As quantum computing advances towards practical applications, quantum operating systems become inevitable, where multi-programming -- the core functionality of operating systems -- enables concurrent execution of multiple quantum programs to enhance hardware utilization. However, most quantum compilation work focuses solely on single-circuit execution, severely limiting resource efficiency and hindering quantum operating system development. We propose Dynamic Neutral Atom Multi-programming Optimizer (DYNAMO), a method that realizes multi-programming on neutral atom quantum architectures through parallel compilation and intelligent resource allocation across multiple quantum processing units (QPUs). DYNAMO addresses two critical challenges: inefficient and difficult resource partitioning, and complex scheduling conflicts from concurrent program. Our method enables efficient spatial and temporal resource sharing while maintaining circuit correctness and hardware constraints. Experimental evaluation across circuits ranging from 12 to over 1200 gates demonstrates that DYNAMO achieves up to 14.39x compilation speedup while reducing execution stages by an average of 50.47%. Furthermore, DYNAMO successfully distributes workloads across multiple QPUs with balanced resource utilization. By enabling efficient multi-programming capabilities, DYNAMO establishes a critical foundation towards realizing practical quantum operating systems.
As quantum computing advances towards practical applications, quantum operating systems become inevitable, where multi-programming -- the core functionality of operating systems -- enables concurrent execution of multiple quantum programs to enhance hardware utilization. However, most quantum compilation work focuses solely on single-circuit execution, severely limiting resource efficiency and hindering quantum operating system development. We propose Dynamic Neutral Atom Multi-programming Optimizer (DYNAMO), a method that realizes multi-programming on neutral atom quantum architectures through parallel compilation and intelligent resource allocation across multiple quantum processing units (QPUs). DYNAMO addresses two critical challenges: inefficient and difficult resource partitioning, and complex scheduling conflicts from concurrent program. Our method enables efficient spatial and temporal resource sharing while maintaining circuit correctness and hardware constraints. Experimental evaluation across circuits ranging from 12 to over 1200 gates demonstrates that DYNAMO achieves up to 14.39x compilation speedup while reducing execution stages by an average of 50.47%. Furthermore, DYNAMO successfully distributes workloads across multiple QPUs with balanced resource utilization. By enabling efficient multi-programming capabilities, DYNAMO establishes a critical foundation towards realizing practical quantum operating systems.
Neutral atom Quantum Processing Units (QPUs) are emerging as a popular quantum computing technology due to their large qubit counts and flexible connectivity. However, performance challenges arise as large circuits experience significant fidelity drops, while small circuits underutilize hardware and face initialization latency issues. To tackle these problems, we propose multi-programming on neutral atom QPUs, allowing the co-execution of multiple circuits by logically partitioning the qubit array. This approach increases resource utilization and mitigates initialization latency while maintaining result fidelity. Currently, state-of-the-art compilers for neutral atom architectures do not support multi-programming.
To fill this gap, we introduce MultiQ, the first system designed for this purpose. MultiQ addresses three main challenges: (i) it compiles circuits into a virtual zone layout to optimize spatio-temporal hardware utilization; (ii) it parallelizes the execution of co-located circuits, allowing single hardware instructions to operate on different circuits; and (iii) it includes an algorithm to verify the functional independence of the bundled circuits. MultiQ functions as a cross-layer system comprising a compiler, controller, and checker. Our compiler generates \emph{virtual zone layouts} to enhance performance, while the controller efficiently maps these layouts onto the hardware and resolves any conflicts. The checker ensures the correct bundling of circuits.
Experimental results show a throughput increase from 3.8× to 12.3× when multi-programming 4 to 14 circuits, with fidelity largely maintained, ranging from a 1.3% improvement for four circuits to only a 3.5% loss for fourteen circuits. Overall, MultiQ facilitates concurrent execution of multiple quantum circuits, boosting throughput and hardware utilization.
Neutral atom quantum computers (NAQC) are emerging as a promising, scalable quantum computing platform because of their long qubit coherence, flexible qubit arrangement, and multiqubit gate capabilities. However, circuit execution often requires physically moving qubits, making compilation a critical optimization challenge. We propose a circuit independent mathematical framework built on graph-theoretic combinatorial optimization that determines the minimal number of required qubit transfers. This model captures spatial constraints specific to NAQC platforms with zone-limited gate operations and multi-qubit gates. From this framework, we encode the qubit mapping problem as a nonlinear integer program and solve it using a genetic algorithm, enabling trade-offs between minimizing the total traveled distance and the number of parallel transfer operations. Compared to the state-of-the-art scalable compiler for zoned architectures, our approach consistently finds fewer transfers. Depending on the optimization focus, our method produces shorter traveled distances or fewer parallel transfer operations. This work provides both theoretical guaranties and a practical tool for efficient, architecture-aware quantum circuit compilation. As a result, practitioners can generate hardware-aware mappings that reduce movement-induced errors and better exploit atom transfer parallelism, directly improving execution efficiency on NAQC devices.
Neutral atom quantum computers (NAQCs) are emerging as a highly promising platform for scalable quantum computing, thanks to their long qubit coherence times, flexible qubit layouts, and ability to implement multi-qubit gates [1]. Despite these advantages,executing circuits often requires moving qubits physically, which makes compilation a crucial and challenging optimization task. To address this, we developed a circuit-independent compiler framework based on graph theory that determines the minimum number of qubit transfers needed, including those involved in multi-qubit gates. This model captures the spatial restrictions inherent to NAQC platforms with zone-limited gate operations. Using this framework, we formulated the qubit mapping problem as a nonlinear integer program and solved it with a genetic algorithm, enabling control over trade-offs between the total distance qubits travel and the number of parallel transfer operations (PTOs). When benchmarked against the leading ZAC compiler [2], our approach consistently reduces the number of qubit transfers. Depending on the optimization goal, it can either shorten the overall travel distance or minimize PTOs. The work presented in this poster thus provides a tool for efficient, architecture-aware quantum circuit compilation. [1] Ludwig Schmid et al, “Computational capabilities and compiler development for neutral atom quantum processors—connecting tool developers and hardware experts”, Quantum Sci. Technol. 9 033001, doi: 10.1088/2058-9565/ad33ac (2024) [2] W. Lin, D. B. Tan and J. Cong, “Reuse-Aware Compilation for Zoned Quantum Architectures Based on Neutral Atoms”, IEEE International Symposium on High Performance Computer Architecture (HPCA), Las Vegas, NV, USA, 2025, pp. 127-142, doi: 10.1109/HPCA61900.2025.00021 (2025
For a specific quantum chip, multi-programming helps to improve the overall throughput and resource utilization. However, previous solutions for mapping multiple programs often lead to resource under-utilization, high error rate, and low fidelity. In this paper, we propose a new approach to map concurrent quantum programs. Our approach has three critical components. The first one is the Community Detection Assisted Partition (CDAP) algorithm, which partitions physical qubits for concurrent quantum programs by considering physical typology and the error rate, avoiding the waste of robust resources. The second one is the X-SWAP scheme that enables inter-program SWAPs and prioritizes SWAPs associated with critical gates to reduce the SWAP overheads. Finally, we propose a compilation task scheduler, which dynamically selects concurrent quantum programs to be compiled and executed together based on estimated fidelity for the best practice. We evaluate our work on publicly available quantum computer IBMQ16 and a simulated quantum chip IBMQ50. Our work outperforms the state-of-the-art work for multi-programming on fidelity and compilation overheads by 12.0% and 11.6%, respectively.
Resource estimation is a significant challenge in evaluating fault tolerant quantum computers. Existing approaches often rely on either fixed architectural assumptions or coarse analytical models that fail to capture the interaction between hardware constraints and circuit compilation. This challenge is particularly acute for neutral atom quantum computers, where architectural features such as atom movement, measurement zones, and multi-species arrays introduce a broad design space for implementing fault tolerant computation. Addressing the need for a tighter feedback loop between hardware design and practical application development, we present a compilation-driven framework for quantum resource estimation that translates arbitrary quantum circuits into logical primitive operations with known physical resource costs. This framework allows for easily configurable hardware assumptions that enable rapid comparison of different architectural design choices. We apply our approach to two early fault tolerant quantum simulation and optimization workloads, assuming the use of the surface code, revealing several architectural trends. While the production of magic states continues to be the dominant source of overhead for these benchmarks, access to movement can save time on cultivation and important transversal gates. As problem size grows, routing and qubit movement become dominant bottlenecks, highlighting the need for movement-aware compiler optimizations and frugal routing strategies. Finally, our results suggest that neutral atom architectures combining dual-species arrays with controlled qubit movement offer a promising path toward near-term advantage on fault tolerant devices.
The scalability of neutral-atom quantum computing is increasingly limited by a compiler–architecture challenge: logical circuits must be mapped onto dynamically reconfigurable atom arrays while controlling crosstalk, transport overhead, and hardware constraints. To address this problem, we present ZAP, a co-designed zoned architecture and deterministic compiler for field-programmable atom arrays. ZAP partitions the array into storage and entanglement zones and combines hardware-aware ASAP-separate scheduling, look-ahead placement, and conflict-aware routing in a single-pass compilation flow, thereby avoiding the repeated global search used in prior approaches. Evaluated on structured quantum benchmarks and random 3-regular circuits, ZAP consistently delivers multi-order-of-magnitude compilation speedups while maintaining competitive or superior execution quality. Relative to ZAC and PowerMove, ZAP typically reduces compilation time from tens of seconds to below 0.1 s and achieves speedups exceeding 1,000×; relative to Enola, the speedup exceeds 10,000× on the evaluated suite. ZAP's fidelity gains are most pronounced on structured workloads with irregular connectivity and nonuniform qubit reuse, where its scheduling and placement decisions more effectively suppress crosstalk and limit transport-related loss, while on random circuits it remains competitive and preserves the same scalability advantage. These results show that hardware-structured, non-iterative compilation provides a practical path toward fast, scalable, and noise-aware neutral-atom quantum computing.