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Beyond accuracy: A Kernel-level Comparative Analysis of Quantum and Classical Support Vector Machines

Shahryar Rza

Published Mar 27, 2026• 1 citation
Publisher

Abstract

Abstract Quantum kernel approaches have been touted as a possible way to gain representational advantages over classical machine learning techniques however most comparative work only looks at classification accuracy leaving the geometric structure of the kernels unexplored. We carry out a comprehensive kernel-level comparison between classical support vector machines (SVMs) with radial basis function (RBF) kernels and quantum support vector classifiers that use ZZFeatureMap and PauliFeatureMap fidelity kernels, tested on two synthetic and two real-world two-dimensional datasets. After applying centred kernel alignment(CKA), the Hilbert-Schmidt Independence Criterion (HSIC), eigenvalue spectrum analysis, spectral entropy, and effective rank. Firstly, shallow quantum kernels form a moderately aligned band with RBF across all datasets and conditions that is quite stable (CKA : 0.41 → 0.57), whereas going deeper in the circuit to two repetitions largely mismatches both alignment and accuracy with no representational gain (e.g. Iris cross-validation accuracy: 0.920 → 0.670, p = 0.0004). Secondly, depolarising noise surprisingly increases the quantum-classical kernel alignment, which means that near-term hardware kernels are structurally closer to RBF than noiseless simulations suggest. Thirdly, the scenarios that lead to maximum apparent quantum-classical divergence, small sample sizes and low noise, are precisely those most used to benchmark quantum kernel advantage. Kernel-level structural analysis is essential for meaningful evaluation of quantum machine learning methods.

DOI
10.21203/rs.3.rs-9057443/v1

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Abstract Quantum kernel approaches have been touted as a possible way to gain representational advantages over classical machine learning techniques however most comparative work only looks at classification accuracy leaving the geometric structure of the kernels unexplored. We carry out a comprehensive kernel-level comparison between classical support vector machines (SVMs) with radial basis function (RBF) kernels and quantum support vector classifiers that use ZZFeatureMap and PauliFeatureMap fidelity kernels, tested on two synthetic and two real-world two-dimensional datasets. After applying centred kernel alignment(CKA), the Hilbert-Schmidt Independence Criterion (HSIC), eigenvalue spectrum analysis, spectral entropy, and effective rank. Firstly, shallow quantum kernels form a moderately aligned band with RBF across all datasets and conditions that is quite stable (CKA : 0.41 → 0.57), whereas going deeper in the circuit to two repetitions largely mismatches both alignment and accuracy with no representational gain (e.g. Iris cross-validation accuracy: 0.920 → 0.670, p = 0.0004). Secondly, depolarising noise surprisingly increases the quantum-classical kernel alignment, which means that near-term hardware kernels are structurally closer to RBF than noiseless simulations suggest. Thirdly, the scenarios that lead to maximum apparent quantum-classical divergence, small sample sizes and low noise, are precisely those most used to benchmark quantum kernel advantage. Kernel-level structural analysis is essential for meaningful evaluation of quantum machine learning methods.
Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive empirical study of quantum kernel support vector machines (QSVMs) across nine binary classification datasets, four quantum feature maps, three classical kernels, and multiple noise models, totalling 970 experiments with strict nested cross-validation. Our analysis spans four phases: (i) statistical significance testing, revealing that none of 29 pairwise quantum-classical comparisons reach significance at α=0.05α= 0.05α=0.05; (ii) learning curve analysis over six training fractions, showing steeper quantum slopes on six of eight datasets that nonetheless fail to close the gap to the best classical baseline; (iii) hardware validation on IBM ibm_fez (Heron r2), demonstrating kernel fidelity r≥0.976r \geq 0.976r≥0.976 across six experiments; and (iv) seed sensitivity analysis confirming reproducibility (mean CV 1.4%). A Kruskal-Wallis factorial analysis reveals that dataset choice dominates performance variance (ε2=0.73\varepsilon^2 = 0.73ε2=0.73), while kernel type accounts for only 9%. Spectral analysis offers a mechanistic explanation: current quantum feature maps produce eigenspectra that are either too flat or too concentrated, missing the intermediate profile of the best classical kernel, the radial basis function (RBF). Quantum kernel training (QKT) via kernel-target alignment yields the single competitive result -- balanced accuracy 0.968 on breast cancer -- but with ~2,000x computational overhead. Our findings provide actionable guidelines for quantum kernel research. The complete benchmark suite is publicly available to facilitate reproduction and extension.
Quantum machine learning has emerged as a promising paradigm that leverages quantum computational principles to potentially outperform classical approaches on specific learning tasks. This paper presents a comprehensive empirical investigation comparing Quantum Machine Learning (QML), specifically Quantum Support Vector Machines (QSVM) against Classical Machine Learning (CML) baselines including Logistic Regression, K Nearest Neighbors and classical SVMs. We implement quantum kernel methods using variational quantum circuits with angle embedding, IQP and ZZ feature maps on datasets exhibiting varying structural complexity. Our experiments on synthetic quantum generated datasets (Quantum Parity, Quantum Entanglement, Quantum Interference) demonstrate that QSVM achieves superior classification accuracy with improvements ranging from 2.9 % to 60 % over the best classical baselines achieving a 55.6 % overall win rate. Notably, on the Quantum Parity dataset, QSVM consistently outperformed all classical models across multiple configurations. On real-world benchmark datasets (Breast Cancer, Iris, Wine), QSVM Angle achieved 88% accuracy on Breast Cancer compared to 76% for classical SVM Linear a 15.8 % relative improvement while matching the best classical performance on Iris(100%)(100 \%)(100%)and Wine(92%)(92 \%)(92%). All experiments were conducted using quantum circuit simulation on classical hardware. These results provide empirical evidence that quantum kernel methods offer meaningful advantages over classical approaches on datasets with complex feature interactions. We discuss the theoretical foundations of these improvements including quantum feature space expressivity and kernel alignment.
Radial basis function (RBF) networks are expanded to incorporate quantum kernel functions enabling a new type of hybrid quantum-classical machine learning algorithm. Using this approach, synthetic examples are introduced which allow for proof of concept on interpolation and classification applications. Quantum kernels have primarily been applied to support vector machines (SVMs), however the quantum kernel RBF network offers potential benefit over quantum kernel based SVMs due to the RBF networks ability to perform multi-class classification natively compared to the standard implementation of the SVM.
Reproducibility archive (code + manuscript) for the paper "Benchmarking Quantum Kernel Support Vector Machines Against Classical Baselines on Tabular Data: A Rigorous Empirical Study with Hardware Validation" (arXiv:2604.18837). The archive contains the full Python benchmark framework, experiment configurations, unit tests, and the compiled manuscript. Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive empirical study of quantum kernel support vector machines (QSVMs) across nine binary classification datasets, four quantum feature maps, three classical kernels, and multiple noise models, totalling 970 experiments with strict nested cross-validation. Our analysis spans four phases: (i) statistical significance testing; (ii) learning curve analysis; (iii) hardware validation on IBM ibm_fez (Heron r2); and (iv) seed sensitivity analysis. A Kruskal–Wallis factorial analysis reveals that dataset choice dominates performance variance (ε2=0.73\varepsilon^2 = 0.73ε2=0.73), while kernel type accounts for only 9%. Spectral analysis offers a mechanistic explanation: current quantum feature maps produce eigenspectra that are either too flat or too concentrated, missing the intermediate profile of the best classical kernel (RBF). The complete benchmark suite is publicly available to facilitate reproduction and extension.
Quantum kernel methods have emerged as a promising approach for leveraging high-dimensional feature spaces in machine learning, particularly in domains where classical kernel methods face scalability limitations. In this work, we present the first large-scale study of fidelity-quantum-kernel support vector machines for hyperspectral data classification without requiring heavy prior feature selection or dimensionality reduction. By simulating quantum kernels using tensor network contraction techniques and GPU acceleration, we overcome the computational bottlenecks traditionally associated with quantum models, achieving quadratic scaling O(n^2) in the number of qubits. Our approach enables the evaluation of quantum kernels on hyperspectral data with hundreds of spectral bands, aligning quantum feature spaces with real-world remote sensing applications. We provide an in-depth analysis of kernel bandwidth optimization, demonstrating its crucial role in mitigating exponential concentration effects and ensuring the model's ability to generalize. Experimental results on binary classification (Indian Pines and Methane Detection) and multiclass classification (Indian Pines) demonstrate that quantum kernels achieve competitive performance compared to a broad range of state-of-the-art classical baselines. As illustrative cases, on four 50-band splits selected from Indian Pines, the quantum model achieved a 78.0 pm6.2% accuracy for a binary classification task compared to 72.0 pm5.0% for the standard radial basis function (RBF) kernel. For a four-class classification task, the quantum kernel reached 83.3 pm3.1% accuracy, outperforming several state-of-the-art baselines. On five 75-band splits selected from the Methane Detection dataset, the quantum approach yielded 58.5\pm5.0% accuracy versus 55.1\pm2.5% for the classical counterpart...
Quantum kernel methods are the most concrete near-term proposal for quantum machine learning on classical data, yet published benchmarks disagree on whether they outperform tuned classical kernels, and the disagreement cannot be resolved from the literature because the comparisons are not protocol-controlled. We argue that the obstacle is one of measurement, not theory: the usual setup fixes the quantum feature map's data scaling while grid-searching the classical kernel's hyperparameters, recomputes nothing per fold, and reports cost in simulator time. We therefore treat the comparison itself as the object of study and impose three controls. The bandwidth is tuned on the same grid budget as the classical γγγ, the kernel is recomputed inside every fold from fold-fitted preprocessing, and cost is counted in hardware circuit evaluations. On top of these we run a factorial design of 324 cells in which dimensionality, training size, class separability and data structure are explicit covariates, together with four standard datasets, a shots-versus-gate-noise ablation, and a cost sweep. The dominant effect we measure is not quantum: tuning the feature map's bandwidth is worth 0.120 accuracy on synthetic data and 0.339 on real data, exceeding every quantum-classical difference we observe. Tuned quantum kernels are then statistically indistinguishable from a tuned RBF on all four real datasets. The advantage on synthetic data is confined almost entirely to data generated by the feature map itself, and it shrinks with dimensionality (-0.0045 per qubit) while growing with sample size. Finite sampling costs an order of magnitude more accuracy than gate and readout noise, and a fidelity kernel needs 5×1075\times10^{7}5×107 circuits at n = 10,000. Protocol variance is thus sufficient to explain the field's contradictory conclusions.