machine learning approaches, principal component analysis and small, fully connected neural networks to create an empirical model of the experimental setup. Using this model allows us to reduce the required amount of data for compensation of noise sources exponentially. We demonstrate both approaches in the context of micromotion compensation on a single trapped ytterbium ion in a radio-frequency Paul trap.

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In this thesis, the behavior of ultracold bosonic systems in external potentials is investigated. Such systems are typically realized as Bose-Einstein condensates, where dilute atomic gases cooled to extremely low temperatures exhibit collective quantum behavior. Because of the large degree of control they allow over the external potential and over the interaction parameters of the many-body system, Bose-Einstein condensates constitute a testing ground for the dedicated study of coherence, correlations, and quantum phase transitions in interacting bosonic systems. This thesis presents an investigation of the many-body physics of ultracold bosons, focusing specifically on how the many-body properties of these ultracold bosonic systems change with changing external potential, how they manifest themselves in experimentally accessible observables, and how these properties can be analyzed using both numerical many-body methods and data-driven approaches. The first part of this thesis focuses on the theoretical description of ultracold bosonic systems in external trapping potentials. Using the multiconfigurational time-dependent Hartree method for bosons (MCTDH-X), numerically exact simulations were performed that allow the calculation of reduced density matrices, natural orbitals, and correlation functions. These quantities were used to analyze the coherence properties and fragmentation of trapped bosonic systems. In particular, double-well systems were investigated as model scenarios in which the gradual formation of a central barrier leads to a redistribution of natural occupations and a transition from a condensed to a fragmented many-body state. In this context, we demonstrate the usefulness of single-shot images, which represent projective measurements of the many-body wave function, for the experimental investigation of the many-body physics of fragmenting system. Single-shot images can be simulated numerically using MCTDH-X, but they are more commonly obtained through experimental measurements. The possibility of extracting many-body information in an experimental context, where said many-body information is not otherwise accessible, is discussed. Supervised machine learning models were trained on simulated single-shot data sets to investigate whether information about the underlying many-body state can be inferred directly from measurement outcomes. The results show that machine learning models are capable of learning patterns in the single-shot images that correlate with properties of the underlying many-body state and can therefore predict density-related quantities with good accuracy. The second part of this thesis focuses on a joint theoretical and experimental investigation of a system of ultracold bosons coupled to an optical cavity. In this system, the atoms interact with a dynamically generated optical potential produced by the cavity field. We use a new theoretical framework that combines a mean-field treatment of the cavity field with a many-body description of the atomic degrees of freedom to be able to capture the emergence of a superradiant self-organized phase and the subsequent transition to a self-organized Mott-insulating state. Our simulations show good agreement with the experimental results, and we discuss where the use of a beyond mean-field treatment in the simulations becomes essential in describing the physics of the different involved phases and quantum states. In summary, the results presented in this thesis demonstrate how numerical many-body simulations and machine learning methods can be used to analyze experimentally accessible observables and to gain insight into the many-body physics of ultracold bosonic systems.
In this thesis, the behavior of ultracold bosonic systems in external potentials is investigated. Such systems are typically realized as Bose-Einstein condensates, where dilute atomic gases cooled to extremely low temperatures exhibit collective quantum behavior. Because of the large degree of control they allow over the external potential and over the interaction parameters of the many-body system, Bose-Einstein condensates constitute a testing ground for the dedicated study of coherence, correlations, and quantum phase transitions in interacting bosonic systems. This thesis presents an investigation of the many-body physics of ultracold bosons, focusing specifically on how the many-body properties of these ultracold bosonic systems change with changing external potential, how they manifest themselves in experimentally accessible observables, and how these properties can be analyzed using both numerical many-body methods and data-driven approaches. The first part of this thesis focuses on the theoretical description of ultracold bosonic systems in external trapping potentials. Using the multiconfigurational time-dependent Hartree method for bosons (MCTDH-X), numerically exact simulations were performed that allow the calculation of reduced density matrices, natural orbitals, and correlation functions. These quantities were used to analyze the coherence properties and fragmentation of trapped bosonic systems. In particular, double-well systems were investigated as model scenarios in which the gradual formation of a central barrier leads to a redistribution of natural occupations and a transition from a condensed to a fragmented many-body state. In this context, we demonstrate the usefulness of single-shot images, which represent projective measurements of the many-body wave function, for the experimental investigation of the many-body physics of fragmenting system. Single-shot images can be simulated numerically using MCTDH-X, but they are more commonly obtained through experimental measurements. The possibility of extracting many-body information in an experimental context, where said many-body information is not otherwise accessible, is discussed. Supervised machine learning models were trained on simulated single-shot data sets to investigate whether information about the underlying many-body state can be inferred directly from measurement outcomes. The results show that machine learning models are capable of learning patterns in the single-shot images that correlate with properties of the underlying many-body state and can therefore predict density-related quantities with good accuracy. The second part of this thesis focuses on a joint theoretical and experimental investigation of a system of ultracold bosons coupled to an optical cavity. In this system, the atoms interact with a dynamically generated optical potential produced by the cavity field. We use a new theoretical framework that combines a mean-field treatment of the cavity field with a many-body description of the atomic degrees of freedom to be able to capture the emergence of a superradiant self-organized phase and the subsequent transition to a self-organized Mott-insulating state. Our simulations show good agreement with the experimental results, and we discuss where the use of a beyond mean-field treatment in the simulations becomes essential in describing the physics of the different involved phases and quantum states. In summary, the results presented in this thesis demonstrate how numerical many-body simulations and machine learning methods can be used to analyze experimentally accessible observables and to gain insight into the many-body physics of ultracold bosonic systems.
Ultracold Bose gases as precise quantum simulators have emerged amongst the leaders in the current race  – a second quantum revolution  – toward the promise of unfathomable sensitivity, scope, and speed of a new era of technology. The only path leading to these advancements is through many-body descriptions, especially in regimes where interatomic interactions render many approximations incompatible with the physics. The research in this dissertation unlocks a piece of this mystery through investigations of many-body quantum tunneling of ultracold bosons in optical lattices. A key mechanism to characterizing the dynamics, matrix product state simulations equip the many-body toolbox with efficient optimization of large Hilbert spaces together with correlation and entropy measures that help clarify when semiclassical or mean-field approximations fail. In this thesis we obtain the following results. Macroscopic quantum tunneling escape of a Bose-Einstein condensate  – comprised of tens of thousands of 87Rb atoms  – from a single well, as portrayed through both experiment and theory, highlights non-exponential decay in the number of atoms trapped behind the barrier. Additionally, explicit symmetry breaking of a biperiodic optical lattice ring trap to a uniform one illustrates a critical symmetry-breaking strength at which the system transitions from a state of remembering to a state of forgetting its initial symmetry state; this symmetry memory indicates a new form of quantum dynamics that requires the quantum advantage for scaling up particle number and lattice sites. Extensive characterization of dynamical regimes in a bosonic Josephson junction  – underlaid by an optical lattice as described by the Bose-Hubbard model  – reveal substantial deviation of many body dynamics from the mean field or semiclassical predictions underlying the usual operating regime of Josephson junctions. Initial state population and phase yield insight into dynamic tunneling regimes of a quasi one-dimensional double well potential, through the Z2 spontaneous symmetry-breaking phase transition from Josephson oscillations to macroscopic self-trapping. We demonstrate that with increasing repulsive interaction strength, the U(1) superfluid-Mott insulator phase transition induces localized dynamics in the number density, such as particle-hole and soliton formation. Moreover, g^(2) correlations unveil a new dynamic regime  – the Fock flashlight. The new field of atomtronics  – or atomic circuits  – has emerged with many studies of weakly-interacting condensates. In contrast, and building on our work on many-body effects in the double wells underlying Josephson junctions, we present a proof-of-principle of a Mott-insulating atomtronic switch that requires strongly-interacting bosons. Through transient analysis, we reveal that hole conductance can be modulated via tuning interaction strength through a critical value, thus propelling the state to the next ``wedding cake'' layer of the Mott insulating structure. This critical interaction strength is a…
This thesis covers two fields of research carried out in the context of ultracold Fermi gases: Non-equilibrium physics in the BEC-BCS crossover and the use of machine learning methods in physics. \n\t \nThe BEC-BCS crossover is of particular interest for the investigation of low-temperature superconductivity and related many-body phenomena. We realise the BEC-BCS crossover experimentally by cooling a mixture of two hyperfine states of fermionic lithium atoms far below degeneracy. To tune the interaction between the constituents, we make use of a broad magnetic Feshbach resonance between the states. We achieve temperatures far in the degenerate regime that can be tuned by a trap release heating procedure. Being able to tune temperature and interaction allows us to access the whole BEC-BCS crossover regime and investigate related phenomena. \n\t \nOne key quantity across the crossover is the critical temperature of the thermal to superfluid phase transition that signals condensation of pairs. The critical temperature can be calculated in the limits of weak interactions, however, for strong interactions theoretical treatment is difficult. In this thesis, we use neural networks to explore the critical temperature in the whole crossover regime with unprecedented accuracy. We show that a supervisedly trained neural network can not only detect the critical temperature, but also distinguish between Cooper pairs and Feshbach molecules, which was not possible before. Moreover, we show that an unsupervisedly trained autoencoder network is able to determine the critical temperature without any external input other than time-of-flight pictures. \n\t \nAnother important quantity in the crossover regime is the superfluid gap parameter. We measure the gap by exciting the Higgs mode through radio-frequency modulation of the atom population. In the BCS limit, the frequency of the Higgs mode is given by twice the gap frequency. By observing the frequency dependent response of the system we can therefore measure the gap parameter. Towards strong interactions, the observed feature broadens, signalling an instability of the mode due to the gradual violation of the required particle-hole symmetry. \n\t \nExploring the non-equilibrium behaviour of a Fermi gas in the BEC-BCS crossover might hold the key to understand the formation dynamics of pairs and how to induce superconductivity in a system that does not exhibit superconductivity in its equilibrium state. In this work, we present two ways to expose the system to a sudden change of interaction, resulting in a non-equilibrium response. Firstly, we use a fast radio-frequency transfer of one of the hyperfine states into a different, third state. We observe dynamics on several timescales in the momentum distribution and condensate fraction. Secondly, we develop a new coil system that is able to change the magnetic field at the atom position by tens of Gauss within a few microseconds. We detail the construction, testing and alignment process and present investigations into the long-time response of the system. \n\t \nMachine learning procedures can not only be used for data analysis, but also to improve upon the control over experimental systems. In this work we present a novel approach to improve the detection and correction of experimental errors exponentially. We use two machine learning approaches, principal component analysis and small, fully connected neural networks to create an empirical model of the experimental setup. Using this model allows us to reduce the required amount of data for compensation of noise sources exponentially. We demonstrate both approaches in the context of micromotion compensation on a single trapped ytterbium ion in a radio-frequency Paul trap.
Advances in experiments on dilute ultracold atomic gases have given us access to highly tunable quantum systems. In particular, there have been substantial improvements in achieving different kinds of interaction between atoms. As a result, utracold atomic gases oer an ideal platform to simulate many-body phenomena in condensed matter physics, and engineer other novel phenomena that are a result of the exotic interactions produced between atoms. In this dissertation, I present a series of studies that explore the physics of dilute ultracold atomic gases in different settings. In each setting, I explore a different form of the inter-particle interaction. Motivated by experiments which induce artificial spin-orbit coupling for cold fermions, I explore this system in my first project. In this project, I propose a method to perform universal quantum computation using the excitations of interacting spin-orbit coupled fermions, in which effective p-wave interactions lead to the formation of a topological superfluid. Motivated by experiments which explore the physics of exotic interactions between atoms trapped inside optical cavities, I explore this system in a second project. I calculate the phase diagram of lattice bosons trapped in an optical cavity, where the cavity modes mediates effective global range checkerboard interactions between the atoms. I compare this phase diagram with one that was recently measured experimentally. In two other projects, I explore quantum simulation of condensed matter phenomena due to spin-dependent interactions between particles. I propose a method to produce tunable spin-dependent interactions between atoms, using an optical Feshbach resonance. In one project, I use these spin-dependent interactions in an ultracold Bose-Fermi system, and propose a method to produce the Kondo model. I propose an experiment to directly observe the Kondo effect in this system. In another project, I propose using lattice bosons with a large hyperfine spin, which have Feshbach-induced spin-dependent interactions, to produce a quantum dimer model. I propose an experiment to detect the ground state in this system. In a final project, I develop tools to simulate the dynamics of fermionic superfluids in which fermions interact via a short-range interaction.
During the past year of the MCTDHB project at the HLRS, we continued to strive and conquest further applications, developments, and expansion of the MultiConfigurational Time-Dependent Hartree for Bosons (MCTDHB) method in the context of ultracold atomic systems. We also announce the MCTDH-X package, the Multiconfigurational Time-Dependent Hartree for Indistinguishable Particles X package, which is able to treat identical bosons and fermions, with or without spin/internal degrees of freedom, alike. Here we report on a plethora of results and versatile applications which include: (i) single-shot imaging of fluctuating vortices in a fragmented Bose-Einstein condensate (BEC); (ii) the many-body tunneling and fragmetnation of vortices in 2D trapped BECs; (iii) the transition from vortices to solitonic vortices in 2D trapped BECs; (iv) the variance of a many-particle system being very sensitive to correlations even in the infinite-particle limit; (v) the consequences of the latter on the out-of-equilibrium uncertainty product of an evolving BEC; (vi) the mechanism of tunneling to open space of a few interacting polarized fermions; and (vii) composite fragmentation of multi-components BECs (i.e., with internal degrees of freedom). These are all exciting results made throughout the allocation of computer time by the HLRS to the MCTDHB project. Finally, further perspectives and future research plans are briefly discussed.
Quantum state tomography provides a powerful and versatile framework for characterizing quantum states across diverse quantum systems. However, tomography is still largely restricted to systems with a few degrees of freedom, while for continuous systems, it is typically tailored to quantum-optical platforms. For other many-body systems described by continuous quantum fields such as ultracold atomic gases, tomographic technique is not as well-established. The present thesis addresses this gap by providing new approaches to measurement and tomography of ultracold Bose gases trapped in one (1D) and two dimensions (2D). These systems serve as analog quantum field theory (QFT) simulators and exhibit novel physics absent in higher dimensions. We begin by systematically assessing state-of-the-art method for extracting the relative phase field in parallel 1D Bose gases with matter-wave interference. In particular, we derive a formula for the systematic phase shift due to longitudinal dynamics, a factor that is often ignored in previous modeling of the measurement. We further examine how the single-shot readout error propagates to correlation and distribution functions of the relative phase. Then, we broaden the scope of experimentally accessible quantities by developing a new methodology to extract the common phase field---the sum of the phase fields of the two parallel gases---from the already available density ripple data. We rigorously benchmark this new readout with numerical simulations and experimental data in 1D systems and further generalize it to 2D systems. By combining the relative and common phases information, we improve Gaussian state tomography in parallel 1D Bose gases and apply it to probe new physical phenomena in quantum field simulators. Specifically, we focus on two applications: (i) field-space entanglement detection at finite temperatures and out of equilibrium, and (ii) probing non-linear relaxation in near-integrable quantum systems. This thesis bridges theory and experiment in the simulation of QFTs and reveals new opportunities for exploring many-body quantum effects in ultracold bosonic gases.