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arXiv:2601.10588

Searching for Quantum Effects in the Brain: A Bell-Type Test for Nonclassical Latent Representations in Autoencoders

I. K. Kominis, C. Xie, S. Li, M. Skotiniotis, G. P. Tsironis

quant-phcs.LGphysics.bio-phSubmitted Jan 15, 2026• Announced Jan 16, 2026• 0 citations• Revised Aug 3, 2026 (v2)
v1 · Jan 15, 2026v2 · Aug 3, 2026
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Abstract

Whether neural information processing is entirely classical or involves quantum-mechanical elements remains an open question. Here we propose a model-agnostic, information-theoretic test of nonclassicality that bypasses microscopic assumptions and instead probes the structure of neural representations themselves. Using autoencoders as a transparent model system, we introduce a Bell-type consistency test in latent space, and ask whether decoding statistics obtained under multiple readout contexts can be jointly explained by a single positive latent-variable distribution. By shifting the search for quantum-like signatures in neural systems from microscopic dynamics to experimentally testable constraints on information processing, this work opens a new route for probing the fundamental physics of neural computation. The proposed test identifies violations of classical latent-variable consistency at the level of statistical representations, without assuming a specific underlying physical mechanism.

Journal reference
New J. Phys. 28, 074511 (2026)
Comments
11 pages, 4 figures

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Whether neural information processing is entirely classical or involves quantum-mechanical elements remains an open question. Here we propose a model-agnostic, information-theoretic test of nonclassicality that bypasses microscopic assumptions and instead probes the structure of neural representations themselves. Using autoencoders as a transparent model system, we introduce a Bell-type consistency test in latent space, and ask whether decoding statistics obtained under multiple readout contexts can be jointly explained by a single positive latent-variable distribution. By shifting the search for quantum-like signatures in neural systems from microscopic dynamics to experimentally testable constraints on information processing, this work opens a new route for probing the fundamental physics of neural computation. The proposed test identifies violations of classical latent-variable consistency at the level of statistical representations, without assuming a specific underlying physical mechanism.
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Recent interdisciplinary research has raised interest in whether non-classical physical principles may impose fundamental constraints on how neural information can be observed, extracted, or decoded. While conventional neuroscience models neural signaling primarily through classical electrochemical processes, a growing body of theoretical literature has speculated that quantum-mechanical concepts-such as coherence, entanglement, or quantum-inspired information processing-may offer alternative perspectives on the limits of neural observability. This article provides a critical and integrative review of theoretical proposals situated at the intersection of neuroscience, quantum biology, and information theory, without assuming the physical realizability of quantum information processing in biological neural systems. We examine conceptual motivations, key physical constraints (including decoherence, thermal noise, and system complexity), and unresolved theoretical challenges that arise when extending classical neural decoding frameworks toward non-classical regimes. Rather than proposing an experimentally validated mechanism for brain decoding, this work focuses on identifying conceptual boundaries, potential misinterpretations, and open questions that must be addressed before non-classical approaches to neural signal decoding can be meaningfully evaluated. Ethical considerations, methodological limitations, and future research directions are discussed to clarify the conditions under which such speculative frameworks may contribute to neuroscience, while avoiding overextension beyond current empirical evidence.
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Since Bell's theorem, it is known that local realism fails to explain quantum phenomena. Bell inequality violations manifestly show the incompatibility of quantum theory with classical notions of cause and effect. As recently found, however, the instrumental scenario-a pivotal tool in causal inference-allows for nonclassicality signatures going beyond this paradigm. If we are not limited to observational data and can intervene in our setup, then we can witness quantum violations of classical bounds on the causal influence among the involved variables even when no Bell-like violation is possible. That is, through interventions, the quantum behavior of a system that would seem classical can be demonstrated. Using a photonic setup-faithfully implementing the instrumental causal structure and switching between observation and intervention run by run-we experimentally witness such a nonclassicality. We also test quantum bounds for the causal influence, showing that they provide a reliable tool for quantum causal modeling.
Consciousness presents a structural puzzle: a unified, context-sensitive, globally integrated mode of experience emerging from distributed neural dynamics. While classical neuroscience has mapped synaptic, oscillatory, and network-level mechanisms with increasing precision, debate persists as to whether classical formalisms fully capture the integrative and contextual features of conscious processing. This review examines whether quantum principles offer explanatory leverage in two distinct senses: as formal mathematical frameworks for modeling contextual cognition, and as mechanistic hypotheses proposing biologically instantiated non-classical states. We surveyed empirical and theoretical developments spanning zero-quantum-coherence in MRI signals, entanglement-structured learning paradigms, quantum-inspired computational models, and proposed neural substrates, including microtubules, nuclear spins, and photonic architectures. Although certain findings have been interpreted as consistent with a non-classical structure, no study to date has demonstrated entanglement, long-lived coherence, or collapse dynamics in neural tissue under operational criteria comparable to those used in controlled quantum systems. Replication remains limited, biological entanglement witnesses are not yet established, and nonlinear classical dynamics can reproduce many putative quantum signatures. Accordingly, the decisive question is not whether the brain is quantum, but whether its dynamics exceed the explanatory reach of rigorously defined classical models. Progress hinges on replication, adversarial scrutiny, and operational criteria precise enough to discriminate genuine non-classical correlations from classical complexity. Whether quantum mechanisms ultimately prove necessary or refined classical models remain sufficient, this inquiry compels a deeper understanding of integration, contextuality, and the physical constraints shaping conscious experience.