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Quantum Computing for Chemistry: From Quantum Computing with Molecules to Algorithmic Design

Phillip W. K. Jensen

Published Nov 1, 2022• 0 citations
OpenAlex

Abstract

Determining properties of molecules and materials is one of the premier applications of quantum computing. A major question in the thesis is: how might we use long- and near-term quantum computers to solve problems of chemical interest? First, we give an overview of the standard model in electronic structure theory. Electronic structure methods have been improved significantly in the last decades; however, it is still a non-trivial task to fit experimental results for complex molecular systems. Second, we introduce quantum computation and quantum algorithms as an alternative device to solve the electronic structure problem. In the remaining part of the thesis, we describe the research projects. The thesis covers two (rather different) research directions: software and hardware projects. For the software part, we contribute with two new algorithms: Phase-Estimation Interval Target Energy Readout (PHILTER) and Recursive Variational Series Estimation (RVSE), where both are designed to be run on a quantum digital computer and extract materials and molecular properties. The PHILTER algorithm is a modification of the Quantum Phase Estimation and is designed to compute excited state energies within a target energy-interval for cases where good approximations for the states in the target energy-interval are either unknown or hard to prepare. For the RVSE algorithm, we pose the question: how might we use imperfect near-term quantum computers to solve problems of practical value? In this work, we introduce a method to compute expectation values of general functions of a Hamiltonian with respect to an input state using low depth quantum circuits suitable for noisy intermediate-scale quantum computers. For the hardware part, we propose a new chemical quantum computer by using molecular electronics as a basis for quantum computing. In this work, we pose the question: can scattering of electrons in molecules produce quantum gates? We construct one-qubit gates using one-electron scattering in molecules, and two-qubit controlled-phase gates using electron-electron scattering along metallic leads. We show initial applications of the framework by illustrating one-qubit gates using the molecular electronic structure of molecular hydrogen as a baseline model.

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One of the first practical applications of quantum computers is expected to be molecular modelling. Performing this task would profoundly affect areas such as chemistry, materials science and drug synthesis. Modelling of molecules, which are classically intractable, can be achieved with just over $30$ qubits, whereas state of the art quantum computers already have more than $50$ qubits. The Variational Quantum Eigensolver (VQE) algorithm and VQE based protocols, are promising candidates to enable this task on emerging Noisy Intermediate-Scale Quantum (NISQ) computers. These protocols require short quantum circuits and short coherence times, and are particularly resilient to quantum errors. Nevertheless, there is still a significant gap between the accuracy and the coherence times of current NISQ computers, and the hardware requirements of VQE protocols to simulate practically interesting molecules. In this thesis, I present my contribution to narrowing this gap by developing VQE protocols for molecular modelling that are less demanding on quantum hardware. The VQE relies on the Rayleigh-Ritz variational principle to estimate the eigenvalues of a Hamiltonian operator, by minimizing its expectation value with respect to a trial quantum state, prepared by an ansatz. A major challenge for the practical realisation of VQE protocols on NISQ computers is to construct an ansatz that: (1) can accurately approximate the eigenstates of the Hamiltonian; (2) is easy to optimize; and (3) can be implemented by a shallow circuit, within the capabilities of a NISQ computer. The most widely used, unitary coupled cluster (UCC), type of ans\"atze mathematically correspond to a product of unitary evolutions of fermionic excitation operators. Owing to their fermionic structure, UCC ans\"atze preserve the symmetries of electronic wavefunctions, and thus are accurate and easy to optimize. Nevertheless, UCC ans\"atze are implemented by high depth circuits, which severely limit the size of the molecules that can be reliably simulated on NISQ computers. In this thesis, I begin by constructing efficient quantum circuits to perform evolutions of fermionic excitation operators. The circuits are optimized in the number of two-qubit entangling gates, which are the current bottleneck of NISQ computers. Compared to the standard circuits used to implement evolutions of fermionic excitation operators, the circuits derived in this thesis reduce the number of two-qubit entangling gates by more than $70\%$ on average. As an intermediate result, I also derive efficient circuits to perform evolutions of qubit excitation operators (excitation operators that account for qubit, rather than fermionic commutation relations). 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Determining properties of molecules and materials is one of the premier applications of quantum computing. A major question in the thesis is: how might we use long- and near-term quantum computers to solve problems of chemical interest? First, we give an overview of the standard model in electronic structure theory. Electronic structure methods have been improved significantly in the last decades; however, it is still a non-trivial task to fit experimental results for complex molecular systems. Second, we introduce quantum computation and quantum algorithms as an alternative device to solve the electronic structure problem. In the remaining part of the thesis, we describe the research projects. The thesis covers two (rather different) research directions: software and hardware projects. For the software part, we contribute with two new algorithms: Phase-Estimation Interval Target Energy Readout (PHILTER) and Recursive Variational Series Estimation (RVSE), where both are designed to be run on a quantum digital computer and extract materials and molecular properties. The PHILTER algorithm is a modification of the Quantum Phase Estimation and is designed to compute excited state energies within a target energy-interval for cases where good approximations for the states in the target energy-interval are either unknown or hard to prepare. For the RVSE algorithm, we pose the question: how might we use imperfect near-term quantum computers to solve problems of practical value? In this work, we introduce a method to compute expectation values of general functions of a Hamiltonian with respect to an input state using low depth quantum circuits suitable for noisy intermediate-scale quantum computers. For the hardware part, we propose a new chemical quantum computer by using molecular electronics as a basis for quantum computing. In this work, we pose the question: can scattering of electrons in molecules produce quantum gates? We construct one-qubit gates using one-electron scattering in molecules, and two-qubit controlled-phase gates using electron-electron scattering along metallic leads. We show initial applications of the framework by illustrating one-qubit gates using the molecular electronic structure of molecular hydrogen as a baseline model.
One of the first practical applications of quantum computers is expected to be molecular modelling. Performing this task would profoundly affect areas such as chemistry, materials science and drug synthesis. Modelling of molecules, which are classically intractable, can be achieved with just over 303030 qubits, whereas state of the art quantum computers already have more than 505050 qubits. The Variational Quantum Eigensolver (VQE) algorithm and VQE based protocols, are promising candidates to enable this task on emerging Noisy Intermediate-Scale Quantum (NISQ) computers. These protocols require short quantum circuits and short coherence times, and are particularly resilient to quantum errors. Nevertheless, there is still a significant gap between the accuracy and the coherence times of current NISQ computers, and the hardware requirements of VQE protocols to simulate practically interesting molecules. In this thesis, I present my contribution to narrowing this gap by developing VQE protocols for molecular modelling that are less demanding on quantum hardware. The VQE relies on the Rayleigh-Ritz variational principle to estimate the eigenvalues of a Hamiltonian operator, by minimizing its expectation value with respect to a trial quantum state, prepared by an ansatz. A major challenge for the practical realisation of VQE protocols on NISQ computers is to construct an ansatz that: (1) can accurately approximate the eigenstates of the Hamiltonian; (2) is easy to optimize; and (3) can be implemented by a shallow circuit, within the capabilities of a NISQ computer. The most widely used, unitary coupled cluster (UCC), type of ans\"atze mathematically correspond to a product of unitary evolutions of fermionic excitation operators. Owing to their fermionic structure, UCC ans\"atze preserve the symmetries of electronic wavefunctions, and thus are accurate and easy to optimize. Nevertheless, UCC ans\"atze are implemented by high depth circuits, which severely limit the size of the molecules that can be reliably simulated on NISQ computers. In this thesis, I begin by constructing efficient quantum circuits to perform evolutions of fermionic excitation operators. The circuits are optimized in the number of two-qubit entangling gates, which are the current bottleneck of NISQ computers. Compared to the standard circuits used to implement evolutions of fermionic excitation operators, the circuits derived in this thesis reduce the number of two-qubit entangling gates by more than 70%70\%70% on average. As an intermediate result, I also derive efficient circuits to perform evolutions of qubit excitation operators (excitation operators that account for qubit, rather than fermionic commutation relations). Even with the fermionic-excitation-evolution circuits derived here, UCC ans\"atze still require very long circuits, with a particularly large number of two-qubit entangling gates. In this thesis, I consider the use of alternative VQE ans\"atze, based on evolutions of qubit excitation operators. Due to not accounting for fermionic anticommutation, evolutions of qubit excitation operators can be performed by circuits that require asymptotically fewer two-qubit entangling gates. Furthermore, qubit excitation operators preserve many of the physical properties of fermionic excitation operators. Performing a number of classical numerical VQE simulations for small molecules, I show that qubit-excitation-based ans\"atze can approximate molecular electronic wavefunctions almost as accurately as fermionic-excitation-based ans\"atze. Hence, I argue that evolutions of qubit excitation operators are more suitable to construct molecular ans\"atze than evolutions of fermionic excitation operators, especially in the era of NISQ computers. Motivated by the advantage of qubit-excitation-based ans\"atze, I introduce the qubit-excitation-based adaptive variational quantum eigensolver (QEB-ADAPT-VQE). The QEB-ADAPT-VQE belongs to a family of ADAPT-VQE protocols for molecular modelling that grow a problem-tailored ansatz by iteratively appending unitary operators sampled from a predefined finite-size pool of operators. The operator at each iteration is sampled based on an ansatz-growing strategy, which aims to achieve the lowest estimate for the Hamiltonian expectation value at each iteration. In this way, ADAPT-VQE protocols construct shallow-circuit, few-parameter ans\"atze tailored specifically to the molecular systems of interest. In the case of the QEB-ADAPT-VQE, the operator pool is defined by a set of evolutions of single and double qubit excitation operators. I benchmark the performance of the QEB-ADAPT-VQE, by performing classical numerical simulations. I demonstrate that it can construct ans\"atze that are several orders of magnitude more accurate, and require significantly shallower circuits, than standard UCC ans\"atze. I also compare the QEB-ADAPT-VQE against the original fermionic-ADAPT-VQE, which utilizes a pool of fermionic excitation evolutions, and the qubit-ADAPT-VQE, which utilizes a pool of Pauli-string evolutions. I demonstrate that, in terms of circuit efficiency and convergence speed, the QEB-ADAPT-VQE systematically outperforms the qubit-ADAPT-VQE, which to my knowledge was the previous most circuit-efficient, scalable VQE protocol for molecular modeling. The QEB-ADAPT-VQE protocol, therefore represents a significant improvement in the field of VQE protocols for molecular modelling and brings us closer to achieving practical quantum advantage. Lastly, I outline a modified version of the QEB-ADAPT-VQE, the excited-QEB-ADAPT-VQE, designed to estimate energies of excited molecular states. The excited-QEB-ADAPT-VQE is more robust to initial simulation conditions, at the expense of increased computational complexity.
Quantum chemistry models atoms and molecules using quantum mechanics, with the electronic structure problem at its core. This problem, which determines the energy and properties of electrons in a molecule, is exponentially hard to solve exactly on classical computers. To approximate solutions, effective models introduce layers of simplifications. However, these approximations can fail for strongly correlated systems, necessitating alternative approaches. Quantum computers, capable of processing quantum information natively, offer a promising path to simulate molecular systems beyond classical reach, with potential applications in catalysis, materials science, and photochemistry. Despite rapid advancements in quantum hardware, practical quantum computations remain challenging due to limited resources. This thesis optimizes quantum resource usage in computational chemistry, introducing novel embedding techniques and exploring applications beyond ground-state energies. Chapter 1 establishes the foundation by reviewing quantum chemistry methods, from Hartree-Fock and Density Functional Theory (DFT) to active space approaches. It also provides an introduction to quantum computing for chemistry, focusing on near-term algorithms. The following chapters present novel methods aimed at reducing quantum resource requirements and tackling problems classical methods struggle with. Chapter 2 introduces a technique to reduce the λ\lambdaλ-norm of the electronic structure Hamiltonian, a key measure of quantum resource demand. By transforming molecular orbitals, this method enhances sampling efficiency in Noisy Intermediate-Scale Quantum (NISQ) algorithms and reduces runtime in Fault-Tolerant Quantum Computing (FTQC). Localized orbitals outperform canonical ones, and an orbital-optimization scheme is proposed to minimize the λ\lambdaλ-norm. Benchmarks on hydrogen chains, FeMoco, and Ruthenium complexes demonstrate its effectiveness. Chapter 3 presents the FragPT2 framework for simulating large systems with multiple interacting fragments. This method embeds each fragment in the mean field of others and applies multi-reference perturbation theory to capture inter-fragment correlations such as dispersion and charge transfer efficiently. The approach reduces computational overhead and enables scalable simulations, as shown in applications to \ce{N2} dimers, aromatic dimers, and butadiene. Chapter 4 focuses on photochemical systems, where multiple electronic states must be treated equally. The state-averaged orbital-optimized variational quantum eigensolver (SAOOVQE) is extended with analytical energy gradients and non-adiabatic couplings, enabling geometry optimizations and simulations of non-adiabatic dynamics on quantum hardware. This is demonstrated by locating the conical intersection in formaldimine, highlighting SAOOVQE’s potential for studying photoisomerization in biomolecules. Building on this, Chapter 5 develops a quantum algorithm to detect conical intersections, where the Born-Oppenheimer approximation breaks down. These intersections are characterized by a discrete Berry phase (0 or π\piπ), representing their topological nature. The algorithm extracts this phase as a single bit of information, ensuring resilience to noise. Analytical proof and numerical validation using a toy molecular model illustrate its effectiveness for studying light-perception biochemistry and related photochemical processes. Finally, Chapter 6 explores machine learning density functionals trained on noisy quantum data. While DFT is computationally efficient, its accuracy depends on approximated exchange-correlation functionals. This work proposes a neural network-based approach to learn the exact functional from quantum data, showing that training on noisy outputs from NISQ devices can mitigate sampling errors. Applications to the Fermi-Hubbard model and other systems demonstrate its potential to generalize and provide accurate results under noise. This thesis advances quantum computational chemistry by optimizing quantum resource usage, developing new embedding strategies, and expanding the scope of quantum simulations beyond ground-state properties. These contributions pave the way for practical quantum algorithms that could revolutionize molecular simulations in the near future.
Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.
Determining the properties of molecules and materials is one of the premier applications of quantum computing. A major question in the field is: how might we use imperfect near-term quantum computers to solve problems of practical value? We propose a quantum algorithm to estimate the properties of molecules using near-term quantum devices. The method is a recursive variational series estimation method, where we expand an operator of interest in terms of Chebyshev polynomials and evaluate each term in the expansion using a variational quantum algorithm. We test our method by computing the one-particle Green's function in the energy domain and the autocorrelation function in the time domain.
Quantum chemistry is among the most promising applications of quantum computing, offering the potential to solve complex electronic structure problems more efficiently than classical approaches. A critical component of any quantum algorithm is the measurement step, where the desired properties are extracted from a quantum computer. This review focuses on recent advancements in quantum measurement techniques tailored for quantum chemistry, particularly within the second quantized framework suitable for current and near-term quantum hardware. We provide a comprehensive overview of measurement strategies developed primarily for the Variational Quantum Eigensolver (VQE) and its derivatives. These strategies address the inherent challenges posed by complexity of the electronic Hamiltonian operator. Additionally, we examine methods for estimating excited states and one- and two-electron properties, extending the applicability of quantum algorithms to broader chemical phenomena. Key aspects of the review include approaches for constructing measurement operators with reduced classical preprocessing and quantum implementation costs, techniques to minimize the number of measurements required for a given accuracy, and error mitigation strategies that leverage symmetries and other properties of the measurement operators. Furthermore, we explore measurement schemes rooted in Quantum Phase Estimation (QPE), which are expected to become viable with the advent of fault-tolerant quantum computing. This review emphasizes foundational concepts and methodologies rather than numerical benchmarks, serving as a resource for researchers aiming to enhance the efficiency and accuracy of quantum measurements in quantum chemistry.