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arXiv:2601.19006

Frequency- and time-resolved second order quantum coherence function of IDTBT single-molecule fluorescence

Quanwei Li, Yuping Shi, Lam Lam, K. Birgitta Whaley, Graham Fleming

cond-mat.mtrl-sciphysics.chem-phquant-phSubmitted Jan 26, 2026• Announced Jan 28, 2026
v1 · Jan 26, 2026v2 · Feb 24, 2026
arXivHTMLPDF

Abstract

The frequency- and time-resolved second order quantum coherence function (g(2)(τ)) of single-molecule fluorescence has recently been proposed as a powerful new quantum light spectroscopy that can reveal intrinsic quantum coherence in excitation energy transfer in molecular systems ranging from simple dimers to photosynthetic complexes. Yet, no experiments have been reported to date. Here, we have developed a single-molecule fluorescence g(2)(τ) quantum light spectroscopy (SMFg2-QLS) that can simultaneously measure the fluorescence intensity, lifetime, spectra, and g(2)(τ) with frequency resolution, for a single molecule in a controlled environment at both room temperature and cryogenic temperature. As a proof of principle, we have studied single molecules of IDTBT (indacenodithiophene-co-benzothiadiazole), a semiconducting donor-acceptor conjugated copolymer with a chain-like structure that shows a high carrier mobility and annihilation-limited long-range exciton transport. We have observed different g(2)(τ=0) values with different bands or bandwidths of the single molecule IDTBT fluorescence. The general features are consistent with theoretical predictions and suggest non-trivial excited state quantum dynamics, possibly showing quantum coherence, although further analysis and confirmation will require additional theoretical calculations that take into account the complexity and inhomogeneity of individual IDTBT single molecular chains. Our results demonstrate the feasibility and promise of frequency- and time-resolved SMFg2-QLS to provide new insights into molecular quantum dynamics and to reveal signatures of intrinsic quantum coherence in photosynthetic light harvesting that are independent of the nature of the light excitation.

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The frequency- and time-resolved second order quantum coherence function (g(2)(τ)) of single-molecule fluorescence has recently been proposed as a powerful new quantum light spectroscopy that can reveal intrinsic quantum coherence in excitation energy transfer in molecular systems ranging from simple dimers to photosynthetic complexes. Yet, no experiments have been reported to date. Here, we have developed a single-molecule fluorescence g(2)(τ) quantum light spectroscopy (SMFg2-QLS) that can simultaneously measure the fluorescence intensity, lifetime, spectra, and g(2)(τ) with frequency resolution, for a single molecule in a controlled environment at both room temperature and cryogenic temperature. As a proof of principle, we have studied single molecules of IDTBT (indacenodithiophene-co-benzothiadiazole), a semiconducting donor-acceptor conjugated copolymer with a chain-like structure that shows a high carrier mobility and annihilation-limited long-range exciton transport. We have observed different g(2)(τ=0) values with different bands or bandwidths of the single molecule IDTBT fluorescence. The general features are consistent with theoretical predictions and suggest non-trivial excited state quantum dynamics, possibly showing quantum coherence, although further analysis and confirmation will require additional theoretical calculations that take into account the complexity and inhomogeneity of individual IDTBT single molecular chains. Our results demonstrate the feasibility and promise of frequency- and time-resolved SMFg2-QLS to provide new insights into molecular quantum dynamics and to reveal signatures of intrinsic quantum coherence in photosynthetic light harvesting that are independent of the nature of the light excitation.
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The study of quantum phenomena in biology has received significant attention in the last decade. One of the problems of most interest is the understanding of quantum effects during the first steps of photosynthesis. Ultrafast two-dimensional electronic spectroscopy has revealed that pigment-protein complexes responsible for light- harvesting and charge separation in photosynthetic organisms can support quantum coherent dynamics in the excited state, for up to few hundreds of femtoseconds. The leading hypothesis on the mechanisms supporting this coherent behaviour is quan- tum interactions between electronic and some specific vibrational motions in the excited state. This hypothesis, however, awaits unambiguous confirmation. Among the most powerful techniques to investigate the quantum behaviour of an emitter is the study of quantum optical properties of the light it emits. This thesis de- velops theoretical studies showing that frequency-filtered and time-resolved photon counting statistics of the light emitted by a prototype photosynthetic unit can give important insight into the quantum coherent nature and the mechanisms underlying excited state dynamics in single photosynthetic complexes. By developing a pertur- bative and efficient approach to the computation of frequency- and time- resolved photon correlation functions, we show that such correlations have the potential to give unambiguous signatures of coherence contributions to the steady state emis- sion. For a light-harvesting unit emitting in free space, the signatures of excited state coherence manifest themselves as non-trivial antibunching. This feature can- not be probed by measuring unfiltered photon correlations. We then consider the situation in which a prototype energy transfer unit is embedded in an optical cavity such that its emission rate is enhanced. In this case we observed a rich behaviour of the frequency-filtered, second-order photon correlations that allows a clear distinc- tion of coherence contributions, and their variation, depending of the electronic and vibrational interactions in the system of interest.
Classical time-resolved optical spectroscopy experiments are performed using sequences of ultrashort light pulses, with photon fluxes incident on the sample which are many orders of magnitude higher than real-world conditions corresponding to sunlight illumination. Here we overcome this paradigm by exploiting quantum correlations to perform time-resolved spectroscopy with entangled photons. Starting from spontaneous parametric down-conversion driven by a continuous-wave laser, we exploit the temporal entanglement between randomly generated signal/idler pairs to obtain temporal resolution, and their spectral entanglement to select the excitation frequency. We also add spectral resolution in detection, using a Fourier transform approach which employs a common-path interferometer. We demonstrate the potential of our entangled-photon streak camera by resolving, at the single-photon level, excitation energy transfer cascades from LH2 to LH1 in the photosynthetic membrane and disentangling the lifetimes of two dyes in a mixture. We show that time-resolved spectroscopy with quantum light can be performed without compromising measurement time, recording a fluorescence time trace in less than a minute even for samples with low quantum yield, which can be reduced to sub-second times with acceptable signal-to-noise ratio. Our results provide a new approach to ultrafast optical spectroscopy, where experiments are performed under conditions comparable to real-world sunlight illumination.
Ultrafast pulses allow observation of molecular dynamics with femtosecond time resolution through pump probe experiments. However, averaging over an ensemble of molecules tends to wash out phase sensitive information, necessary to probe quantum effects, due to the intrinsic inhomogeneity in molecular conformations, orientations and interactions that lead to unique potential energy landscapes for each molecule. It is therefore important to go beyond the ensemble average when looking at quantum dynamics of organic systems at room temperature, and resolve the behaviour of specific molecules on an individual basis. In this thesis, we show the creation, manipulation and observation of ultrafast coherent effects in single molecules at room temperature, and resolve a certain measure of environmental influence on the specific dynamics of each molecule. Moreover, we apply this insight to investigate a functional light harvesting biosystem, and lay the basis for a technique that has the time and space resolution required to observe these systems in vivo. In chapter 1, we introduce the concepts and techniques the research in this thesis is built on. In chapter 2, we treat the possibility of controlling ultrafast pulses at the high-NA diffraction limit, and come to conclusions about the procedure to follow there that hold for all pulse-shaping experiments. We show in proof of principle experiments that we can control the ultrafast characteristics of optical pulses in nanometric excitation volumes. In chapters 3 and 4 we report the creation, detection and control of ultrafast quantum dynamics in single organic molecules at room temperature. We show that manipulation of superposition states is possible in these systems within a coherence dephasing time of ~50 fs. This leads to the first observation of rabi-oscillations in room temperature single molecules, to ultrafast operation of an organic qubit, and to the creation of non-stationary superposition states (vibrational wavepackets). We probe the influence of the local environment on the composition and dynamics of these wavepackets and show we can optimize the state preparation protocol for each individual molecule in its own nanoenvironment, leading to high fidelity coherent control. In these chapters we lay out the proof of principle work of detecting the quantumdynamics of a complex system in interaction with its environment at room temperature. In chapter 5 we discuss application of these techniques to the investigation of long lived coherence in photosynthetic systems. We show that electronic coherence between different rings of the LH2 system persists to time scales of 100s of femtoseconds at room temperature. Moreover we show that the energy transfer pathways in LH2 adapt to environmentally induced changes in the molecule and that the nature of the transfer remains coherent for each pathway, providing strong evidence that coherent energy transfer is the optimum process for energy transfer in photosynthesis. Finally, in chapter 6 we take the technical development one step further and report on the creation of a framework based on plasmonic antennas that allows for control of the amplitude-phase characteristics in nanometric sized hotspot fields. We show for the first time that the ultrafast characteristics of plasmonic hotspots can directly be engineered through design of the plasmonic system and experimentally demonstrate two much-anticipated examples: a sub-diffraction resolution phase shaper and an ultrafast plasmonic switch for pump probe experiments. The results presented in this thesis form the first creation and observation of ultrafast coherent dynamics in individual molecular systems at room temperature. This is a necessary step to be able to do true quantum tomography in complex systems, resolve the influence of the environment on molecular dynamics, and investigate the physics that determines evolutionary optimization and functionality in biomolecules.
The use of techniques for analyzing the fluorescence photon statistics of a single molecule for modeling single-emitter dynamics is demonstrated. The photon distribution function measured in the fluorescence of a single tetra-tert-butylterrylene molecule embedded in polyisobutylene is used to devise a theoretical model for single emitters with complicated fluorescence photon statistics. Our analysis was carried out with the theoretical approach developed by Osad'ko and co-workers [J. Chem. Phys. 130, 064904 (2009); J. Phys. Chem. C 114, 10349 (2010)] for photon distribution functions. Although the experimental data were obtained at cryogenic temperature where narrow zero-phonon lines are present, the method is based on a purely statistical approach and does not require spectrally resolved data. It can also be applied to the analysis of broad fluorescence bands as measured at room temperature. Therefore, the method has prospects for revealing the quantum dynamics of single biological objects and other single quantum emitters in ambient conditions.
Ultrafast spectroscopy of molecular systems is fundamentally constrained by the Fourier uncertainty principle: high temporal resolution smears out electronic state signatures, while high spectral resolution obscures dynamic information. Here we overcome this limitation using time-resolved quantum ghost spectroscopy (tr-QGS) with entangled photon pairs, which enables independent control of temporal and spectral scales. We apply this approach to perylene bismide (PBI-1) trimers for energy transfer,by combining a quantum description of light-molecule interaction with time-dependent density matrix renormalization group (TD-DMRG) simulations. This explicitly includes five vibrational modes and nonadiabatic coupling between electronic states. Our simulations reveal that tr-QGS uniquely captures electronic coherence oscillating at 0.7 eV for >50 fs, a signature of nonadiabatic coupling that was obscured in conventional time-resolved fluorescence due to Fourier-limited broadening. Moreover, we observe a direct transfer from electronic to vibrational coherence at 200 fs, providing real-time visualization of vibronic relaxation pathways. The entangled photon correlation enables a sensitivity below the shot-noise limit and suppresses photobleaching artifacts that plague classical measurements. These results establish tr-QGS as a transformative tool for interrogating nonadiabatic dynamics in molecular aggregates, light-harvesting complexes, and photocatalysts, offering a route to reveal quantum coherence in chemistry with unprecedented time-energy precision.