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World Journal of Future Technologies in Computer Science and Engineering

Quantum Blockchain for Verifiable Genome Mapping Systems

Dr. A.H Khan

Published Jun 9, 2026• 0 citations
OpenAlex

Abstract

The emergence of quantum computing threatens classical cryptographic systems, prompting the development of quantum-resistant solutions. At the same time, blockchain technology has been recognized for its capacity to provide immutable, auditable records, but existing implementations largely rely on cryptographic primitives vulnerable to quantum attacks. In genomic research, the integrity, provenance, and confidentiality of sequence data are paramount: any undetected tampering can compromise downstream analyses, misguide clinical decisions, or violate patient trust. This paper introduces Quantum Blockchain for Verifiable Genome Mapping Systems (QB-VGMS), a hybrid architecture that melds quantum key distribution (QKD)–based secure channels with a permissioned, quantum-resistant blockchain to enable end-to-end verifiability of genome mapping operations. In our design, genome fragments are hashed using SHA-3 and stored on-chain alongside metadata, while bulk sequence data resides in encrypted off-chain repositories. The consensus protocol employs QKD to distribute fresh symmetric keys among validator nodes, coupled with a quantum-random leader election to resist both classical and quantum adversaries. We describe a prototype implementation using simulated QKD links and Hyperledger Fabric extended for quantum security. Performance evaluation on human chromosome 21 datasets (48 MB total, partitioned into 1 MB fragments) demonstrates sub-one-second average transaction latency and throughput scaling up to 15 fragments per second under concurrent load. Security assessments confirm tamper-evident auditing and confidentiality against unauthorized decryption attempts. We conclude by discussing practical deployment challenges—such as QKD hardware integration, consensus scalability, and regulatory compliance—and outline pathways for integrating advanced privacy-enhancing technologies.

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The emergence of quantum computing threatens classical cryptographic systems, prompting the development of quantum-resistant solutions. At the same time, blockchain technology has been recognized for its capacity to provide immutable, auditable records, but existing implementations largely rely on cryptographic primitives vulnerable to quantum attacks. In genomic research, the integrity, provenance, and confidentiality of sequence data are paramount: any undetected tampering can compromise downstream analyses, misguide clinical decisions, or violate patient trust. This paper introduces Quantum Blockchain for Verifiable Genome Mapping Systems (QB-VGMS), a hybrid architecture that melds quantum key distribution (QKD)–based secure channels with a permissioned, quantum-resistant blockchain to enable end-to-end verifiability of genome mapping operations. In our design, genome fragments are hashed using SHA-3 and stored on-chain alongside metadata, while bulk sequence data resides in encrypted off-chain repositories. The consensus protocol employs QKD to distribute fresh symmetric keys among validator nodes, coupled with a quantum-random leader election to resist both classical and quantum adversaries. We describe a prototype implementation using simulated QKD links and Hyperledger Fabric extended for quantum security. Performance evaluation on human chromosome 21 datasets (48 MB total, partitioned into 1 MB fragments) demonstrates sub-one-second average transaction latency and throughput scaling up to 15 fragments per second under concurrent load. Security assessments confirm tamper-evident auditing and confidentiality against unauthorized decryption attempts. We conclude by discussing practical deployment challenges—such as QKD hardware integration, consensus scalability, and regulatory compliance—and outline pathways for integrating advanced privacy-enhancing technologies.
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Healthcare systems are increasingly data-driven through EHRs, telemedicine, and IoT-based medical devices. However, cyber threats, poor interoperability, and data tampering expose the vulnerabilities of centralized systems. Blockchain offers immutability and transparency, yet its traditional cryptography faces risks from quantum computing, which can compromise existing encryption. To address this, the chapter proposes a quantum-enhanced blockchain framework integrating post-quantum cryptography (PQC), quantum key distribution (QKD), and hybrid quantum-classical consensus. The model strengthens confidentiality, integrity, and availability (CIA) of healthcare data while ensuring interoperability and regulatory compliance. Key applications include secure EHR and genomic data management, automated patient consent handling, transparent drug supply chain monitoring, and protection of clinical research. The chapter also discusses ethical, technical, and regulatory challenges, offering insights into building resilient, quantum-secure healthcare ecosystems.
This paper presents a quantum-enhanced blockchain architecture addressing the dual challenges of quantum vulnerability and scalability limitations in conventional distributed ledgers. We propose a novel framework integrating three key innovations the NIST-standardized Dilithium lattice-based cryptosystem for post-quantum encryption, quantum-resistant binary data structures (1011011 sequences) for integrity verification, and sharded post-quantum key management. Our experimental results demonstrate significant improvements over classical systems, achieving 2,542 TPS throughput (2.7× increase) and reducing cryptographic latency by 67% using BB84 quantum protocols. The architecture provides comprehensive protection against Shor’s and Grover’s algorithms while maintaining blockchain’s decentralized principles through a hybrid quantum-classical consensus mechanism. Comparative analysis reveals our solution outperforms both RSA (classical) and Kyber (hybrid) in all evaluated metrics, including encryption speed (325 MB/s) and key generation time (112 ms). This work establishes a practical pathway for transitioning blockchain infrastructures to quantum-resistant paradigms without compromising performance.
Quantum computing is an evolution of classical computing, capable of solving problems that are competitive enough to break the existing cryptographic primitives upon which current blockchain systems are based. Popular schemes like RSA, ECDSA, and SHA-256 can be compromised by quantum algorithms (Shor's and Grover's), raising questions about the security and trustworthiness of blockchain-based applications in finance, healthcare, and supply chains. Many current approaches focus on isolated aspects of the blockchain, such as cryptographic primitives or key exchange, without a comprehensive strategy that can guarantee end-to-end security in the face of a quantum threat. Finally, traditional consensus mechanisms such as Proof-of-Work and Proof-of-Stake are vulnerable to Sybil attacks, centralization, and leader-selection bias. When the adversary has access to a quantum computer, these issues become significantly worse. In this paper, we present QuantumShield-BC, a modular blockchain framework incorporating post-quantum cryptographic signatures, quantum key distribution (QKD), and a novel Quantum Byzantine Fault Tolerance (Q-BFT) consensus mechanism driven by quantum random number generation (QRNG) to address these challenges. QKD: The system supports tamper-proof key exchange, quantum-resilient consensus among validator nodes, and secure transaction signing. Experimental evaluation demonstrates that QuantumShield-BC achieves low consensus latency and high throughput, while providing perfect security against simulated attacks from Shor's and Grover's algorithms. The proposed framework eradicates the Sybil attack effectiveness up to 0%, eliminates replay and MITM vulnerabilities, and achieves an average throughput of over 7,000 transactions per second with 100 validators, orders of magnitude better than classical blockchain systems. The importance of each quantum part to the system's robustness is also demonstrated using an ablation study. With its unique ability to provide a post-quantum framework for high-assurance, general-purpose, scalable, and interoperable blockchain networks resistant to quantum-inspired attacks or quantum retrieval, QuantumShield-BC is practical for deployment in critical infrastructure and digital trust ecosystems where performance and a future-proof foundation are essential.
Quantum computing's development poses a significant threat to the cryptographic security of current blockchain technologies, potentially undermining the integrity of digital transactions. Quantum computers can break the complex mathematical problems that algorithms like RSA and ECC rely on, which could lead to vulnerabilities such as double-spending and fraud. To address these risks, the blockchain community is exploring quantum-resistant protocols that employ post-quantum cryptographic algorithms, which are designed to withstand quantum computing attacks. Quantum-secure blockchain protocols integrate quantum key distribution (QKD) and post-quantum cryptography (PQC) to enhance security. QKD uses quantum mechanics principles to secure communication channels, ensuring that any attempt to intercept the key introduces detectable anomalies. PQC involves algorithms like lattice-based, hash-based, or multivariate polynomial-based algorithms that are believed to be secure against quantum attacks. These protocols aim to maintain the confidentiality, integrity, and security of data transmitted over the blockchain, ensuring the longevity and reliability of blockchain systems in the face of evolving computational advancements. A quantum-secure blockchain scheme (QSB) utilizes a consensus mechanism, QPoA, and IQS. The QPoA is leveraged for block generation while the IQS is deployed in transaction verification1. Furthermore, the integration of quantum computing with blockchain can address current limitations, such as slow transaction speeds and lack of scalability, by optimizing calculations and enabling smarter, more sophisticated smart contracts. The development and implementation of quantum-resistant blockchains are essential for future-proofing digital transactions and maintaining trust in decentralized systems
The concept of blockchain technology has transformed the digital ecosystem to allow decentralized, transparent and immutable transactions in various sectors. Its security is closely dependent on classical cryptography like ECDSA and RSA to perform digital signatures and SHA-256 to achieve consensus, which are becoming more susceptible to quantum computing. The cryptographic principles underpinning blockchain could be compromised with the emergence of the quantum algorithms of Shor and Grover, endangering the integrity of transactions, authentication and consensus protocols. This paper discusses the implications that quantum computing could have on blockchain security, analyses vulnerabilities of current cryptographic primitives and assesses post-quantum cryptographic (PQC) protocols, including lattice-based protocols, hash-based protocols, and code-based protocols. To guarantee backwards compatibility, as well as a gradual upgrade process to quantum-resistant protocols, a hybrid migration approach that involves transactions with two signatures is suggested. Experimental analysis shows that PQC integration attains reasonable performance trade-offs, that preserve verification costs, block size growth, and throughput effects within feasible limits, and that zero-loss resilience is achieved during reorganization tests. The conclusion is that blockchains with PQC support can reach post-quantum levels of security without major operation interruption, and they provide a viable roadmap to moving towards distributed ledger systems that are future-ready.