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Innovations in Machine, Engineering, and Digital Conference (IMED)

Quantum Computing for High-Dimensional Genomic Data Processing in Precision Medicine

Abhinav Pandey, Tameem Albassam, Kamal Sahib Mizal, Rasha Khalaf, Ali Ihsan Alanssari, Haany Muaain

Published Mar 6, 2026• 1 citation
Publisher

Abstract

High-quality processing and interpretation of large-scale genomic datasets in the high dimensionality required to reach treatment determinations within precision medicine hinges on discovered computational approaches, but computational approaches are often unsuccessful in processing information at this level, due to difficulties in processing high volumes of data coupled with noise and high dimensionality, usually becoming computationally slow and inconclusive throughout the process. We propose a new framework incorporating quantum computing to enable and enhance engagement with genomic data throughout clinically relevant scenarios. With the incorporation of existing quantum algorithms that facilitate dimensionality reduction, clustering, and classification, or proposed frameworks may improve disease biomarker detection and patient stratification capabilities. Our framework will incorporate a variety of quantum encoding methods and hybrid designs to minimize the classical limitations on these datasets, leading to a rapid clarification of the ontogeny of genomic datasets, and thus additionally providing the user with more clinically relevant data to interpret. Our results presented a significant increase in processing times and plausibility to clinical relevance, opening trajectories toward real-time, scalable, genomic diagnostics, providing a clear path toward confidence to broaden practice using quantum computing throughout precision medicine with genomic datasets as a basis for patient treatment.

DOI
10.1109/imed68921.2026.11484199

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The convergence of quantum computing and artificial intelligence (AI) presents a paradigm shift in healthcare, revolutionizing complex biological simulations, genomic data processing, and drug discovery innovations. Traditional computational methods, despite their advancements, often struggle with the sheer scale and complexity of biological data, limiting the speed and accuracy of medical breakthroughs. Quantum computing, with its ability to process vast datasets exponentially faster than classical computers, coupled with AI's predictive capabilities, offers a transformative solution for accelerating biomedical research and clinical applications. This paper explores quantum machine learning’s role in optimizing AI-driven molecular dynamics simulations for drug discovery. By leveraging quantum-enhanced algorithms, researchers can rapidly model molecular interactions, analyze drug-receptor binding affinities, and predict pharmacokinetics with unprecedented precision. Additionally, we examine quantum-assisted deep learning models for deciphering intricate biological mechanisms such as protein folding, epigenetic modifications, and metabolic pathway interactions, enabling more accurate predictions of disease progression and therapeutic targets. Furthermore, the integration of AI-quantum hybrid models in clinical diagnostics and imaging analytics is redefining personalized medicine. Quantum-enhanced deep learning facilitates high-resolution medical imaging, real-time anomaly detection, and optimized radiomic feature extraction, leading to early and more accurate disease diagnosis. In genomics, quantum computing significantly accelerates whole-genome sequencing and mutation analysis, paving the way for tailored treatment strategies based on an individual's genetic profile. Despite its promise, challenges such as quantum hardware limitations, data coherence issues, and ethical considerations must be addressed to ensure the practical implementation of quantum-AI healthcare solutions. This paper provides a comprehensive analysis of the potential, challenges, and future directions of quantum-AI synergy in transforming modern healthcare.
The integration of quantum computing and artificial intelligence (AI) holds transformative potential for healthcare by enabling adaptive diagnostic models that evolve with dynamic patient data and expanding medical knowledge. Leveraging quantum principles such as superposition and entanglement allows these models to efficiently process complex, high-dimensional healthcare datasets, improving precision in disease diagnosis and personalized treatment strategies. The proposed hybrid architecture combines quantum machine learning algorithms with classical AI components for interpretability and continuous refinement through real-time data ingestion, mitigating model drift and maintaining clinical relevance. This approach demonstrates significant promise in enhancing diagnostic accuracy and fostering intelligent healthcare solutions responsive to individual patient needs and medical advances [1]– [3].
Quantum computing offers unprecedented computational power by exploiting quantum mechanical phenomena such as superposition and entanglement. Genomic medicine, the field concerned with using genomic information for diagnosis, treatment, and prevention of disease, is increasingly data intensive, with vast datasets, complex pattern recognition tasks, and computationally expensive algorithms. This article explores how quantum computing can transform genomic medicine by accelerating sequence alignment, improving variant calling, enabling efficient drug discovery, and facilitating personalized therapy design. While potential breakthroughs abound, there are challenges: quantum hardware limitations, error rates, ethical and privacy implications, and integration into existing healthcare systems. We propose a multidisciplinary framework that unites physics, computer science, and healthcare to realize these potentials. The article concludes with recommended research directions, policy implications in the Pakistani context, and a roadmap toward clinical applications.