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arXiv:2609.19018

Quantum-Classical Effective Fragment Potential Embedding for Condensed-Phase Quantum Chemistry

Federico Zahariev, Vassiliki-Alexandra Glezakou, Mark S. Gordon

quant-phphysics.chem-phSubmitted Jul 21, 2026• Announced Jul 22, 2026• 0 citations
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Abstract

Quantum simulation of chemistry in realistic environments is constrained by the orbital cost of explicit solvent, ions, and other surroundings. We present the quantum-classical effective fragment potential (Q-EFP) method, in which a chemically active region is treated with a quantum algorithm and the environment is represented by the effective fragment potential (EFP) in GAMESS. Coulomb and polarization potentials enter the active-region one-electron Hamiltonian, while EFP-EFP and short-range environment contributions are assembled classically. Statevector UCCSD/STO-3G benchmarks for LiH in a mixed water/methanol environment, H2O in a five-water environment, and BeH2 in an ammonium/nitrate environment differ from matched classical CCSD/EFP calculations by 0.03, 0.38, and 0.01 kcal/mol, respectively. The active calculations require 4 to 8 qubits, compared with estimated full-system counts of approximately 84 to 246 qubits, corresponding to register reductions of about 10-fold to 35-fold. These proof-of-concept results validate the embedded Hamiltonian and Q-GAMESS workflow while separating environmental size from quantum-register size. Q-EFP is complementary to real-space Q-EFMO fragmentation and virtual-orbital Q-FVO reduction, enabling a layered route to larger solvated systems.

Comments
9 pages, 3 figures, 5 tables

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Quantum simulation of chemistry in realistic environments is constrained by the orbital cost of explicit solvent, ions, and other surroundings. We present the quantum-classical effective fragment potential (Q-EFP) method, in which a chemically active region is treated with a quantum algorithm and the environment is represented by the effective fragment potential (EFP) in GAMESS. Coulomb and polarization potentials enter the active-region one-electron Hamiltonian, while EFP-EFP and short-range environment contributions are assembled classically. Statevector UCCSD/STO-3G benchmarks for LiH in a mixed water/methanol environment, H2O in a five-water environment, and BeH2 in an ammonium/nitrate environment differ from matched classical CCSD/EFP calculations by 0.03, 0.38, and 0.01 kcal/mol, respectively. The active calculations require 4 to 8 qubits, compared with estimated full-system counts of approximately 84 to 246 qubits, corresponding to register reductions of about 10-fold to 35-fold. These proof-of-concept results validate the embedded Hamiltonian and Q-GAMESS workflow while separating environmental size from quantum-register size. Q-EFP is complementary to real-space Q-EFMO fragmentation and virtual-orbital Q-FVO reduction, enabling a layered route to larger solvated systems.
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We present a large-scale experimental study of quantum-computing-based molecular simulation carried out on IQM's Sirius 24-qubit superconducting processor, utilizing up to 16 operational qubits. The work employs Sample-based Quantum Diagonalization (SQD) together with the Local Unitary Cluster Jastrow (LUCJ) ansatz to estimate ground-state energies for a set of benchmark molecules, including H2_22​, LiH, BeH2_22​, H2_22​O, and NH3_33​. In addition, we introduce a Linear-CNOT variant of the Unitary Coupled-Cluster Singles and Doubles (LCNot-UCCSD) ansatz within the SQD workflow, trading higher circuit depth for reduced classical preprocessing. A comparison between these ansätze is provided, clarifying their respective strengths, limitations, and suitability for near-term quantum hardware. We further explore potential energy landscapes through 1D scans for H2_22​ and HeH+^++ using both STO-3G and 6-31G basis sets, and for LiH and BeH2_22​ in STO-3G. Extending beyond this, we demonstrate the experimental construction of a full 2D potential energy surface for the water molecule on quantum hardware, mapped over a 32 ×\times× 32 grid in bond length and bond angle. To move beyond small benchmark systems, we combine SQD(LUCJ) with Density Matrix Embedding Theory (DMET) to compute active-space energies for a set of ligand-like molecules, as well as the pharmacologically relevant amantadine system. Across all studies, the majority of quantum-computed energies agree with reference FCI results, as well as with DMET-CASCI energies for embedded systems, to within chemical accuracy for the chosen basis sets. These results demonstrate the reliability of sample-based diagonalization approaches and underscore the potential of hybrid embedding strategies for extending quantum simulations to increasingly complex molecular systems, while also highlighting their practicality on current IQM quantum hardware.
We present a hybrid quantum-classical framework for molecular simulations that combines the variational quantum eigensolver (VQE) with projection-based embedding (PBE) and an implicit solvation treatment. Solvent effects are incorporated through the solvation model based on density (SMD), enabling the investigation of chemically relevant processes in condensed phase environments within a quantum computing workflow. The embedding strategy partitions the molecular system into active and environment subsystems, allowing correlated quantum simulations of the chemically important subsystem while retaining an efficient classical description of the surroundings. As a representative application, we compute the potential energy surface of a bimolecular nucleophilic substitution (SN2) reaction between the chloride ion and chloromethane in multiple solvents, demonstrating that quantum eigensolver methods can be extended beyond gas-phase models to include solvent effects relevant for reaction energetics.
We present a multilevel embedding framework for quantum chemistry calculations on a quantum computer. In our framework, a quantum algorithm treats the strongly correlated active space, while a high-level wave-function method such as coupled cluster theory or multireference perturbation theory recovers the remaining correlation in the surrounding region. A sampling-based quantum algorithm, quantum-selected configuration interaction, bridges the quantum and classical treatments. The entire calculation is embedded in a low-cost density functional theory description of the surrounding environment using Manby's projection technique. We apply the framework to organic, metal-organic, and metallic systems, computing bond dissociation energies, adsorption energies, and reaction barriers using only the subset of qubits of a 144-qubit superconducting quantum computer at the University of Osaka and achieving $\sim$1 kcal/mol agreement with classical references for a Menshutkin SN2\mathrm{S_N2}SN​2 reaction inside a carbon nanotube. Our results may open the way to quantitatively reliable quantum-classical hybrid calculations for large-scale chemical systems.
Quantum computers offer significant potential for complex system analysis, yet their application in large systems is hindered by limitations such as qubit availability and quantum hardware noise. While the variational quantum eigensolver (VQE) was proposed to address these issues, its scalability remains limited. Many efforts, including new ansätze and Hamiltonian modifications, have been made to overcome these challenges. In this work, we introduced the novel Fragment Molecular Orbital/Variational Quantum Eigensolver (FMO/VQE) algorithm. This method combines the fragment molecular orbital (FMO) approach with VQE and efficiently utilizes qubits for quantum chemistry simulations. Employing the UCCSD ansatz, the FMO/VQE achieved an absolute error of just 0.053 mHa with 8 qubits in a [Formula: see text] system using the STO-3G basis set, and an error of 1.376 mHa with 16 qubits in a [Formula: see text] system with the 6-31G basis set. These results indicated a significant advancement in scalability over conventional VQE, maintaining accuracy with fewer qubits. Therefore, our FMO/VQE method exemplifies how integrating fragment-based quantum chemistry with quantum algorithms can enhance scalability, facilitating more complex molecular simulations and aligning with quantum computing advancements.