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arXiv:2609.39302

SQD-Agent: LLM-driven agentic framework for Quantum Chemistry workflows

Kislaya Tiwari, Anupama Ray

quant-phcs.MASubmitted Sep 30, 2026• Announced Oct 1, 2026• 0 citations
v1 · Sep 30, 2026v2 · Oct 14, 2026
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Abstract

Quantum algorithms and quantum hardware are advancing towards a promising paradigm for scientific applications. However, translating domain-specific problems into executable hybrid quantum-classical workflows remains a significant barrier for application researchers due to the required expertise in quantum algorithms, nuances in quantum programming, and hardware-aware system integration. At the same time, AI and primarily LLM based agents are increasingly capable of interpreting natural-language intent, reasoning over complex workflows, and translating high-level objectives into executable code and building computational pipelines. In this work, we introduce SQD Agent, an LLM-based agentic framework that translates natural-language user intent into executable workflows for Quantum Chemistry applications where algorithms from the Sample-Based Quantum Diagonalization (SQD) family are used. By automating this translation, SQD Agent reduces the level of human expertise and configuration overhead required, thereby simplifying experimentation in hybrid quantum-classical settings for application researchers new to quantum. SQD Agent adopts a modular and extensible architecture that supports seamless integration of heterogeneous quantum backends, classical solvers, and workflow components, ensuring adaptability to rapidly evolving quantum ecosystems. The framework further incorporates interactive capabilities for on-demand profiling, bottleneck analysis, resource optimization, intelligent result caching, and convergence visualization. Key features include quantum chemistry experiments, error mitigation on real quantum hardware, together with analysis of candidate mitigation schemes in terms of their potential error-recovery behavior and computational budget, helping users understand their practical trade-offs and decide which strategies to explore in subsequent experiments.

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Accepted in IEEE International Conference on High Performance Computing (HiPC 2026)

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Quantum algorithms and quantum hardware are advancing towards a promising paradigm for scientific applications. However, translating domain-specific problems into executable hybrid quantum-classical workflows remains a significant barrier for application researchers due to the required expertise in quantum algorithms, nuances in quantum programming, and hardware-aware system integration. At the same time, AI and primarily LLM based agents are increasingly capable of interpreting natural-language intent, reasoning over complex workflows, and translating high-level objectives into executable code and building computational pipelines. In this work, we introduce SQD Agent, an LLM-based agentic framework that translates natural-language user intent into executable workflows for Quantum Chemistry applications where algorithms from the Sample-Based Quantum Diagonalization (SQD) family are used. By automating this translation, SQD Agent reduces the level of human expertise and configuration overhead required, thereby simplifying experimentation in hybrid quantum-classical settings for application researchers new to quantum. SQD Agent adopts a modular and extensible architecture that supports seamless integration of heterogeneous quantum backends, classical solvers, and workflow components, ensuring adaptability to rapidly evolving quantum ecosystems. The framework further incorporates interactive capabilities for on-demand profiling, bottleneck analysis, resource optimization, intelligent result caching, and convergence visualization. Key features include quantum chemistry experiments, error mitigation on real quantum hardware, together with analysis of candidate mitigation schemes in terms of their potential error-recovery behavior and computational budget, helping users understand their practical trade-offs and decide which strategies to explore in subsequent experiments.
Quantum hardware advances now make it practical to explore quantum approaches to scientific problems. Applied quantum computing research sits at the intersection of domain knowledge, algorithms, theoretical physics, device physics, and quantum and classical computational methods. The breadth of expertise required and the inherent project complexity challenge not only any individual researcher, but also generic AI systems. Here, we introduce the Quantum Agentic Operating System (QAOS), a structured agentic research system designed to address this challenge for quantum and computational R&D projects. QAOS is built around a nonlinear workflow graph of heterogeneous multi-agent nodes, with a controlled flow of context and computational resources. It decomposes a complex research project into sandboxed multi-agent tasks executed under constraints from the project graph, task-relevant methodologies, and necessary verification steps. We demonstrate QAOS on a quantum chemistry prototyping task, in which it is asked to set up a minimal model for a proton-transfer problem and to implement its solution using sample-based quantum diagonalization (SQD), together with classical reference methods such as FCI (exact diagonalization) and density functional theory (DFT). We compare the QAOS solution to those obtained with baseline agents (Claude Sonnet 5 with the Claude Code harness). In contrast to QAOS, the baseline agents silently ignore explicit instructions, and the runs show large variability.
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Quantum simulation is central to understanding and designing quantum systems across physics and chemistry. However, its practical use is often limited by the exponential growth of Hilbert space and by the increasing complexity of modern quantum-simulation software. Here we introduce El Agente Cuántico, a multi-agent AI system that automates quantum-simulation workflows by translating natural-language scientific intent into executed and validated computations across heterogeneous quantum-software frameworks. By reasoning directly over library documentation and APIs, our agentic system dynamically assembles end-to-end simulations spanning-but not limited to-state preparation, closed- and open-system dynamics, tensor-network methods, quantum control, quantum error correction, and quantum resource estimation. The developed system unifies traditionally distinct simulation paradigms behind a single natural-language interface. Beyond reducing technical barriers, this approach opens a path toward scalable, adaptive, and increasingly autonomous quantum simulation, enabling faster exploration of physical models, rapid hypothesis testing, and closer integration between theory, simulation, and emerging quantum hardware.
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The integration of large language models (LLMs) into scientific research is accelerating the realization of autonomous ``AI Scientists.'' While recent advancements have empowered AI to formulate hypotheses and design experiments, a critical gap remains in the execution of these tasks, particularly in the domain of quantum computing (QC). Executing quantum algorithms requires not only generating code but also managing complex computational resources such as QPUs and high-performance computing (HPC) clusters. In this paper, we propose an AI-driven framework specifically designed to bridge this execution gap through the implementation of a Model Context Protocol (MCP) server. Our system enables an LLM agent to process natural language prompts submitted as part of a job, autonomously executing quantum computing workflows by invoking our tools via the MCP. We demonstrate the framework's capability by performing essential quantum algorithmic primitives, including sampling and computation of expectation values. Key technical contributions include the development of an MCP server for quantum execution, a pipeline for interpreting OpenQASM code, an automated workflow with CUDA-Q for the ABCI-Q hybrid platform, and an asynchronous execution pipeline for remote quantum hardware using the Quantinuum emulator via CUDA-Q. This work validates that AI agents can effectively abstract the complexities of hardware interaction through an MCP-based architecture, thereby facilitating the automation of practical quantum research.
AI for science promises to accelerate the discovery process. The advent of large language models (LLMs) and agentic workflows enables the expediting of a growing range of scientific tasks. However, most of the current generation of agentic systems depend on static, hand-curated toolsets that hinder adaptation to new domains and evolving libraries. We present El Agente Forjador, a multi-agent framework in which universal coding agents autonomously forge, validate, and reuse computational tools through a four-stage workflow of tool analysis, tool generation, task execution, and iterative solution evaluation. Evaluated across 24 tasks spanning quantum chemistry and quantum dynamics on five coding agent setups, we compare three operating modes: zero-shot generation of tools per task, reuse of a curriculum-built toolset, and direct problem-solving with the coding agents as the baseline. We find that our tool generation and reuse framework consistently improves accuracy over the baseline. We also show that reusing a toolset built by a stronger coding agent can reduce API cost and substantially raises the solution quality for weaker coding agents. Case studies further demonstrate that tools forged for different domains can be combined to solve hybrid tasks. Taken together, these results show that LLM-based agents can use their scientific knowledge and coding capabilities to autonomously build reusable scientific tools, pointing toward a paradigm in which agent capabilities are defined by the tasks they are designed to solve rather than by explicitly engineered implementations.