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EPJ Quantum Technology

Spectral phase encoding for quantum kernel methods

Pablo Herrero Gómez, Antonio Manuel Jimeno-Morenilla, David Muñoz-Hernández, Higinio Mora

Published Apr 22, 2026• 1 citation
Publisher

Abstract

Abstract Quantum kernel methods are promising for near-term quantum machine learning, yet their behavior under data corruption remains insufficiently understood. We analyze how quantum feature constructions degrade under controlled additive noise. We introduce Spectral Phase Encoding (SPE), a hybrid construction combining a discrete Fourier transform (DFT) front-end with a diagonal phase-only embedding. Within a unified framework, we compare the resulting DFT-based quantum-kernel pipeline () against alternative quantum variants based on principal component analysis (PCA) and random projections (RP), as well as classical support vector machine (SVM) baselines, under identical clean-data hyperparameter selection. Robustness is quantified via dataset fixed-effects regression with wild cluster bootstrap inference across heterogeneous real-world datasets. Across the matched quantum family, DFT-based preprocessing yields the smallest degradation rate as noise increases, with statistically supported slope differences relative to PCA and RP. Compared with classical baselines, shows degradation comparable to linear SVM and more favorable than radial basis function (RBF) SVM under the present tuning protocol. Hardware experiments further confirm that the resulting overlap-estimation primitive remains executable and numerically stable. Taken together, these results support a robustness-first view of quantum kernel evaluation and show that, within the controlled pipeline family studied here, structure-aligned spectral preprocessing combined with a shared diagonal quantum embedding can yield slower degradation under corruption.

DOI
10.1140/epjqt/s40507-026-00509-8

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Abstract Quantum kernel methods are promising for near-term quantum machine learning, yet their behavior under data corruption remains insufficiently understood. We analyze how quantum feature constructions degrade under controlled additive noise. We introduce Spectral Phase Encoding (SPE), a hybrid construction combining a discrete Fourier transform (DFT) front-end with a diagonal phase-only embedding. Within a unified framework, we compare the resulting DFT-based quantum-kernel pipeline () against alternative quantum variants based on principal component analysis (PCA) and random projections (RP), as well as classical support vector machine (SVM) baselines, under identical clean-data hyperparameter selection. Robustness is quantified via dataset fixed-effects regression with wild cluster bootstrap inference across heterogeneous real-world datasets. Across the matched quantum family, DFT-based preprocessing yields the smallest degradation rate as noise increases, with statistically supported slope differences relative to PCA and RP. Compared with classical baselines, shows degradation comparable to linear SVM and more favorable than radial basis function (RBF) SVM under the present tuning protocol. Hardware experiments further confirm that the resulting overlap-estimation primitive remains executable and numerically stable. Taken together, these results support a robustness-first view of quantum kernel evaluation and show that, within the controlled pipeline family studied here, structure-aligned spectral preprocessing combined with a shared diagonal quantum embedding can yield slower degradation under corruption.
Quantum kernel methods are promising for near-term quantum ma- chine learning, yet their behavior under data corruption remains insuf- ficiently understood. We analyze how quantum feature constructions degrade under controlled additive noise. We introduce Spectral Phase Encoding (SPE), a hybrid construc- tion combining a discrete Fourier transform (DFT) front-end with a diagonal phase-only embedding aligned with the geometry of diagonal quantum maps. Within a unified framework, we compare QK-DFT against alternative quantum variants (QK-PCA, QK-RP) and classi- cal SVM baselines under identical clean-data hyperparameter selection, quantifying robustness via dataset fixed-effects regression with wild cluster bootstrap inference across heterogeneous real-world datasets. Across the quantum family, DFT-based preprocessing yields the smallest degradation rate as noise increases, with statistically sup- ported slope differences relative to PCA and RP. Compared to classical baselines, QK-DFT shows degradation comparable to linear SVM and more stable than RBF SVM under matched tuning. Hardware exper- iments confirm that SPE remains executable and numerically stable for overlap estimation. These results indicate that robustness in quan- tum kernels depends critically on structure-aligned preprocessing and its interaction with diagonal embeddings, supporting a robustness-first perspective for NISQ-era quantum machine learning.
Quantum Support Vector Regression (QSVR) has become an exciting prospect of modeling the nonlinear relationship of high-dimensional data by using a kernel method. Nevertheless, the overall assessment of the whole QSVR pipeline, including preprocessing and dimensionality reduction, quantum embedding, shot-based kernel estimation, and noise-aware analysis, is not widespread. This paper introduces a working Python implementation of the QSVR framework that combines a principal component analysis (PCA)-to-qubit embedding, a 1024-shot quantum kernel implementation, and 1024-shot 1/2-SVR optimization on financial time-series and credit transaction regression problems. Classical features are normalized and minimized to around 20 major features that capture 95% of the variance in the data before being angle-based RY embedded using a depth-3 entangling circuit. Quantum kernels are built through state-overlap estimation on finite-shot constraints, and they are trained by cross-validated optimization. The robustness of the proposed framework is measured in both noise-free and simulator-generated noise conditions in case of controlled noise approximations. Experimentation indicates improved regression performance than that of an RBF-SVR baseline with the same preprocessing and validation conditions. The suggested workflow designates the concept of reproducibility, benchmarking control, and feasible noise-conscious evaluation, which offers a systematic reference structure to subsequent research within near-term quantum machine learning.
Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive empirical study of quantum kernel support vector machines (QSVMs) across nine binary classification datasets, four quantum feature maps, three classical kernels, and multiple noise models, totalling 970 experiments with strict nested cross-validation. Our analysis spans four phases: (i) statistical significance testing, revealing that none of 29 pairwise quantum-classical comparisons reach significance at α=0.05α= 0.05α=0.05; (ii) learning curve analysis over six training fractions, showing steeper quantum slopes on six of eight datasets that nonetheless fail to close the gap to the best classical baseline; (iii) hardware validation on IBM ibm_fez (Heron r2), demonstrating kernel fidelity r≥0.976r \geq 0.976r≥0.976 across six experiments; and (iv) seed sensitivity analysis confirming reproducibility (mean CV 1.4%). A Kruskal-Wallis factorial analysis reveals that dataset choice dominates performance variance (ε2=0.73\varepsilon^2 = 0.73ε2=0.73), while kernel type accounts for only 9%. Spectral analysis offers a mechanistic explanation: current quantum feature maps produce eigenspectra that are either too flat or too concentrated, missing the intermediate profile of the best classical kernel, the radial basis function (RBF). Quantum kernel training (QKT) via kernel-target alignment yields the single competitive result -- balanced accuracy 0.968 on breast cancer -- but with ~2,000x computational overhead. Our findings provide actionable guidelines for quantum kernel research. The complete benchmark suite is publicly available to facilitate reproduction and extension.
Abstract Quantum kernel approaches have been touted as a possible way to gain representational advantages over classical machine learning techniques however most comparative work only looks at classification accuracy leaving the geometric structure of the kernels unexplored. We carry out a comprehensive kernel-level comparison between classical support vector machines (SVMs) with radial basis function (RBF) kernels and quantum support vector classifiers that use ZZFeatureMap and PauliFeatureMap fidelity kernels, tested on two synthetic and two real-world two-dimensional datasets. After applying centred kernel alignment(CKA), the Hilbert-Schmidt Independence Criterion (HSIC), eigenvalue spectrum analysis, spectral entropy, and effective rank. Firstly, shallow quantum kernels form a moderately aligned band with RBF across all datasets and conditions that is quite stable (CKA : 0.41 → 0.57), whereas going deeper in the circuit to two repetitions largely mismatches both alignment and accuracy with no representational gain (e.g. Iris cross-validation accuracy: 0.920 → 0.670, p = 0.0004). Secondly, depolarising noise surprisingly increases the quantum-classical kernel alignment, which means that near-term hardware kernels are structurally closer to RBF than noiseless simulations suggest. Thirdly, the scenarios that lead to maximum apparent quantum-classical divergence, small sample sizes and low noise, are precisely those most used to benchmark quantum kernel advantage. Kernel-level structural analysis is essential for meaningful evaluation of quantum machine learning methods.
Abstract Kernel principal component analysis (kernel PCA) is a nonlinear dimensionality reduction technique that employs kernel functions to map data into a high-dimensional feature space, thereby extending the applicability of linear PCA to nonlinear data and facilitating the extraction of informative principal components. However, kernel PCA necessitates the manipulation of large-scale matrices, leading to high computational complexity and posing challenges for efficient implementation in big data environments. Quantum computing has recently been integrated with kernel methods in machine learning, enabling effective analysis of input data within intractable feature spaces. Although existing quantum kernel PCA proposals promise exponential speedups, they impose stringent requirements on quantum hardware that are challenging to fulfill. In this work, we propose a quantum algorithm for kernel PCA by establishing a connection between quantum kernel methods and block encoding, thereby diagonalizing the centralized kernel matrix on a quantum computer. The query complexity is logarithmic with respect to the size of the data vector, D , and linear with respect to the size of the dataset. An exponential speedup could be achieved when the dataset consists of a few high-dimensional vectors, wherein the dataset size is polynomial in log ⁡ ( D ) , with D being significantly large. In contrast to existing work, our algorithm enhances the efficiency of quantum kernel PCA and reduces the requirements for quantum hardware. Furthermore, we have also demonstrated that the algorithm based on block encoding matches the lower bound of query complexity, indicating that our algorithm is nearly optimal. Our research has laid down new pathways for developing quantum machine learning algorithms aimed at addressing tangible real-world problems and demonstrating quantum advantages within machine learning.
Quantum kernel methods are the most concrete near-term proposal for quantum machine learning on classical data, yet published benchmarks disagree on whether they outperform tuned classical kernels, and the disagreement cannot be resolved from the literature because the comparisons are not protocol-controlled. We argue that the obstacle is one of measurement, not theory: the usual setup fixes the quantum feature map's data scaling while grid-searching the classical kernel's hyperparameters, recomputes nothing per fold, and reports cost in simulator time. We therefore treat the comparison itself as the object of study and impose three controls. The bandwidth is tuned on the same grid budget as the classical γγγ, the kernel is recomputed inside every fold from fold-fitted preprocessing, and cost is counted in hardware circuit evaluations. On top of these we run a factorial design of 324 cells in which dimensionality, training size, class separability and data structure are explicit covariates, together with four standard datasets, a shots-versus-gate-noise ablation, and a cost sweep. The dominant effect we measure is not quantum: tuning the feature map's bandwidth is worth 0.120 accuracy on synthetic data and 0.339 on real data, exceeding every quantum-classical difference we observe. Tuned quantum kernels are then statistically indistinguishable from a tuned RBF on all four real datasets. The advantage on synthetic data is confined almost entirely to data generated by the feature map itself, and it shrinks with dimensionality (-0.0045 per qubit) while growing with sample size. Finite sampling costs an order of magnitude more accuracy than gate and readout noise, and a fidelity kernel needs 5×1075\times10^{7}5×107 circuits at n = 10,000. Protocol variance is thus sufficient to explain the field's contradictory conclusions.