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arXiv:2606.06015

Quantum computing for accurate large-scale electronic-structure calculations: DFT-embedded, post-processed quantum-selected configuration interaction

Tuan Minh Do, Yuichiro Yoshida, Tomoya Shiota, Wataru Mizukami

physics.chem-phquant-phSubmitted Jun 4, 2026• Announced Jun 5, 2026• 0 citations
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Abstract

We present a multilevel embedding framework for quantum chemistry calculations on a quantum computer. In our framework, a quantum algorithm treats the strongly correlated active space, while a high-level wave-function method such as coupled cluster theory or multireference perturbation theory recovers the remaining correlation in the surrounding region. A sampling-based quantum algorithm, quantum-selected configuration interaction, bridges the quantum and classical treatments. The entire calculation is embedded in a low-cost density functional theory description of the surrounding environment using Manby's projection technique. We apply the framework to organic, metal-organic, and metallic systems, computing bond dissociation energies, adsorption energies, and reaction barriers using only the subset of qubits of a 144-qubit superconducting quantum computer at the University of Osaka and achieving $\sim$1 kcal/mol agreement with classical references for a Menshutkin $\mathrm{S_N2}$ reaction inside a carbon nanotube. Our results may open the way to quantitatively reliable quantum-classical hybrid calculations for large-scale chemical systems.

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Strongly correlated electronic systems underpin a wide range of emerging quantum technologies, including solid-state defects for quantum information processing, molecular magnets, spin qubits, and quantum sensing platforms. Predictive computational design of these materials requires electronic structure methods capable of simultaneously describing strong electron correlation, excited-state phenomena, spin-dependent interactions, and environmental effects. While multireference wave function methods provide the necessary accuracy, their computational cost severely limits their application to realistic molecular and condensed-phase systems. This dissertation addresses this challenge through the development and application of quantum embedding and fragmentation methodologies that extend multireference electronic structure theory to increasingly complex quantum materials. The first part of this dissertation develops embedding-based approaches for describing optical properties of strongly correlated defects in extended solids. Complete Active Space Density Matrix Embedding Theory (CAS-DMET) and NEVPT2-DMET are applied to oxygen vacancy defects in magnesium oxide, where a systematic double-extrapolation protocol is introduced to approach both the non-embedding and thermodynamic limits. This framework enables quantitatively reliable calculations of absorption and emission energies while significantly reducing the computational cost of conventional multireference treatments of periodic systems. The second part extends embedding methodologies to the description of spin-dependent electronic structure. Density Matrix Embedding Pair-Density Functional Theory (DME-PDFT) is developed to recover dynamic electron correlation beyond the embedded active space, providing an efficient route for studying transition metal complexes and other strongly correlated molecular systems. Building upon these developments, CAS-DMET is further extended to investigate spin-phonon relaxation in molecular magnets and molecular crystals, demonstrating that quantum embedding can accurately describe spin dynamics and decoherence processes while substantially reducing computational cost. Beyond classical electronic structure calculations, this dissertation explores fragmentation strategies for hybrid quantum-classical algorithms through the development of efficient methodologies within the Localized Active Space Unitary Selective Coupled Cluster (LAS-USCC) framework. These developments improve the scalability of quantum chemistry algorithms for large active spaces and establish connections between embedding concepts and emerging quantum computing approaches. Finally, electronic structure calculations based on time-dependent density functional theory are employed to investigate fluorescent protein chromophores as potential biocompatible quantum sensors. These studies demonstrate how first-principles calculations can provide insight into spin-dependent properties in biologically relevant systems and expand the scope of computational approaches for quantum materials beyond traditional inorganic and molecular platforms. Collectively, the work presented in this dissertation establishes embedding and fragmentation as versatile frameworks for accurately describing the optical and spin properties of strongly correlated quantum systems across multiple length scales. By combining multireference electronic structure methods with physically motivated subsystem decompositions,these approaches bridge the gap between chemical accuracy and computational scalability, providing practical computational tools for the study and design of quantum materials relevant to quantum information science, molecular spintronics, and quantum sensing.

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We present a multilevel embedding framework for quantum chemistry calculations on a quantum computer. In our framework, a quantum algorithm treats the strongly correlated active space, while a high-level wave-function method such as coupled cluster theory or multireference perturbation theory recovers the remaining correlation in the surrounding region. A sampling-based quantum algorithm, quantum-selected configuration interaction, bridges the quantum and classical treatments. The entire calculation is embedded in a low-cost density functional theory description of the surrounding environment using Manby's projection technique. We apply the framework to organic, metal-organic, and metallic systems, computing bond dissociation energies, adsorption energies, and reaction barriers using only the subset of qubits of a 144-qubit superconducting quantum computer at the University of Osaka and achieving ∼\sim∼1 kcal/mol agreement with classical references for a Menshutkin SN2\mathrm{S_N2}SN​2 reaction inside a carbon nanotube. Our results may open the way to quantitatively reliable quantum-classical hybrid calculations for large-scale chemical systems.
Predictive simulations of catalytic interfaces require correlated electronic-structure treatments that describe localized chemical transformations while retaining the influence of the extended metallic environment. We introduce QC-DFET, a quantum-computing density-functional embedding framework that maps surface-reaction active spaces to compact, environment-aware qubit Hamiltonians. A reaction-consistent active-space protocol preserves orbital continuity along reaction coordinates, while quantum-selected configuration interaction based on measurements from the Zuchongzhi superconducting quantum processor and strongly contracted perturbation theory capture static and dynamic correlation. On Cu(111), QC-DFET treats active spaces up to 28 qubits and is validated through a hierarchy of experimentally constrained surface-chemistry challenges. H2 dissociation/desorption tests balanced bond breaking and recombination barriers, CO adsorption tests site selectivity and metal-adsorbate bonding, and formate hydrogenation tests competing hydrogenation branches with different kinetic and thermodynamic signatures. Across these cases, QC-DFET reproduces bidirectional H2 barriers, recovers the observed top-site preference and adsorption strength of CO, and reconciles the experimentally benchmarked H2COO* reverse barrier with the lower forward barrier to HCOOH*. These results establish embedded quantum computing as a practical route to correlated surface-reaction energetics.
In the near future, material and drug design may be aided by quantum computer assisted simulations. These have the potential to target chemical systems intractable by the most powerful classical computers. However, the resources offered by contemporary quantum computers are still limited, restricting the simulations to very simple molecules. In order to rapidly scale up to more interesting molecular systems, we propose the embedding of the quantum electronic structure calculation into a classically computed environment obtained at the Hartree-Fock (HF) or density functional theory (DFT) level of theory. This result is achieved by constructing an effective Hamiltonian that incorporates a mean field potential describing the action of the inactive electrons on a selected Active Space (AS). The ground state of the AS Hamiltonian is then determined by means of the variational quantum eigensolver algorithm. We show that with the proposed HF and DFT embedding schemes, we can obtain significant energy corrections to the reference HF and DFT calculations for a number of simple molecules in their strongly correlated limit (the dissociation regime) as well as for systems of the size of the oxirane molecule.
Scientific simulations demand methods combining scalability with predictive accuracy. Density Functional Theory (DFT) on High-Performance Computing (HPC) enables large-scale electronic-structure simulations but is limited by approximations affecting strongly correlated systems and band-gap predictions. Quantum computing offers a pathway to address this, though current Noisy Intermediate-Scale Quantum (NISQ) hardware remains constrained by qubit resources, noise, and execution cost. This work presents a hybrid DFT-Quantum Embedding (QDFT) framework integrating classical HPC-based DFT with a quantum electronic-structure solver. Large systems are partitioned to isolate a chemically relevant active space, treated via the Variational Quantum Eigensolver (VQE), while the remaining degrees of freedom are described by DFT. The framework incorporates active-space selection, embedded Hamiltonian construction, symmetry preservation, operator mapping, self-consistent density updating, and modular classical-quantum coupling. We focus on noiseless quantum simulation to systematically evaluate accuracy, convergence, active-space dependence, computational cost, and HPC scalability without hardware noise. Detailed profiling identifies computational bottlenecks and highlights limitations of CPU-based quantum simulation. A QPU runtime-estimation methodology is additionally developed to assess execution requirements on actual quantum hardware. Results demonstrate quantum embedding's potential to improve selected electronic-structure properties while retaining classical HPC's scalability. Noisy quantum simulation and QPU execution remain key future directions, providing a pathway toward practical, scalable HPC-quantum hybrid simulations as hardware matures.
We present the quantum-selected configuration interaction-tailored coupled-cluster (QSCI-TCC) method, a hybrid quantum-classical scheme that tailors coupled-cluster (CC) theory with a quantum-selected configuration interaction (QSCI) wave function. QSCI provides a scalable, shot-efficient approach to reconstructing the many-electron state prepared on quantum hardware on a classical computer. The resulting active-space CI coefficients, which are free from additive shot noise, are mapped to fixed cluster amplitudes within the tailored coupled-cluster framework, after which a conventional CC calculation optimizes the remaining amplitudes. This workflow embeds static (strong) correlation from the quantum device and subsequently recovers dynamical (weak) correlation, yielding a balanced description of both. The method is classically simulated and applied to the simultaneous O-H bond dissociation in H2_22​O and the triple-bond dissociation in N2_22​. QSCI-TCC and its perturbative-triples variant, QSCI-TCC(T), provide accurate results even where CCSD or CCSD(T) begin to break down. Shot-count tests for the N2_22​ (6e, 6o) active space demonstrate that, with the (c) correction, chemically sufficient precision (≤1\leq 1≤1 kcal/mol) is achieved with only 1.0×1051.0 \times 10^51.0×105 shots in the strongly correlated regime (r=2.2r=2.2r=2.2 Å) -- an order of magnitude fewer than required by an earlier matchgate-shadows implementation [J. Chem. Theory Comput., 20, 5068 (2024)]. By pairing resource-efficient quantum sampling with the CC theory, QSCI-TCC provides a promising pathway to quantum-chemical calculations of classically intractable systems.
Strongly correlated electronic systems underpin a wide range of emerging quantum technologies, including solid-state defects for quantum information processing, molecular magnets, spin qubits, and quantum sensing platforms. Predictive computational design of these materials requires electronic structure methods capable of simultaneously describing strong electron correlation, excited-state phenomena, spin-dependent interactions, and environmental effects. While multireference wave function methods provide the necessary accuracy, their computational cost severely limits their application to realistic molecular and condensed-phase systems. This dissertation addresses this challenge through the development and application of quantum embedding and fragmentation methodologies that extend multireference electronic structure theory to increasingly complex quantum materials. The first part of this dissertation develops embedding-based approaches for describing optical properties of strongly correlated defects in extended solids. Complete Active Space Density Matrix Embedding Theory (CAS-DMET) and NEVPT2-DMET are applied to oxygen vacancy defects in magnesium oxide, where a systematic double-extrapolation protocol is introduced to approach both the non-embedding and thermodynamic limits. This framework enables quantitatively reliable calculations of absorption and emission energies while significantly reducing the computational cost of conventional multireference treatments of periodic systems. The second part extends embedding methodologies to the description of spin-dependent electronic structure. Density Matrix Embedding Pair-Density Functional Theory (DME-PDFT) is developed to recover dynamic electron correlation beyond the embedded active space, providing an efficient route for studying transition metal complexes and other strongly correlated molecular systems. Building upon these developments, CAS-DMET is further extended to investigate spin-phonon relaxation in molecular magnets and molecular crystals, demonstrating that quantum embedding can accurately describe spin dynamics and decoherence processes while substantially reducing computational cost. Beyond classical electronic structure calculations, this dissertation explores fragmentation strategies for hybrid quantum-classical algorithms through the development of efficient methodologies within the Localized Active Space Unitary Selective Coupled Cluster (LAS-USCC) framework. These developments improve the scalability of quantum chemistry algorithms for large active spaces and establish connections between embedding concepts and emerging quantum computing approaches. Finally, electronic structure calculations based on time-dependent density functional theory are employed to investigate fluorescent protein chromophores as potential biocompatible quantum sensors. These studies demonstrate how first-principles calculations can provide insight into spin-dependent properties in biologically relevant systems and expand the scope of computational approaches for quantum materials beyond traditional inorganic and molecular platforms. Collectively, the work presented in this dissertation establishes embedding and fragmentation as versatile frameworks for accurately describing the optical and spin properties of strongly correlated quantum systems across multiple length scales. By combining multireference electronic structure methods with physically motivated subsystem decompositions,these approaches bridge the gap between chemical accuracy and computational scalability, providing practical computational tools for the study and design of quantum materials relevant to quantum information science, molecular spintronics, and quantum sensing.
Accurately describing strong electron correlation in complex systems remains a prominent challenge in computational chemistry as near-term quantum algorithms treating total correlation often require prohibitively deep circuits. Here we present a hybrid strategy combining the Variational Quantum Eigensolver with Multiconfiguration Pair-Density Functional Theory to efficiently decouple correlation effects. This approach confines static correlation to a compact multireference quantum state while recovering dynamic correlation through a classical on-top density functional using reduced-density information. By enabling self-consistent orbital optimization, the method significantly reduces quantum resource overheads without sacrificing physical rigor. We demonstrate chemical accuracy on standard benchmarks by reproducing C2_22​ equilibrium bond lengths and benzene excitation energies with mean absolute errors of 0.006 Å and 0.048 eV respectively. Most notably, for the strongly correlated Cr2_22​ dimer requiring a large complete active space (48e, 42o), the framework yields a bound potential-energy curve and recovers qualitative dissociation behavior despite realistic hardware noise. These results establish that separating correlation types provides a practical route to reliable predictions on near-term quantum hardware.