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Non-cyclic Geometric Phase In Stochastic Processes: Corrections To Michaelis-menten Kinetics And Applications To A Cell Growth Model

Nikolai A. Sinitsyn

Published Jan 1, 2008• 0 citations
OpenAlex

Abstract

We generalize the concept of the geometric phase in stochastic kinetics to a noncyclic evolution. Its application is demonstrated on kinetics of the Michaelis-Menten reaction. It is shown that the noncyclic geometric phase is responsible for the correction to the Michaelis-Menten law when parameters, such as a substrate concentration, are changing with time. We also discuss a model, where this correction qualitatively changes the outcome of reaction kinetics.

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We generalize the concept of the geometric phase in stochastic kinetics to a noncyclic evolution. Its application is demonstrated on kinetics of the Michaelis-Menten reaction. It is shown that the noncyclic geometric phase is responsible for the correction to the Michaelis-Menten law when parameters, such as a substrate concentration, are changing with time. We also discuss a model, where this correction qualitatively changes the outcome of reaction kinetics.
We propose a general framework of the geometric-phase interpretation for counting statistics. Counting statistics is a scheme to count the number of specific transitions in a stochastic process. The cumulant generating function for the counting statistics can be interpreted as a `phase', and it is generally divided into two parts: the dynamical phase and a remaining one. It has already been shown that for cyclic evolution the remaining phase corresponds to a geometric phase, such as the Berry phase or Aharonov-Anandan phase. We here show that the remaining phase also has an interpretation as a geometric phase even in noncyclic and nonadiabatic evolution.
We propose an application of fiber bundles to counting statistics. The framework of the fiber bundles gives a splitting of a cumulant generating function for a current in a stochastic process, i.e., contributions from the dynamical phase and the geometric phase. We will show that the introduced noncyclic geometric phase is related to kinds of excess contributions, which have been investigated a lot in nonequilibrium physics. Using a specific nonequilibrium model, the characteristics of the noncyclic geometric phase are discussed; in particular, we reveal differences between a geometric contribution for the entropy production and the 'excess entropy production' which has been used to discuss the second law of steady-state thermodynamics.
The theory of quantal revivals is extended to Hamiltonians that are time dependent through the slow noncyclic change of some parameters. It is shown by generalizing the cyclic geometric phase (Berry's phase) to noncyclic Hamiltonians that there is a noncyclic geometric displacement for all quantum revivals. The treatment of the classical mechanical geometric angle is also extended to open paths in parameter space and its semiclassical relation with the noncyclic geometric phase derived. The displacement of the revivals is then shown to be given by the total angle shift on the final torus sum of the dynamical angle and the noncyclic geometric angle.
Recently we showed that quantum cyclic evolution occurs, provided the initial wave function was one of the eigenfunctions of the evolution operator, whatever the concrete form of the Hamiltonian [Phys. Rev. A 50, 5317 (1994)]. This paper will show that, for some specific Hamiltonians, cyclic evolution may occur, even if the initial wave function is not one of the eigenfunctions of the evolution operator. The general conditions for the occurrence of cyclic evolution is derived. Several interesting examples of quantum evolution, also including noncyclic evolution, and some specific geometric phases are given. \textcopyright{} 1996 The American Physical Society.
We use the theory of dynamical invariants to yield a simple derivation of noncyclic analogues of the Abelian and non-Abelian geometric phases. This derivation relies only on the principle of gauge invariance and elucidates the existing definitions of the Abelian noncyclic geometric phase. We also discuss the adiabatic limit of the noncyclic geometric phase and compute the adiabatic non-Abelian noncyclic geometric phase for a spin-1 magnetic (or electric) quadrupole interacting with a precessing magnetic (electric) field.