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Quantum-based spectroscopy and efficient energy transport with biomolecules

León Montiel, Roberto de Jesús

Published Sep 30, 2014• 0 citations
OpenAlex

Abstract

For many years, the fields of quantum optics and biology have rarely shared a common path. In quantum optics, most of the concepts and techniques developed over the years stand for systems where only a few degrees of freedom are considered and, more importantly, where the systems under study are assumed to be completely isolated from their surrounding environment. This situation is far from what we can find in nature. Biological complexes are, by definition, warm, wet and noisy systems subjected to environmental fluctuations, where quantum phenomena are unlikely to be observed. Notwithstanding, in recent years, this paradigm has begun to be questioned by several works where quantum-mechanical concepts have been introduced in order to describe the dynamics of important biological processes, such as energy transport in photosynthetic light-harvesting complexes. The goal of this thesis is twofold. Firstly, we will investigate how ideas and techniques routinely used in quantum optics can be exploited in order to develop new quantum-based spectroscopy techniques and, secondly, we will examine to what extent microscopic quantum phenomena could impact on the efficient transport behavior of photosynthetic light-havesting complexes. This problem is particularly relevant, because the understanding of the fundamental mechanisms that enable the highly efficient transport of energy in photosynthetic systems could lead us to the design of future quantum-inspired light-harvesting technologies, such as high-efficiency organic solar cells.

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For many years, the fields of quantum optics and biology have rarely shared a common path. In quantum optics, most of the concepts and techniques developed over the years stand for systems where only a few degrees of freedom are considered and, more importantly, where the systems under study are assumed to be completely isolated from their surrounding environment. This situation is far from what we can find in nature. Biological complexes are, by definition, warm, wet and noisy systems subjected to environmental fluctuations, where quantum phenomena are unlikely to be observed. Notwithstanding, in recent years, this paradigm has begun to be questioned by several works where quantum-mechanical concepts have been introduced in order to describe the dynamics of important biological processes, such as energy transport in photosynthetic light-harvesting complexes. The goal of this thesis is twofold. Firstly, we will investigate how ideas and techniques routinely used in quantum optics can be exploited in order to develop new quantum-based spectroscopy techniques and, secondly, we will examine to what extent microscopic quantum phenomena could impact on the efficient transport behavior of photosynthetic light-havesting complexes. This problem is particularly relevant, because the understanding of the fundamental mechanisms that enable the highly efficient transport of energy in photosynthetic systems could lead us to the design of future quantum-inspired light-harvesting technologies, such as high-efficiency organic solar cells.
The study of quantum phenomena in biology has received significant attention in the last decade. One of the problems of most interest is the understanding of quantum effects during the first steps of photosynthesis. Ultrafast two-dimensional electronic spectroscopy has revealed that pigment-protein complexes responsible for light- harvesting and charge separation in photosynthetic organisms can support quantum coherent dynamics in the excited state, for up to few hundreds of femtoseconds. The leading hypothesis on the mechanisms supporting this coherent behaviour is quan- tum interactions between electronic and some specific vibrational motions in the excited state. This hypothesis, however, awaits unambiguous confirmation. Among the most powerful techniques to investigate the quantum behaviour of an emitter is the study of quantum optical properties of the light it emits. This thesis de- velops theoretical studies showing that frequency-filtered and time-resolved photon counting statistics of the light emitted by a prototype photosynthetic unit can give important insight into the quantum coherent nature and the mechanisms underlying excited state dynamics in single photosynthetic complexes. By developing a pertur- bative and efficient approach to the computation of frequency- and time- resolved photon correlation functions, we show that such correlations have the potential to give unambiguous signatures of coherence contributions to the steady state emis- sion. For a light-harvesting unit emitting in free space, the signatures of excited state coherence manifest themselves as non-trivial antibunching. This feature can- not be probed by measuring unfiltered photon correlations. We then consider the situation in which a prototype energy transfer unit is embedded in an optical cavity such that its emission rate is enhanced. In this case we observed a rich behaviour of the frequency-filtered, second-order photon correlations that allows a clear distinc- tion of coherence contributions, and their variation, depending of the electronic and vibrational interactions in the system of interest.
Ultrafast spectroscopy experiments show that photosynthetic systems can preserve quantum beats in the process of electronic energy transfer between pigments, even at room temperature. But what does this discovery imply for biology - and for quantum mechanics? This dissertation examines photosynthesis through the tools of quantum information science. We evaluate to what extent photosynthesis can be thought of as a type of quantum technology, and consider how we can apply experimental tools widely used for quantum technologies (state tomography and coherent control) to photosynthesis. Throughout, we use the Fenna-Matthews-Olson (FMO) complex of greens sulfur bacteria as a model photosynthetic pigment-protein complex.In Part I, we evaluate two mechanisms for the possible biological relevance of quantum coherent motion. First, we consider the extent to which dynamics in light-harvesting systems exhibit the quantum speedups characteristic of quantum algorithms and quantum walks. Second, we demonstrate a ratchet effect in electronic energy transfer enabled by partially coherent dynamics. To do so, we build a new model of energy transfer between weakly coupled light-harvesting complexes to understand how electronic coherence arises under natural conditions.In Part II, we present proposals for experimental probes of light harvesting dynamics with ultrafast spectroscopy. We show how the signal from pump-probe spectroscopy can be formally inverted to determine the excited state electronic density matrix. Finally, we examine the feasiblity of coherent control experiments on light-harvesting systems, and provide two realistic targets feasible with present-day technology.
Networks of interacting molecular optical dipoles play an important role in photosynthetic light harvesting, and also hold significant promise for future artificial technologies. This manuscript gives a brief overview of questions addressed by (our) recent theoretical work with a focus on taking inspiration from biological structures and processes to come up with designs for utilising bio-inspired collective quantum optical effects. These could, for instance, enable quantum-enhanced light harvesting, the charging of Dicke quantum batteries through superabsorption of light, and achieving efficient long-range energy transport. Particular attention is given to the role of inter-emitter quantum coherence as an enabler of these effects.
Abstract Nontrivial quantum effects in biological systems are of high interest among physicists over the past decade. They allow for information and energy to be exchanged with near-unity efficiency despite hindered by the warm, wet, and noisy environment. Several models suggests that the efficient quantum energy transport is due to the interplay between dephasing dynamics and unitary evolution of the disordered biological systems i.e in photosynthetic complex. However, the proposed models have not yet included the driving force depicting the external perturbation used in the experiment such as laser in 2D spectroscopy involved in the detection of the exciton transfer or an artificial quantum transport experiments. Here, we resolve this issue by subjecting the dephasing assisted transport model by Plenio and Huelga [New J. Phys. 10, 11 (2012)] to a driving force. We analyze dynamical evolution of the driven system and show that further efficiency enhancement achieved by driving the transport site. We also discuss some experimental realizations of the quantum transport system.
We review recent theoretical calculations of quantum entanglement in photosynthetic light harvesting complexes. These works establish, for the first time, a manifestation of this characteristically quantum mechanical phenomenon in biologically functional structures. We begin by summarizing calculations on model biomolecular systems that aim to reveal non-trivial characteristics of quantum entanglement in non-equilibrium biological environments. We then discuss and compare several calculations performed recently of excitonic dynamics in the Fenna-Matthews-Olson light harvesting complex and of the electronic entanglement present in this widely studied pigment-protein structure. We point out the commonalities between the derived results and also identify and explain the differences. We also discuss recent work that examines entanglement in the structurally more intricate light harvesting complex II (LHCII). During this overview, we take the opportunity to clarify several subtle issues relating to entanglement in such biomolecular systems, including the role of entanglement in biological function, the complexity of dynamical modeling that is required to capture the salient features of entanglement in such biomolecular systems, and the relationship between entanglement and other quantum mechanical features that are observed and predicted in light harvesting complexes. Finally, we suggest possible extensions of the current work and also review the options for experimental confirmation of the predicted entanglement phenomena in light harvesting complexes.
It has been suggested that excitation transport in photosynthetic light-harvesting complexes features speedups analogous to those found in quantum algorithms. Here we compare the dynamics in these light-harvesting systems to the dynamics of quantum walks, in order to elucidate the limits of such quantum speedups. For the Fenna–Matthews–Olson complex of green sulfur bacteria, we show that while there is indeed speedup at short times, this is short lived (70 fs) despite longer-lived (ps) quantum coherence. Remarkably, this timescale is independent of the details of the decoherence model. More generally, we show that the distinguishing features of light-harvesting complexes not only limit the extent of quantum speedup but also reduce the rates of diffusive transport. These results suggest that quantum coherent effects in biological systems are optimized for efficiency or robustness rather than the more elusive goal of quantum speedup.