The accurate treatment of electron correlation in extended molecular systems remains computationally challenging using classical electronic structure methods. Hybrid quantum-classical algorithms offer a potential route to overcome these limitations; however, their practical deployment on existing quantum computers requires strategies that both reduce problem size and mitigate hardware noise. In this work, we investigate ground-state energy calculations of ligand-like molecules using Sample-based Quantum Diagonalization (SQD) within the Density Matrix Embedding Theory (DMET) framework, focusing on low-symmetry systems with diverse bonding motifs that exhibit subsystem-dependent variations in fragment-environment entanglement. These entanglement-based variations directly influence bath orbital construction, impurity sizes, and the structure of the embedded Hamiltonians, posing nontrivial challenges for both embedding and quantum sampling. By combining DMET fragmentation with SQD-based construction of reduced configuration spaces through quantum sampling and iterative configuration recovery, we perform quantum simulations on IBM's Eagle R3 (IBM Sherbrooke) and IBM's Heron R3 (IBM Boston) superconducting quantum hardware thereby, showing that the entanglement structure across embedding subsystems plays a central role in determining the efficiency and accuracy of the simulations. Despite these complexities, we show that the DMET-SQD framework yields ground-state energies in strong agreement with DMET-FCI benchmarks, achieving chemical accuracy (1 kcal/mol) across all systems studied. These results demonstrate that SQD-based quantum simulations can be robustly extended to low-symmetry, chemically realistic, industry relevant molecules, and highlight the importance of entanglement-aware embedding strategies for scalable quantum electronic structure calculations.
Quantum chemistry models atoms and molecules using quantum mechanics, with the electronic structure problem at its core. This problem, which determines the energy and properties of electrons in a molecule, is exponentially hard to solve exactly on classical computers. To approximate solutions, effective models introduce layers of simplifications. However, these approximations can fail for strongly correlated systems, necessitating alternative approaches. Quantum computers, capable of processing quantum information natively, offer a promising path to simulate molecular systems beyond classical reach, with potential applications in catalysis, materials science, and photochemistry. Despite rapid advancements in quantum hardware, practical quantum computations remain challenging due to limited resources. This thesis optimizes quantum resource usage in computational chemistry, introducing novel embedding techniques and exploring applications beyond ground-state energies. Chapter 1 establishes the foundation by reviewing quantum chemistry methods, from Hartree-Fock and Density Functional Theory (DFT) to active space approaches. It also provides an introduction to quantum computing for chemistry, focusing on near-term algorithms. The following chapters present novel methods aimed at reducing quantum resource requirements and tackling problems classical methods struggle with. Chapter 2 introduces a technique to reduce the
λ-norm of the electronic structure Hamiltonian, a key measure of quantum resource demand. By transforming molecular orbitals, this method enhances sampling efficiency in Noisy Intermediate-Scale Quantum (NISQ) algorithms and reduces runtime in Fault-Tolerant Quantum Computing (FTQC). Localized orbitals outperform canonical ones, and an orbital-optimization scheme is proposed to minimize the
λ-norm. Benchmarks on hydrogen chains, FeMoco, and Ruthenium complexes demonstrate its effectiveness. Chapter 3 presents the FragPT2 framework for simulating large systems with multiple interacting fragments. This method embeds each fragment in the mean field of others and applies multi-reference perturbation theory to capture inter-fragment correlations such as dispersion and charge transfer efficiently. The approach reduces computational overhead and enables scalable simulations, as shown in applications to \ce{N2} dimers, aromatic dimers, and butadiene. Chapter 4 focuses on photochemical systems, where multiple electronic states must be treated equally. The state-averaged orbital-optimized variational quantum eigensolver (SAOOVQE) is extended with analytical energy gradients and non-adiabatic couplings, enabling geometry optimizations and simulations of non-adiabatic dynamics on quantum hardware. This is demonstrated by locating the conical intersection in formaldimine, highlighting SAOOVQE’s potential for studying photoisomerization in biomolecules. Building on this, Chapter 5 develops a quantum algorithm to detect conical intersections, where the Born-Oppenheimer approximation breaks down. These intersections are characterized by a discrete Berry phase (0 or
π), representing their topological nature. The algorithm extracts this phase as a single bit of information, ensuring resilience to noise. Analytical proof and numerical validation using a toy molecular model illustrate its effectiveness for studying light-perception biochemistry and related photochemical processes. Finally, Chapter 6 explores machine learning density functionals trained on noisy quantum data. While DFT is computationally efficient, its accuracy depends on approximated exchange-correlation functionals. This work proposes a neural network-based approach to learn the exact functional from quantum data, showing that training on noisy outputs from NISQ devices can mitigate sampling errors. Applications to the Fermi-Hubbard model and other systems demonstrate its potential to generalize and provide accurate results under noise. This thesis advances quantum computational chemistry by optimizing quantum resource usage, developing new embedding strategies, and expanding the scope of quantum simulations beyond ground-state properties. These contributions pave the way for practical quantum algorithms that could revolutionize molecular simulations in the near future.
Scientific simulations demand methods combining scalability with predictive accuracy. Density Functional Theory (DFT) on High-Performance Computing (HPC) enables large-scale electronic-structure simulations but is limited by approximations affecting strongly correlated systems and band-gap predictions. Quantum computing offers a pathway to address this, though current Noisy Intermediate-Scale Quantum (NISQ) hardware remains constrained by qubit resources, noise, and execution cost.
This work presents a hybrid DFT-Quantum Embedding (QDFT) framework integrating classical HPC-based DFT with a quantum electronic-structure solver. Large systems are partitioned to isolate a chemically relevant active space, treated via the Variational Quantum Eigensolver (VQE), while the remaining degrees of freedom are described by DFT. The framework incorporates active-space selection, embedded Hamiltonian construction, symmetry preservation, operator mapping, self-consistent density updating, and modular classical-quantum coupling.
We focus on noiseless quantum simulation to systematically evaluate accuracy, convergence, active-space dependence, computational cost, and HPC scalability without hardware noise. Detailed profiling identifies computational bottlenecks and highlights limitations of CPU-based quantum simulation. A QPU runtime-estimation methodology is additionally developed to assess execution requirements on actual quantum hardware.
Results demonstrate quantum embedding's potential to improve selected electronic-structure properties while retaining classical HPC's scalability. Noisy quantum simulation and QPU execution remain key future directions, providing a pathway toward practical, scalable HPC-quantum hybrid simulations as hardware matures.
We present a multilevel embedding framework for quantum chemistry calculations on a quantum computer. In our framework, a quantum algorithm treats the strongly correlated active space, while a high-level wave-function method such as coupled cluster theory or multireference perturbation theory recovers the remaining correlation in the surrounding region. A sampling-based quantum algorithm, quantum-selected configuration interaction, bridges the quantum and classical treatments. The entire calculation is embedded in a low-cost density functional theory description of the surrounding environment using Manby's projection technique. We apply the framework to organic, metal-organic, and metallic systems, computing bond dissociation energies, adsorption energies, and reaction barriers using only the subset of qubits of a 144-qubit superconducting quantum computer at the University of Osaka and achieving $\sim$1 kcal/mol agreement with classical references for a Menshutkin
SN2 reaction inside a carbon nanotube. Our results may open the way to quantitatively reliable quantum-classical hybrid calculations for large-scale chemical systems.
Hybrid quantum-classical algorithms have begun to leverage quantum devices to efficiently represent many-electron wavefunctions, enabling early demonstrations of molecular simulations on real hardware. A key prerequisite for scalable quantum chemistry, however, is size consistency: the energy of non-interacting subsystems must scale linearly with system size. While many algorithms are theoretically size-consistent, noise on quantum devices may couple nominally independent subsystems and degrade this fundamental property. Here, we systematically evaluate size consistency on quantum hardware by simulating systems composed of increasing numbers of non-interacting H
2 molecules using optimally shallow unitary circuits. We find that molecular energies remain size-consistent within chemical accuracy for an estimated 118 and 71 H
2 subsystems for one- and two-qubit unitary designs, respectively, demonstrating that current quantum devices preserve size consistency over chemically relevant system sizes and supporting the feasibility of scalable, noise-resilient simulation of strongly correlated molecules and materials.
In this work, we introduce a self-consistent scheme based on the one-body reduced density matrix ($\ensuremath{\gamma}$) formalism. A significant feature of this methodology is the utilization of an optimal unitary transformation of the Hamiltonian, determined through a self-consistently determined, unitary reflection $\mathbf{R}[\ensuremath{\gamma}]$. This enables the extraction of all reduced properties of the system from a smaller, accurately solved embedding cluster, and the systematic reconstruction of the reduced density matrix of the system. This process ensures that both extended and embedded systems satisfy the local virial-like relation, providing quantitative insight into the correspondence between the fragment in the extended system and its embedded analog. The performance and convergence of the method, as well as the N-representability of the resulting correlated density matrix, are evaluated and discussed within the context of the one-dimensional Hubbard model, which provides exact results for a comprehensive comparison.