Future fault-tolerant quantum computers will allow us to calculate electronic structures of atomistic systems. However, these systems will be intrinsically limited in size, requiring embedding theories for many systems because of the unfavorable scaling of the number of terms describing the electron-electron interaction in the second-quantized electronic Hamiltonian. Quantum embedding theories address this challenge by partitioning a quantum system into a region of interest, the impurity, and its (larger) complement, the environment. However, currently available quantum embedding methods place restrictive demands on near-future quantum computers, such as the need to measure reduced density matrices or the need for repeated evaluations. Here, we introduce the new orbital embedding method eCAS that steers clear of these pitfalls by constructing a multi-CAS problem, the active spaces of which are localized and can be solved independently of each other with any quantum algorithm. This also allows for the development of comparatively simple gradient expressions. eCAS leverages the Schmidt decomposition to construct initial impurity and bath orbitals and augments them with localized environment orbitals, based on a mutual correlation criterion. The mutual correlation criterion makes eCAS systematically improvable without the need for any iteratively determined quantities.
In the near future, material and drug design may be aided by quantum computer assisted simulations. These have the potential to target chemical systems intractable by the most powerful classical computers. However, the resources offered by contemporary quantum computers are still limited, restricting the simulations to very simple molecules. In order to rapidly scale up to more interesting molecular systems, we propose the embedding of the quantum electronic structure calculation into a classically computed environment obtained at the Hartree-Fock (HF) or density functional theory (DFT) level of theory. This result is achieved by constructing an effective Hamiltonian that incorporates a mean field potential describing the action of the inactive electrons on a selected Active Space (AS). The ground state of the AS Hamiltonian is then determined by means of the variational quantum eigensolver algorithm. We show that with the proposed HF and DFT embedding schemes, we can obtain significant energy corrections to the reference HF and DFT calculations for a number of simple molecules in their strongly correlated limit (the dissociation regime) as well as for systems of the size of the oxirane molecule.
Quantum chemistry models atoms and molecules using quantum mechanics, with the electronic structure problem at its core. This problem, which determines the energy and properties of electrons in a molecule, is exponentially hard to solve exactly on classical computers. To approximate solutions, effective models introduce layers of simplifications. However, these approximations can fail for strongly correlated systems, necessitating alternative approaches. Quantum computers, capable of processing quantum information natively, offer a promising path to simulate molecular systems beyond classical reach, with potential applications in catalysis, materials science, and photochemistry. Despite rapid advancements in quantum hardware, practical quantum computations remain challenging due to limited resources. This thesis optimizes quantum resource usage in computational chemistry, introducing novel embedding techniques and exploring applications beyond ground-state energies. Chapter 1 establishes the foundation by reviewing quantum chemistry methods, from Hartree-Fock and Density Functional Theory (DFT) to active space approaches. It also provides an introduction to quantum computing for chemistry, focusing on near-term algorithms. The following chapters present novel methods aimed at reducing quantum resource requirements and tackling problems classical methods struggle with. Chapter 2 introduces a technique to reduce the
λ-norm of the electronic structure Hamiltonian, a key measure of quantum resource demand. By transforming molecular orbitals, this method enhances sampling efficiency in Noisy Intermediate-Scale Quantum (NISQ) algorithms and reduces runtime in Fault-Tolerant Quantum Computing (FTQC). Localized orbitals outperform canonical ones, and an orbital-optimization scheme is proposed to minimize the
λ-norm. Benchmarks on hydrogen chains, FeMoco, and Ruthenium complexes demonstrate its effectiveness. Chapter 3 presents the FragPT2 framework for simulating large systems with multiple interacting fragments. This method embeds each fragment in the mean field of others and applies multi-reference perturbation theory to capture inter-fragment correlations such as dispersion and charge transfer efficiently. The approach reduces computational overhead and enables scalable simulations, as shown in applications to \ce{N2} dimers, aromatic dimers, and butadiene. Chapter 4 focuses on photochemical systems, where multiple electronic states must be treated equally. The state-averaged orbital-optimized variational quantum eigensolver (SAOOVQE) is extended with analytical energy gradients and non-adiabatic couplings, enabling geometry optimizations and simulations of non-adiabatic dynamics on quantum hardware. This is demonstrated by locating the conical intersection in formaldimine, highlighting SAOOVQE’s potential for studying photoisomerization in biomolecules. Building on this, Chapter 5 develops a quantum algorithm to detect conical intersections, where the Born-Oppenheimer approximation breaks down. These intersections are characterized by a discrete Berry phase (0 or
π), representing their topological nature. The algorithm extracts this phase as a single bit of information, ensuring resilience to noise. Analytical proof and numerical validation using a toy molecular model illustrate its effectiveness for studying light-perception biochemistry and related photochemical processes. Finally, Chapter 6 explores machine learning density functionals trained on noisy quantum data. While DFT is computationally efficient, its accuracy depends on approximated exchange-correlation functionals. This work proposes a neural network-based approach to learn the exact functional from quantum data, showing that training on noisy outputs from NISQ devices can mitigate sampling errors. Applications to the Fermi-Hubbard model and other systems demonstrate its potential to generalize and provide accurate results under noise. This thesis advances quantum computational chemistry by optimizing quantum resource usage, developing new embedding strategies, and expanding the scope of quantum simulations beyond ground-state properties. These contributions pave the way for practical quantum algorithms that could revolutionize molecular simulations in the near future.
The Schmidt decomposition of quantum many-body states, which is the basis of many powerful quantum many-body techniques, relies on a partition of the whole system in terms of orthogonal local basis functions. By carefully investigating the spectrum of the truncated density matrices in a non-orthogonal basis, we propose in this work a non-orthogonal decomposition of Slater determinants, which reduces to the conventional Schmidt decomposition in the orthogonal limit. The new decomposition provides a natural tool for building local correlation spaces when the orbitals are overlapping, and we are able to extend some existing embedding methods based on the Schmidt decomposition like density matrix embedding theory (DMET) to overlapping subsystem partitions to achieve greater flexibility and efficiency. We also propose a new quantum embedding strategy as another utility of the non-orthogonal decomposition that bridges the \textit{ab initio} model potential (AIMP) theory and DMET, which does not require a mean-field calculation of the whole system like AIMP, and is able to capture quantum entanglement like DMET.
Fragment embedding is one way to circumvent the high computational scaling of accurate electron correlation methods. The challenge of applying fragment embedding to molecular systems primarily lies in the strong entanglement and correlation that prevent accurate fragmentation across chemical bonds. Recently, Schmidt decomposition has been shown effective for embedding fragments that are strongly coupled to a bath in several model systems. In this work, we extend a recently developed quantum embedding scheme, bootstrap embedding (BE), to molecular systems. The resulting method utilizes the matching conditions naturally arising from using overlapping fragments to optimize the embedding. Numerical simulation suggests that the accuracy of the embedding improves rapidly with fragment size for small molecules, whereas larger fragments that include orbitals from different atoms may be needed for larger molecules. BE scales linearly with system size (apart from an integral transform) and hence can potentially be useful for large-scale calculations.
Strongly correlated electronic systems underpin a wide range of emerging quantum technologies, including solid-state defects for quantum information processing, molecular magnets, spin qubits, and quantum sensing platforms. Predictive computational design of these materials requires electronic structure methods capable of simultaneously describing strong electron correlation, excited-state phenomena, spin-dependent interactions, and environmental effects. While multireference wave function methods provide the necessary accuracy, their computational cost severely limits their application to realistic molecular and condensed-phase systems. This dissertation addresses this challenge through the development and application of quantum embedding and fragmentation methodologies that extend multireference electronic structure theory to increasingly complex quantum materials. The first part of this dissertation develops embedding-based approaches for describing optical properties of strongly correlated defects in extended solids. Complete Active Space Density Matrix Embedding Theory (CAS-DMET) and NEVPT2-DMET are applied to oxygen vacancy defects in magnesium oxide, where a systematic double-extrapolation protocol is introduced to approach both the non-embedding and thermodynamic limits. This framework enables quantitatively reliable calculations of absorption and emission energies while significantly reducing the computational cost of conventional multireference treatments of periodic systems. The second part extends embedding methodologies to the description of spin-dependent electronic structure. Density Matrix Embedding Pair-Density Functional Theory (DME-PDFT) is developed to recover dynamic electron correlation beyond the embedded active space, providing an efficient route for studying transition metal complexes and other strongly correlated molecular systems. Building upon these developments, CAS-DMET is further extended to investigate spin-phonon relaxation in molecular magnets and molecular crystals, demonstrating that quantum embedding can accurately describe spin dynamics and decoherence processes while substantially reducing computational cost. Beyond classical electronic structure calculations, this dissertation explores fragmentation strategies for hybrid quantum-classical algorithms through the development of efficient methodologies within the Localized Active Space Unitary Selective Coupled Cluster (LAS-USCC) framework. These developments improve the scalability of quantum chemistry algorithms for large active spaces and establish connections between embedding concepts and emerging quantum computing approaches. Finally, electronic structure calculations based on time-dependent density functional theory are employed to investigate fluorescent protein chromophores as potential biocompatible quantum sensors. These studies demonstrate how first-principles calculations can provide insight into spin-dependent properties in biologically relevant systems and expand the scope of computational approaches for quantum materials beyond traditional inorganic and molecular platforms. Collectively, the work presented in this dissertation establishes embedding and fragmentation as versatile frameworks for accurately describing the optical and spin properties of strongly correlated quantum systems across multiple length scales. By combining multireference electronic structure methods with physically motivated subsystem decompositions,these approaches bridge the gap between chemical accuracy and computational scalability, providing practical computational tools for the study and design of quantum materials relevant to quantum information science, molecular spintronics, and quantum sensing.
Quantum embedding theories are promising approaches to investigate strongly correlated electronic states of active regions of large-scale molecular or condensed systems. Notable examples are spin defects in semiconductors and insulators. We present a detailed derivation of a quantum embedding theory recently introduced, which is based on the definition of effective Hamiltonians. The effect of the environment on a chosen active space is accounted for through screened Coulomb interactions evaluated using density functional theory. Importantly, the random phase approximation is not required, and the evaluation of virtual electronic orbitals is circumvented with algorithms previously developed in the context of calculations based on many-body perturbation theory. In addition, we generalize the quantum embedding theory to active spaces composed of orbitals that are not eigenstates of Kohn-Sham Hamiltonians. Finally, we report results for spin defects in semiconductors.