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arXiv:2603.19007

End-to-End Simulation of Chemical Dynamics on a Quantum Computer

Elliot C. Eklund, Arkin Tikku, Patrick Sinnott, William J. Huggins, Guang Hao Low, Dominic W. Berry, Ivan Kassal

quant-phSubmitted Mar 19, 2026• Announced Mar 20, 2026• 0 citations
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Abstract

Simulations of chemical dynamics are a powerful means for understanding chemistry. However, classical computers struggle to simulate many chemical processes, especially non-adiabatic ones, where the Born-Oppenheimer approximation breaks down. Quantum computers could simulate quantum-chemical dynamics more efficiently than classical computers, but there is currently no complete quantum algorithm for calculating dynamical observables to within a known error. Here, we develop an efficient, end-to-end quantum algorithm for simulating chemical dynamics that avoids all uncontrolled approximations (including the Born-Oppenheimer approximation) and whose error is bounded subject to mild assumptions. To do so, we treat the nuclei and the electrons on an equal footing and simulate the full molecular wavefunction on a momentum-space grid in first quantization, including all algorithmic steps: initial-state preparation, time evolution using qubitization, and measurement of chemical observables such as reaction yields and rates. Our work gives the first algorithm for quantum simulation of chemistry whose end-to-end complexity achieves sublinear scaling in the size of the grid. We achieve this by developing an exponentially faster method for initial-state-preparation. Photochemistry is a likely early application of our algorithm and we estimate resources required for end-to-end simulations of non-adiabatic dynamics of atmospherically important molecules. Classically intractable photochemical computations could be performed using resources comparable to those required for other chemical applications of quantum computing.

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The theoretical investigation of nonadiabatic processes is hampered by the complexity of the coupled electron-nuclear dynamics beyond the Born-Oppenheimer approximation. Classically, the simulation of such reactions is limited by the unfavorable scaling of the computational resources as a function of the system size. While quantum computing exhibits proven quantum advantage for the simulation of real-time dynamics, the study of quantum algorithms for the description of nonadiabatic phenomena is still unexplored. In this Letter, we propose a quantum algorithm for the simulation of fast nonadiabatic chemical processes together with an initialization scheme for quantum hardware calculations. In particular, we introduce a first-quantization method for the time evolution of a wave packet on two coupled harmonic potential energy surfaces (Marcus model). In our approach, the computational resources scale polynomially in the system dimensions, opening up new avenues for the study of photophysical processes that are classically intractable.

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Efficient Simulation of Pre-Born-Oppenheimer Dynamics on a Quantum Computer

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In this work, we present a quantum algorithm for direct first-principles simulation of electron-nuclear dynamics on a first-quantized real-space grid. Our algorithm achieves best-in-class efficiency for block-encoding the pre-Born-Oppenheimer molecular Hamiltonian by harnessing the linear scaling of swap networks for implementing the quadratic number of particle interactions, while using a novel alternating sign implementation of the Coulomb interaction that exploits highly optimized arithmetic routines. We benchmark our approach for a series of scientifically and industrially relevant chemical reactions. We demonstrate over an order-of-magnitude reduction in costs compared to previous state-of-the-art for the $\rm NH_3+BF_3$ reaction, achieving a Toffoli cost of $8.7\times10^{9}$ per femtosecond using $1362$ logical qubits (system + ancillas). Our results significantly lower the resources required for fault-tolerant simulations of photochemical reactions, while providing a suite of algorithmic primitives that are expected to serve as foundational building blocks for a broader class of quantum algorithms.

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Molecular Quantum Dynamics: A Quantum Computing Perspective

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ConspectusSimulating molecular dynamics (MD) within a comprehensive quantum framework has been a long-standing challenge in computational chemistry. An exponential scaling of computational cost renders solving the time dependent Schrödinger equation (TDSE) of a molecular Hamiltonian, including both electronic and nuclear degrees of freedom (DOFs), as well as their couplings, infeasible for more than a few DOFs. In the Born-Oppenheimer (BO), or adiabatic, picture, electronic and nuclear parts of the wave function are decoupled and treated separately. Within this framework, the nuclear wave function evolves along potential energy surfaces (PESs) computed as solutions to the electronic Schrödinger equation parametrized in the nuclear DOFs. This approximation, together with increasingly elaborate numerical approaches to solve the nuclear time dependent Schrödinger equation (TDSE), enabled the treatment of up to a few dozens of degrees of freedom (DOFs). However, for particular applications, such as photochemistry, the BO approximation breaks down. In this regime of non-adiabatic dynamics, solving the full molecular problem including electron-nuclear couplings becomes essential, further increasing the complexity of the numerical solution. Although valuable methods such as multiconfigurational time-dependent Hartree (MCTDH) have been proposed for the solution of the coupled electron-nuclear dynamics, they remain hampered by an exponential scaling in the number of nuclear DOFs and by the difficulty of finding universal variational forms.In this Account, we present a perspective on novel quantum computational algorithms, aiming to alleviate the exponential scaling inherent to the simulation of many-body quantum dynamics. In particular, we focus on the derivation and application of quantum algorithms for adiabatic and non-adiabatic quantum dynamics, which include efficient approaches for the calculation of the BO potential energy surfaces (PESs). Thereafter, we study the time-evolution of a model system consisting of two coupled PESs in first and second quantization. In a first application, we discuss a recently introduced quantum algorithm for the evolution of a wavepacket in first quantization and exploit the potential quantum advantage of mapping its spatial grid representation to logarithmically many qubits. For the second demonstration, we move to the second quantization framework and review the scaling properties of two alternative time-evolution algorithms, namely, a variational quantum algorithm (VQA) (based on the McLachlan variational principle) and conventional Trotter-type evolution (based on a Lie-Trotter-Suzuki formula). Both methods clearly demonstrate the potential of quantum algorithms and their favorable scaling compared to the available classical approaches. However, a clear demonstration of quantum advantage in the context of molecular quantum dynamics may require the implementation of these algorithms in fault-tolerant quantum computers, while their application in near-term, noisy quantum devices is still unclear and deserves further investigation.

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We present a comprehensive end-to-end framework for simulating the real-time dynamics of chemical systems on a fault-tolerant quantum computer, incorporating both electronic and nuclear quantum degrees of freedom. An all-particle simulation is nominally efficient on a quantum computer, but practically infeasible. Hence, central to our approach is the construction of a first-quantized plane-wave algorithm making use of pseudoions. The latter consolidate chemically inactive electrons and the nucleus into a single effective dynamical ionic entity, extending the well-established concept of pseudopotentials in quantum chemistry to a two-body interaction. We explicitly describe efficient quantum circuits for initial state preparation across all degrees of freedom, as well as for block-encoding the Hamiltonian describing interacting pseudoions and chemically active electrons, by leveraging recent advances in quantum rejection sampling to optimize the implementations. To extract useful chemical information, we first design molecular fingerprints by combining density-functional calculations with machine learning techniques, and subsequently validate them through surrogate classical molecular dynamics simulations. These fingerprints are then coherently encoded on a quantum computer for efficient molecular identification via amplitude estimation. We provide an extensive analysis of the cost of running the algorithm on a fault-tolerant quantum computer for several chemically interesting systems. As an illustration, simulating the interaction between $\mathrm{NH_3}$ and $\mathrm{BF_3}$ (a 40-particle system) requires 808 logical qubits to encode the problem, and approximately $10^{11}$ Toffoli gates per femtosecond of time evolution. Our results establish a foundation for further quantum algorithm development targeting chemical and material dynamics.

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Simulating Chemical Dynamics on Analog Quantum Computers

V. C. Olaya-Agudelo

Accurately simulating molecular dynamics during chemical reactions remains a central challenge in computational chemistry. These processes are inherently quantum mechanical, involving coupled electronic and nuclear motion and non-adiabatic effects. A fully quantum description is therefore required, yet the associated computational cost grows exponentially with system size. Even with modern supercomputers, storing and evolving a molecular wavefunction rapidly becomes intractable, limiting exact simulations of chemical dynamics. Quantum simulation offers a promising alternative by using controllable quantum systems to directly reproduce molecular dynamics. However, fully digital, qubit-based approaches remain impractical for chemistry due to limited qubit numbers, coherence times, and gate fidelities. This motivates the exploration of more resource-efficient quantum architectures. In this thesis, we demonstrate that mixed-qudit-boson (MQB) quantum simulators provide a practical platform for simulating chemical dynamics in the quantum regime. In MQB devices, multilevel qudits encode electronic states while bosonic modes natively represent vibrational degrees of freedom, avoiding costly qubit encodings of nuclear motion and substantially reducing resource requirements. The thesis makes three main contributions. First, it reports the direct observation of geometric-phase interference in non-adiabatic dynamics using an MQB simulation of the Jahn–Teller model. Second, it extends the MQB framework to open-system chemical dynamics through programmable Lindblad dissipation. Third, it presents a resource analysis showing that MQB simulators can reduce resource costs by several orders of magnitude relative to qubit-only approaches. Together, these results establish MQB quantum simulators as a promising route for studying chemical dynamics beyond the reach of classical computation.

•Jan 1, 2026•0 citations
Simulations of chemical dynamics are a powerful means for understanding chemistry. However, classical computers struggle to simulate many chemical processes, especially non-adiabatic ones, where the Born-Oppenheimer approximation breaks down. Quantum computers could simulate quantum-chemical dynamics more efficiently than classical computers, but there is currently no complete quantum algorithm for calculating dynamical observables to within a known error. Here, we develop an efficient, end-to-end quantum algorithm for simulating chemical dynamics that avoids all uncontrolled approximations (including the Born-Oppenheimer approximation) and whose error is bounded subject to mild assumptions. To do so, we treat the nuclei and the electrons on an equal footing and simulate the full molecular wavefunction on a momentum-space grid in first quantization, including all algorithmic steps: initial-state preparation, time evolution using qubitization, and measurement of chemical observables such as reaction yields and rates. Our work gives the first algorithm for quantum simulation of chemistry whose end-to-end complexity achieves sublinear scaling in the size of the grid. We achieve this by developing an exponentially faster method for initial-state-preparation. Photochemistry is a likely early application of our algorithm and we estimate resources required for end-to-end simulations of non-adiabatic dynamics of atmospherically important molecules. Classically intractable photochemical computations could be performed using resources comparable to those required for other chemical applications of quantum computing.
The theoretical investigation of nonadiabatic processes is hampered by the complexity of the coupled electron-nuclear dynamics beyond the Born-Oppenheimer approximation. Classically, the simulation of such reactions is limited by the unfavorable scaling of the computational resources as a function of the system size. While quantum computing exhibits proven quantum advantage for the simulation of real-time dynamics, the study of quantum algorithms for the description of nonadiabatic phenomena is still unexplored. In this Letter, we propose a quantum algorithm for the simulation of fast nonadiabatic chemical processes together with an initialization scheme for quantum hardware calculations. In particular, we introduce a first-quantization method for the time evolution of a wave packet on two coupled harmonic potential energy surfaces (Marcus model). In our approach, the computational resources scale polynomially in the system dimensions, opening up new avenues for the study of photophysical processes that are classically intractable.
In this work, we present a quantum algorithm for direct first-principles simulation of electron-nuclear dynamics on a first-quantized real-space grid. Our algorithm achieves best-in-class efficiency for block-encoding the pre-Born-Oppenheimer molecular Hamiltonian by harnessing the linear scaling of swap networks for implementing the quadratic number of particle interactions, while using a novel alternating sign implementation of the Coulomb interaction that exploits highly optimized arithmetic routines. We benchmark our approach for a series of scientifically and industrially relevant chemical reactions. We demonstrate over an order-of-magnitude reduction in costs compared to previous state-of-the-art for the NH3+BF3\rm NH_3+BF_3NH3​+BF3​ reaction, achieving a Toffoli cost of 8.7×1098.7\times10^{9}8.7×109 per femtosecond using 136213621362 logical qubits (system + ancillas). Our results significantly lower the resources required for fault-tolerant simulations of photochemical reactions, while providing a suite of algorithmic primitives that are expected to serve as foundational building blocks for a broader class of quantum algorithms.
ConspectusSimulating molecular dynamics (MD) within a comprehensive quantum framework has been a long-standing challenge in computational chemistry. An exponential scaling of computational cost renders solving the time dependent Schrödinger equation (TDSE) of a molecular Hamiltonian, including both electronic and nuclear degrees of freedom (DOFs), as well as their couplings, infeasible for more than a few DOFs. In the Born-Oppenheimer (BO), or adiabatic, picture, electronic and nuclear parts of the wave function are decoupled and treated separately. Within this framework, the nuclear wave function evolves along potential energy surfaces (PESs) computed as solutions to the electronic Schrödinger equation parametrized in the nuclear DOFs. This approximation, together with increasingly elaborate numerical approaches to solve the nuclear time dependent Schrödinger equation (TDSE), enabled the treatment of up to a few dozens of degrees of freedom (DOFs). However, for particular applications, such as photochemistry, the BO approximation breaks down. In this regime of non-adiabatic dynamics, solving the full molecular problem including electron-nuclear couplings becomes essential, further increasing the complexity of the numerical solution. Although valuable methods such as multiconfigurational time-dependent Hartree (MCTDH) have been proposed for the solution of the coupled electron-nuclear dynamics, they remain hampered by an exponential scaling in the number of nuclear DOFs and by the difficulty of finding universal variational forms.In this Account, we present a perspective on novel quantum computational algorithms, aiming to alleviate the exponential scaling inherent to the simulation of many-body quantum dynamics. In particular, we focus on the derivation and application of quantum algorithms for adiabatic and non-adiabatic quantum dynamics, which include efficient approaches for the calculation of the BO potential energy surfaces (PESs). Thereafter, we study the time-evolution of a model system consisting of two coupled PESs in first and second quantization. In a first application, we discuss a recently introduced quantum algorithm for the evolution of a wavepacket in first quantization and exploit the potential quantum advantage of mapping its spatial grid representation to logarithmically many qubits. For the second demonstration, we move to the second quantization framework and review the scaling properties of two alternative time-evolution algorithms, namely, a variational quantum algorithm (VQA) (based on the McLachlan variational principle) and conventional Trotter-type evolution (based on a Lie-Trotter-Suzuki formula). Both methods clearly demonstrate the potential of quantum algorithms and their favorable scaling compared to the available classical approaches. However, a clear demonstration of quantum advantage in the context of molecular quantum dynamics may require the implementation of these algorithms in fault-tolerant quantum computers, while their application in near-term, noisy quantum devices is still unclear and deserves further investigation.
Quantum computers were first proposed to perform simulation -- in particular, quantum simulation. The premise is that such computers can simulate quantum dynamics exponentially faster than a classical computer. Some of the early proposals of practical applications of quantum computers come from quantum chemistry. Algorithms for more general systems, described by ordinary and partial differential equations, emerged later on. This thesis grounds on an extensive amount of prior research and proposes a set of improvements as well as new algorithms or algorithmic tools, focusing on applications from quantum chemistry and differential equations.First, we propose a technique relating to finding ground-states for electronic systems via the variational quantum eigensolver. The presented method enables solving the problem on early quantum hardware by a partitioning of the computational problem into smaller problems, using only classical resources to perform the partitioning. Next, the thesis considers simulation problems from chemistry in a more general sense. Following the idea that dynamical simulation of many chemical systems is efficient, whereas preparing ground-states is a `hard' problem, our computational framework leverages simulation routines to prepare molecular states as an input to a computation, relying only on `hard' input states for small problem instances. The preparation relies on dynamical scattering of initial fragments supported by a trap potential, allowing to estimate the success probability for certain bonds. A weak measurement scheme enables preparation of molecular states. Furthermore, this dissertation investigates quantum algorithms for differential equations. More specifically, the the Carleman linearization approach is considered to solve nonlinear differential equations. This entails bounding the Carleman truncation error, re-scaling of the solution to avoid an exponentially vanishing success probability, and discussing higher-order discretization. Moreover, this thesis introduced a penalty-based method to enforce constraints on the solution of differential equations, with inspiration from complex absorbing potentials and the quantum Zeno effect. We bound the approximation errors and embed the penalty method into an efficient quantum algorithm, with computational overhead only logarithmic in the penalty's strength. Efficiency is enabled by an interaction-picture approach with fast-forwardable constraint projections.
We present a comprehensive end-to-end framework for simulating the real-time dynamics of chemical systems on a fault-tolerant quantum computer, incorporating both electronic and nuclear quantum degrees of freedom. An all-particle simulation is nominally efficient on a quantum computer, but practically infeasible. Hence, central to our approach is the construction of a first-quantized plane-wave algorithm making use of pseudoions. The latter consolidate chemically inactive electrons and the nucleus into a single effective dynamical ionic entity, extending the well-established concept of pseudopotentials in quantum chemistry to a two-body interaction. We explicitly describe efficient quantum circuits for initial state preparation across all degrees of freedom, as well as for block-encoding the Hamiltonian describing interacting pseudoions and chemically active electrons, by leveraging recent advances in quantum rejection sampling to optimize the implementations. To extract useful chemical information, we first design molecular fingerprints by combining density-functional calculations with machine learning techniques, and subsequently validate them through surrogate classical molecular dynamics simulations. These fingerprints are then coherently encoded on a quantum computer for efficient molecular identification via amplitude estimation. We provide an extensive analysis of the cost of running the algorithm on a fault-tolerant quantum computer for several chemically interesting systems. As an illustration, simulating the interaction between NH3\mathrm{NH_3}NH3​ and BF3\mathrm{BF_3}BF3​ (a 40-particle system) requires 808 logical qubits to encode the problem, and approximately 101110^{11}1011 Toffoli gates per femtosecond of time evolution. Our results establish a foundation for further quantum algorithm development targeting chemical and material dynamics.
Accurately simulating molecular dynamics during chemical reactions remains a central challenge in computational chemistry. These processes are inherently quantum mechanical, involving coupled electronic and nuclear motion and non-adiabatic effects. A fully quantum description is therefore required, yet the associated computational cost grows exponentially with system size. Even with modern supercomputers, storing and evolving a molecular wavefunction rapidly becomes intractable, limiting exact simulations of chemical dynamics. Quantum simulation offers a promising alternative by using controllable quantum systems to directly reproduce molecular dynamics. However, fully digital, qubit-based approaches remain impractical for chemistry due to limited qubit numbers, coherence times, and gate fidelities. This motivates the exploration of more resource-efficient quantum architectures. In this thesis, we demonstrate that mixed-qudit-boson (MQB) quantum simulators provide a practical platform for simulating chemical dynamics in the quantum regime. In MQB devices, multilevel qudits encode electronic states while bosonic modes natively represent vibrational degrees of freedom, avoiding costly qubit encodings of nuclear motion and substantially reducing resource requirements. The thesis makes three main contributions. First, it reports the direct observation of geometric-phase interference in non-adiabatic dynamics using an MQB simulation of the Jahn–Teller model. Second, it extends the MQB framework to open-system chemical dynamics through programmable Lindblad dissipation. Third, it presents a resource analysis showing that MQB simulators can reduce resource costs by several orders of magnitude relative to qubit-only approaches. Together, these results establish MQB quantum simulators as a promising route for studying chemical dynamics beyond the reach of classical computation.