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Quantum Science and Technology

QBioBench: benchmark of quantum machine learning for peripheral biosignals on real hardware

Marek Sokol, Jan Hejda, Petr Volf, Patrik Kutílek

Published Oct 21, 2026• 0 citations
Publisher

Abstract

Abstract Claims of quantum advantage in machine learning often rest on classical comparators that lack the same features, on simulation alone, and on unreported hardware cost. QBioBench is a benchmark of quantum machine learning on peripheral biosignals that holds quantum and classical models to the same features and reports calibration and hardware cost. It comprises three clinical tasks, 12-lead ECG diagnosis (PTB-XL), single-lead apnea detection (Apnea-ECG), and wearable stress detection, each reduced to six to eight shared dimensions. A factorial grid of projected and fidelity quantum kernels and variational classifiers is screened in noisy simulation, and the promoted configurations are evaluated in an exploratory study on an IBM Nighthawk r2 processor on the full test pools of 510 apnea minutes and 512 PTB-XL records. Every prediction is recovered from the device records, intervals resample recordings or patients, and classical baselines are trained on the same units and tested on the same executed inputs. No quantum model reaches its matched support vector machine in ROC-AUC on either primary task, and none is separably better in balanced accuracy. The angle-encoded fidelity and projected kernels reach ROC-AUC 0.697 and 0.693 on apnea, paired differences of − 0.127 and − 0.119 to the support vector machine, and both are classical by construction, since the entangling layer of the encoding cancels from the fidelity kernel and leaves closed-form local expectations in the projected kernel. A variational classifier comes closest, reaching 0.797 on apnea (difference − 0.012 , 95% interval [ − 0.052 , + 0.027 ] ), and falls to chance without its two-qubit gates. Test sets of the size that circuit budgets favor are unreliable, as random 80-minute subsets of the apnea pool give the fidelity kernel a central 95% range of ROC-AUC from 0.589 to 0.797. Readout mitigation changed ROC-AUC by at most 0.015.

DOI
10.1088/2058-9565/aeb71e

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Abstract Claims of quantum advantage in machine learning often rest on classical comparators that lack the same features, on simulation alone, and on unreported hardware cost. QBioBench is a benchmark of quantum machine learning on peripheral biosignals that holds quantum and classical models to the same features and reports calibration and hardware cost. It comprises three clinical tasks, 12-lead ECG diagnosis (PTB-XL), single-lead apnea detection (Apnea-ECG), and wearable stress detection, each reduced to six to eight shared dimensions. A factorial grid of projected and fidelity quantum kernels and variational classifiers is screened in noisy simulation, and the promoted configurations are evaluated in an exploratory study on an IBM Nighthawk r2 processor on the full test pools of 510 apnea minutes and 512 PTB-XL records. Every prediction is recovered from the device records, intervals resample recordings or patients, and classical baselines are trained on the same units and tested on the same executed inputs. No quantum model reaches its matched support vector machine in ROC-AUC on either primary task, and none is separably better in balanced accuracy. The angle-encoded fidelity and projected kernels reach ROC-AUC 0.697 and 0.693 on apnea, paired differences of − 0.127 and − 0.119 to the support vector machine, and both are classical by construction, since the entangling layer of the encoding cancels from the fidelity kernel and leaves closed-form local expectations in the projected kernel. A variational classifier comes closest, reaching 0.797 on apnea (difference − 0.012 , 95% interval [ − 0.052 , + 0.027 ] ), and falls to chance without its two-qubit gates. Test sets of the size that circuit budgets favor are unreliable, as random 80-minute subsets of the apnea pool give the fidelity kernel a central 95% range of ROC-AUC from 0.589 to 0.797. Readout mitigation changed ROC-AUC by at most 0.015.
Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive empirical study of quantum kernel support vector machines (QSVMs) across nine binary classification datasets, four quantum feature maps, three classical kernels, and multiple noise models, totalling 970 experiments with strict nested cross-validation. Our analysis spans four phases: (i) statistical significance testing, revealing that none of 29 pairwise quantum-classical comparisons reach significance at α=0.05α= 0.05α=0.05; (ii) learning curve analysis over six training fractions, showing steeper quantum slopes on six of eight datasets that nonetheless fail to close the gap to the best classical baseline; (iii) hardware validation on IBM ibm_fez (Heron r2), demonstrating kernel fidelity r≥0.976r \geq 0.976r≥0.976 across six experiments; and (iv) seed sensitivity analysis confirming reproducibility (mean CV 1.4%). A Kruskal-Wallis factorial analysis reveals that dataset choice dominates performance variance (ε2=0.73\varepsilon^2 = 0.73ε2=0.73), while kernel type accounts for only 9%. Spectral analysis offers a mechanistic explanation: current quantum feature maps produce eigenspectra that are either too flat or too concentrated, missing the intermediate profile of the best classical kernel, the radial basis function (RBF). Quantum kernel training (QKT) via kernel-target alignment yields the single competitive result -- balanced accuracy 0.968 on breast cancer -- but with ~2,000x computational overhead. Our findings provide actionable guidelines for quantum kernel research. The complete benchmark suite is publicly available to facilitate reproduction and extension.
Quantum machine learning (QML) provides a framework for benchmarking wearable biosignal classification relevant to stress detection. Motivated by the burden of stress-related conditions, this study compares three quantum classifiers with seven classical baselines using heart rate and respiration rate features as inputs under noise-free and noisy conditions. Uncertainty was quantified using Nadeau–Bengio-corrected confidence intervals and percentile bootstrap (B=1000). The variational quantum classifier (VQC) achieved an accuracy of 99.47%/97.30% (noise-free/noisy), the quantum support vector classifier (QSVC) achieved 99.90%/99.37%, and PegasosQSVC achieved 99.80%/99.70%. Additionally, under the assessed proof-of-concept conditions, statistical equivalence between the QSVC and the best-performing classical model was established at Δ=1 pp; PegasosQSVC under noise achieved equivalence at Δ=2 pp with accuracy degradation of less than 0.10 pp. The time feature was identified as the primary separability driver in a post hoc classical ablation. Tree-based models were robust on physiological features alone. The surveyed methods provide a reproducible, noise-aware benchmark for wearable physiological signal classification; however, the reported high accuracies are based on a deliberately separable proof-of-concept benchmark and do not demonstrate clinical utility or a quantum advantage.
Quantum machine learning sits at the intersection of quantum computing and artificial intelligence, seeking to exploitquantum mechanical phenomena -- superposition, entanglement, and interference -- to achieve computationaladvantages for learning tasks. This study presents a systematic evaluation of five quantum ML approaches -- variationalquantum classifiers (VQC), quantum kernel methods, quantum reservoir computing, quantum Boltzmann machines, andhybrid quantum-classical neural networks -- benchmarked against classical counterparts on both simulated quantumhardware (up to 30 qubits) and real NISQ devices (IBM Quantum, 27 qubits). Evaluations spanned four task categories:binary classification on structured datasets (6 UCI benchmarks), quantum chemistry property prediction (QM9 molecularenergies), generative modelling (learning probability distributions), and optimisation (Max-Cut on random graphs). A totalof 1,920 experiments were conducted. On classical structured datasets, no quantum method outperformed the bestclassical baseline (XGBoost or SVM) at any problem size accessible to current quantum hardware (up to 30 features),with quantum kernel methods achieving parity at 0.4 +- 0.8% accuracy difference but at 100-1000x higher computationalcost. On quantum chemistry, variational quantum eigensolvers showed a genuine advantage for small molecules (H2,LiH, BeH2): achieving chemical accuracy (1 kcal/mol) with 4-12 qubits where classical methods required exponentiallymore compute for equivalent accuracy. Noise on real NISQ devices degraded all quantum ML methods by 8.4-22.6%relative to noiseless simulation, with error mitigation recovering 42-68% of the noise-induced loss. The quantumadvantage threshold -- the problem size at which quantum methods become faster than classical for equivalent accuracy-- was estimated at 50-100 logical qubits for quantum chemistry and 200+ logical qubits for general ML tasks, placingpractical quantum ML advantage beyond current NISQ capabilities but within plausible reach of fault-tolerant devices. Apractical assessment framework mapping task type, problem structure, and available quantum hardware to expectedquantum advantage is proposed.
Cardiovascular diseases remain the leading cause of mortality globally, necessitating accurate diagnostic tools for early detection and intervention. This paper presents a comprehensive comparative and hybrid analysis of quantum and classical machine learning models for heart disease prediction using the UCI Cleveland dataset. We implement classical baseline models including Logistic Regression, Random Forest, Support Vector Machine (SVM), and XGBoost, alongside quantum models: Quantum Support Vector Machine (QSVM) with statevector fidelity kernels, Variational Quantum Classifier (VQC) with data-reuploading ansätze, and Quantum Convolutional Neural Networks (QCNN) with parametric pooling. The primary contribution is the development of a hybrid quantum classical ensemble meta-classifier that fuses predictions from all classical and quantum learners using XGBoost as a meta learner. Experiments conducted in Google Colab using Qiskit 1.2+ and Penny Lane 0.36+ demonstrate that the proposed hybrid ensemble achieves superior performance with 98.33accuracy, 100perfect AUC-ROC of 1.0, substantially outperforming standalone classical models (best: 88.33(best: 80hybrid model’s superiority. These results underscore the potential of quantum feature spaces combined with classical decision boundaries in healthcare prediction systems, and demonstrate the immediate utility of hybrid quantum-classical integration in medical diagnostics on near-term quantum hardware.
Reproducibility archive (code + manuscript) for the paper "Benchmarking Quantum Kernel Support Vector Machines Against Classical Baselines on Tabular Data: A Rigorous Empirical Study with Hardware Validation" (arXiv:2604.18837). The archive contains the full Python benchmark framework, experiment configurations, unit tests, and the compiled manuscript. Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive empirical study of quantum kernel support vector machines (QSVMs) across nine binary classification datasets, four quantum feature maps, three classical kernels, and multiple noise models, totalling 970 experiments with strict nested cross-validation. Our analysis spans four phases: (i) statistical significance testing; (ii) learning curve analysis; (iii) hardware validation on IBM ibm_fez (Heron r2); and (iv) seed sensitivity analysis. A Kruskal–Wallis factorial analysis reveals that dataset choice dominates performance variance (ε2=0.73\varepsilon^2 = 0.73ε2=0.73), while kernel type accounts for only 9%. Spectral analysis offers a mechanistic explanation: current quantum feature maps produce eigenspectra that are either too flat or too concentrated, missing the intermediate profile of the best classical kernel (RBF). The complete benchmark suite is publicly available to facilitate reproduction and extension.
Background: Breast cancer remains a leading cause of cancer-related mortality, and reliable computational decision support is increasingly viewed as a complement to expert pathological assessment rather than a replacement for it. Variational quantum classifiers (VQCs) and Quantum Support Vector Machines (QSVMs) have recently been promoted as candidate models for medical classification, yet most published comparisons rely on internal hold-out validation alone and report only a single point estimate of discrimination, omitting calibration, decision-analytic value, and explainability—three ingredients that any clinically credible model must furnish. Methods: We assembled a complete quantum–classical machine learning pipeline and evaluated it under a deliberately stringent protocol designed to expose, rather than conceal, the limitations of current Noisy Intermediate-Scale Quantum (NISQ)-era models. The analytical hypothesis was conservative and stated in advance; in light of saturated classical baselines on this benchmark, we did not anticipate a quantum advantage in raw discrimination, and we framed the study as a methodological probe rather than as a competition. Using the Wisconsin Diagnostic Breast Cancer (WDBC) dataset (n = 569) for development and an independent Wisconsin Original (WBC) cohort (n = 683) for external validation, we benchmarked five classical learners (XGBoost, LightGBM, CatBoost, RandomForest, RBF-SVM), two quantum models (an eight-qubit VQC implemented in PennyLane and a ZZ-feature-map QSVM implemented in Qiskit), and a stacked hybrid ensemble. The evaluation framework combined Optuna-driven hyperparameter optimisation, internal–external cross-validation, and external validation on the independent WBC cohort. Robustness and interpretability were then probed through circuit depth and embedding rotation ablation, depolarising noise stress tests, learning curve and feature stability analysis, decision curve analysis, and dual SHAP-based explanations covering both a direct tree-based explanation and a quantum surrogate. Reporting followed the TRIPOD + AI guideline. Results: On the internal test partition, RBF-SVM achieved the highest discrimination (AUC = 0.998), with XGBoost, LightGBM, CatBoost, the hybrid ensemble, and the VQC clustering between 0.992 and 0.996; the QSVM with a ZZ-fidelity kernel underperformed substantially (AUC = 0.727). Pairwise tests for correlated ROC curves indicated that most differences among top models were not statistically significant. On the external WBC cohort, model rankings reorganised, as RBF-SVM (AUC = 0.986, 95% CI 0.946–0.997), RandomForest (0.985, 95% CI 0.945–0.996), VQC (0.983, 95% CI 0.942–0.995), and the hybrid ensemble (0.982, 95% CI 0.941–0.995) all retained near-ceiling discrimination with extensively overlapping confidence intervals. Ablation analysis demonstrated that the choice of embedding rotation is decisive—Z-rotation embeddings collapsed VQC performance to chance levels (AUC ≈ 0.50), whereas X- and Y-rotations preserved it. Depolarising noise up to p = 0.10 had a negligible effect on the VQC, and SHAP analyses converged on worst concave points, mean concave points, and worst area as the dominant predictors across both classical and quantum models. Decision curve analysis showed positive net benefit for both classical and hybrid models across the clinically meaningful threshold range, exceeding both the treat-all and treat-none reference strategies throughout. Conclusions: In the present regime, the principal contribution of QML is not raw discrimination—modern classical learners are already at the data ceiling—but the construction of a rigorous, reproducible, externally validated, and interpretable benchmarking framework in which quantum models can be fairly compared with their classical counterparts. Because evaluation was confined to curated benchmark datasets rather than real-world clinical populations, the interpretability and net benefit findings reported here should be read as benchmark-level evidence and not as a demonstration of readiness for clinical deployment.