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arXiv:2512.14415 · Quantum Science and Technology

Ground State Energy via Adiabatic Evolution and Phase Measurement for a Molecular Hamiltonian on an Ion-Trap Quantum Computer

Ludwig Nützel, Michael J. Hartmann, Henrik Dreyer, Etienne Granet

quant-phSubmitted Dec 16, 2025• Announced Dec 17, 2025• 0 citations
v1 · Dec 16, 2025v2 · Dec 22, 2025
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Abstract

Estimating molecular ground-state energies is a central application of quantum computing, requiring both the preparation of accurate quantum states and efficient energy readout. Understanding the effect of hardware noise on these experiments is crucial to distinguish errors that have low impact, errors that can be mitigated, and errors that must be reduced at the hardware level. We ran a state preparation and energy measurement protocol on an ion-trap quantum computer, without any non-scalable off-loading of computational tasks to classical computers, and show that leakage errors are the main obstacle to chemical accuracy. More specifically, we apply adiabatic state preparation to prepare the ground state of a six-qubit encoding of the H3+ molecule and extract its energy using a noise-resilient variant of iterative quantum phase estimation. Our results improve upon the classical Hartree-Fock energy. Analyzing the effect of hardware noise on the result, we find that while coherent and incoherent noise have little influence, the hardware results are mainly impacted by leakage errors. Absent leakage errors, noisy numerical simulations show that with our experimental settings we would have achieved close to chemical accuracy, even shot noise included. These insights highlight the importance of targeting leakage suppression in future algorithm and hardware development.

Journal reference
Quantum Sci. Technol. 11 035038 (2026)
DOI
10.1088/2058-9565/ae7ea8

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Estimating molecular ground-state energies is a central application of quantum computing, requiring both the preparation of accurate quantum states and efficient energy readout. Understanding the effect of hardware noise on these experiments is crucial to distinguish errors that have low impact, errors that can be mitigated, and errors that must be reduced at the hardware level. We ran a state preparation and energy measurement protocol on an ion-trap quantum computer, without any non-scalable off-loading of computational tasks to classical computers, and show that leakage errors are the main obstacle to chemical accuracy. More specifically, we apply adiabatic state preparation to prepare the ground state of a six-qubit encoding of the H3+ molecule and extract its energy using a noise-resilient variant of iterative quantum phase estimation. Our results improve upon the classical Hartree-Fock energy. Analyzing the effect of hardware noise on the result, we find that while coherent and incoherent noise have little influence, the hardware results are mainly impacted by leakage errors. Absent leakage errors, noisy numerical simulations show that with our experimental settings we would have achieved close to chemical accuracy, even shot noise included. These insights highlight the importance of targeting leakage suppression in future algorithm and hardware development.
Abstract Quantum computing leverages the quantum resources of superposition and entanglement to efficiently solve computational problems considered intractable for classical computers. Examples include calculating molecular and nuclear structure, simulating strongly interacting electron systems, and modeling aspects of material function. While substantial theoretical advances have been made in mapping these problems to quantum algorithms, there remains a large gap between the resource requirements for solving such problems and the capabilities of currently available quantum hardware. Bridging this gap will require a co-design approach, where the expression of algorithms is developed in conjunction with the hardware itself to optimize execution. Here we describe an extensible co-design framework for solving chemistry problems on a trapped-ion quantum computer and apply it to estimating the ground-state energy of the water molecule using the variational quantum eigensolver (VQE) method. The controllability of the trapped-ion quantum computer enables robust energy estimates using the prepared VQE ansatz states. The systematic and statistical errors are comparable to the chemical accuracy, which is the target threshold necessary for predicting the rates of chemical reaction dynamics, without resorting to any error mitigation techniques based on Richardson extrapolation.
Emergent quantum computing technologies are widely expected to provide novel approaches in the simulation of quantum chemistry. Despite rapid improvements in the scale and fidelity of quantum computers, high resource requirements make the execution of quantum chemistry experiments challenging. Typical experiments are limited in the number of qubits used, incur a substantial shot cost, or require complex architecture-specific optimization and error mitigation techniques. In this paper, we propose a conceptually simple benchmarking approach involving the use of multi-ancilla quantum phase estimation. Our approach is restricted to very small chemical systems, and does not scale favorably beyond molecular systems that can be described with 222 qubits; however, this restriction allows us to generate circuits that scale quadratically in gate count with the number of qubits in the readout register. This enables the execution of quantum chemistry circuits that act on many qubits, while producing meaningful results with limited shot counts. We use this technique (with 200200200 shots per experiment) to calculate the ground state energy of molecular hydrogen to 505050 bits of precision (8.9×10−168.9 \times 10^{-16}8.9×10−16 hartree) on a 565656-qubit trapped-ion quantum computer, negating Trotter error. Including Trotter error, we obtain between 323232 and 363636 bits of precision (1.5∗10−101.5 * 10^{-10}1.5∗10−10 and 6.0∗10−116.0 * 10^{-11}6.0∗10−11 hartree respectively), vastly exceeding chemical accuracy (1.6∗10−31.6 * 10^{-3}1.6∗10−3 hartree) against Full Configuration Interaction. We consider application of the approach to deeper circuits, and discuss potential as a benchmark task for near-term quantum devices.
molecule, emphasizing practical implementation and performance on current quantum hardware. Our research presents a comparative study of HEA and UCCSD ansätze on noiseless and noisy simulations and implements VQE on recent IBM quantum computer noise models and a real quantum computer, IBM Fez, providing a fully functional code employing Qiskit 1.2. Our experiments confirm UCCSD's reliability in ideal conditions, while the HEA demonstrates greater robustness to hardware noise, achieving chemical accuracy on state-vector simulation (SVS). The results reveal that achieving ground-state energy within chemical accuracy is feasible without error mitigation during VQE convergence. We demonstrate that current quantum devices effectively optimize circuit parameters despite misestimating simulated energies. The SVS-evaluated energies provide a more accurate representation of the solution quality compared to QPU-estimated energy values, indicating that VQE converges to the correct ground state despite quantum noise. Our study also applies noise mitigation as a postprocessing technique, using zero-noise extrapolation (ZNE) on a real quantum computer. The detailed methodologies presented in this study, including Hamiltonian construction and Fermionic-to-qubit transformations, facilitate flexible adaptation of the VQE approach for various algorithm variants and across different levels of algorithmic implementation.
Variational quantum eigensolvers (VQEs) are among the most promising quantum algorithms for solving electronic structure problems in quantum chemistry, particularly during the noisy intermediate-scale quantum (NISQ) era. In this study, we investigate the capabilities and limitations of VQE algorithms implemented on current quantum hardware for determining molecular ground-state energies, focusing on the adaptive derivative-assembled pseudo-Trotter ansatz VQE (ADAPT-VQE). To address the significant computational challenges posed by molecular Hamiltonians, we explore various well known strategies to simplify the Hamiltonian, optimize the ansatz, and improve classical parameter optimization through modifications of the COBYLA optimizer. These enhancements are integrated into a tailored quantum computing implementation designed to minimize the circuit depth and computational cost. Using benzene as a benchmark system, we demonstrate the application of these optimizations on an IBM quantum computer. Despite these improvements, our results highlight the limitations imposed by current quantum hardware, particularly the impact of quantum noise on state preparation and energy measurement. The noise levels in today's devices prevent meaningful evaluations of molecular Hamiltonians with sufficient accuracy to produce reliable quantum chemical insights. Finally, we extrapolate the requirements for future quantum hardware to enable practical and scalable quantum chemistry calculations using VQE algorithms. This work provides an assessment of current quantum algorithms for molecular modeling on real quantum hardware, highlighting the impact of noise and hardware limitations on the achievable accuracy.
Despite its simplicity and strong theoretical guarantees, adiabatic state preparation has received considerably less interest than variational approaches for the preparation of low-energy electronic structure states. Two major reasons for this are the large number of gates required for Trotterizing time-dependent electronic structure Hamiltonians, as well as discretization errors heating the state. We show that a recently proposed randomized algorithm [E. Granet and H. Dreyer, npj Quantum Inf. 10, 82 (2024)], which implements exact adiabatic evolution without heating and with far fewer gates than Trotterization, can overcome this problem. We develop three methods for measuring the energy of the prepared state in an efficient and noise-resilient manner, yielding chemically accurate results on a four-qubit molecule in the presence of realistic gate noise, without the need for error mitigation. These findings suggest that adiabatic approaches to state preparation could play a key role in quantum chemistry simulations both in the era of noisy as well as error-corrected quantum computers.
Achieving high-precision measurements on near-term quantum devices is critical for advancing quantum computing applications. Quantum computers suffer from high readout errors, making quantum simulations with high accuracy requirements particularly challenging. This paper implements practical techniques to reach accuracies essential for quantum chemistry by addressing key overheads and noise sources. Specifically, we leverage locally biased random measurements for reducing shot overhead, repeated settings with parallel quantum detector tomography for reducing circuit overhead and mitigating readout errors, and blended scheduling for mitigating time-dependent noise. We demonstrate these techniques via molecular energy estimation of the BODIPY molecule on a Hartree-Fock state on an IBM Eagle r3, obtaining a reduction in measurement errors by an order of magnitude from 1-5% to 0.16%. These strategies pave the way for more reliable quantum computations, particularly for applications requiring precise molecular energy calculations.