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Leveraging Qubit Loss Detection in Fault-Tolerant Quantum Algorithms

Gefen Baranes, Madelyn Cain, J. Pablo Bonilla Ataides, Dolev Bluvstein, Josiah Sinclair, Vladan Vuletić, Hengyun Zhou, Mikhail D. Lukin

Published Jan 2, 2026• 0 citations
OpenAlex

Abstract

Qubit loss errors constitute a dominant source of noise in many quantum hardware systems, particularly in neutral-atom quantum computers. We develop a theoretical framework to effectively detect and correct loss errors in logical algorithms and leverage such loss information in decoding. Considering general quantum error correction codes and logical circuits, we introduce a delayed-erasure decoder for experimentally motivated error models which leverages information from delayed loss detection to accurately correct loss errors, even when the precise moment of the error is unknown. Using this decoder, we identify strategies for detecting and correcting loss errors based on the logical circuit structure. For deep circuits prior to logical measurement, we explore methods to integrate loss detection into syndrome extraction with minimal overhead, identifying optimal strategies depending on the qubit loss fraction in the noise and hardware capabilities. In contrast, we find that many key algorithmic subroutines involve frequent gate teleportation, shortening the circuit depth before logical measurement and naturally replacing qubits with no additional experimental overhead. We simulate this setting using a toy model algorithm for small-angle synthesis and find a significant performance improvement as the loss fraction increases. These results provide a path forward for advancing large-scale fault-tolerant quantum computation in systems with loss error detection.

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Neutral-atom arrays are a leading qubit technology for large-scale, fault-tolerant quantum computing (FTQC). A dominant error source on this platform is qubit loss, which accrues with every operation and movement. The presence of loss undermines the promises of existing architectural work. Standard error correction targets stochastic Pauli errors and cannot correct loss, so most FTQC performance analyses are not directly compatible with it. Moreover, compilation and routing decisions, which strongly affect overall loss, are typically optimized against Pauli-error cost models and often remain loss-agnostic, potentially increasing exposure to the loss channel. In this work, we comprehensively model the effect of qubit loss on neutral-atom FTQC and develop a loss-tolerant transversal-gate architecture. We treat loss not as a predetermined error parameter but as a dynamic budget spent across a whole program, allowing us to control it by co-designing layout, compilation, and decoding. We target a physical implementation with no separate storage and entangling zones, eliminating the repeated SLM-AOD handoffs and long-distance shuttling that dominate loss in other layouts. We develop compiler optimizations that maximize gate parallelism while respecting the RF tone budget and AOD bandwidth constraints. Our work couples these with a loss-aware, delayed-erasure decoder and an end-to-end loss-aware magic state cultivation protocol. Overall, we improve accumulated loss per syndrome-extraction round by up to 2.15X against a zoned baseline and reduce logical error rates by over two orders of magnitude versus current architectures. Our framework also informs concrete device targets such as continuous reloading rates, AOD counts, and shuttling trajectory choices. We expect these insights to matter for system architects as neutral-atom hardware scales.

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Qubit loss errors constitute a dominant source of noise in many quantum hardware systems, particularly in neutral-atom quantum computers. We develop a theoretical framework to effectively detect and correct loss errors in logical algorithms and leverage such loss information in decoding. Considering general quantum error correction codes and logical circuits, we introduce a delayed-erasure decoder for experimentally motivated error models which leverages information from delayed loss detection to accurately correct loss errors, even when the precise moment of the error is unknown. Using this decoder, we identify strategies for detecting and correcting loss errors based on the logical circuit structure. For deep circuits prior to logical measurement, we explore methods to integrate loss detection into syndrome extraction with minimal overhead, identifying optimal strategies depending on the qubit loss fraction in the noise and hardware capabilities. In contrast, we find that many key algorithmic subroutines involve frequent gate teleportation, shortening the circuit depth before logical measurement and naturally replacing qubits with no additional experimental overhead. We simulate this setting using a toy model algorithm for small-angle synthesis and find a significant performance improvement as the loss fraction increases. These results provide a path forward for advancing large-scale fault-tolerant quantum computation in systems with loss error detection.

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New pathways to universal quantum logic in the early era of fault tolerance

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Quantum computers promise to solve computational problems that are inaccessible to classical machines. The reliable execution of large-scale quantum algorithms requires robust operations in the presence of noise. Quantum error correction addresses this challenge by encoding quantum information redundantly across several physical qubits, such that errors can be detected and corrected during a computation. However, no single error-correcting code intrinsically supports an inherently robust, fault-tolerant implementation of all gates needed for universal quantum computing. Moreover, most modern approaches to both quantum error correction and the implementation of universal logical operations on encoded qubits rely on mid-circuit measurements and feed-forward control. These types of operations are technologically demanding, often slow, and prone to high error rates, and they limit the overall success probability of quantum algorithms. In this thesis, we develop fault-tolerant protocols and circuits for quantum error correction and universal logical computation, with an emphasis on implementations compatible with current hardware systems. We first focus on fault-tolerant quantum error correction on small codes. By comparing different protocols, we identify trade-offs between compact circuit constructions and their robustness to noise. We then assess their practical performance by comparing numerical simulations of noisy circuits with experimental data. Beyond the preservation of encoded information, we study how universal logic can be implemented in a fault-tolerant manner on encoded qubits. A central approach considered in this thesis is code switching, in which logical information is transferred between two distinct error-correcting codes that support complementary sets of inherently fault-tolerant logical gates. In combination, these codes give access to a complete universal fault-tolerant logical gate set. In this thesis, we determine conditions that allow us to construct fault-tolerant protocols for code switching. We adapt these protocols to the capabilities of current hardware, thereby enabling the first experimental realization of universal fault-tolerant logic by means of code switching. However, the overall performance of these schemes is limited by slow and noisy mid-circuit measurements. To address this bottleneck, we construct a suite of measurement-free fault-tolerant universal operations that do not require any measurements during the execution of an algorithm. In this framework, error correction and logical operations are implemented coherently as part of the quantum circuit, without mid-circuit measurements or in-sequence classical control. We introduce measurement-free code-switching schemes that can be scaled to arbitrary code distances through concatenation, and which thereby provide, in principle, arbitrarily strong error suppression. We further tailor our approach to the capabilities of current trapped-ion quantum processors. New circuit constructions support the first experimental implementation of a logical quantum algorithm without mid-circuit measurements, demonstrated through Grover's search on three encoded qubits. Together, the results of this thesis expand the toolbox for early fault-tolerant quantum computation. They show how protocols for quantum error correction and universal logical gates can be designed without mid-circuit measurements with realistic hardware constraints in mind, opening new pathways towards universal quantum logic.

•Jan 1, 2026•0 citations
Qubit loss errors constitute a dominant source of noise in many quantum hardware systems, particularly in neutral-atom quantum computers. We develop a theoretical framework to effectively detect and correct loss errors in logical algorithms and leverage such loss information in decoding. Considering general quantum error correction codes and logical circuits, we introduce a delayed-erasure decoder for experimentally motivated error models which leverages information from delayed loss detection to accurately correct loss errors, even when the precise moment of the error is unknown. Using this decoder, we identify strategies for detecting and correcting loss errors based on the logical circuit structure. For deep circuits prior to logical measurement, we explore methods to integrate loss detection into syndrome extraction with minimal overhead, identifying optimal strategies depending on the qubit loss fraction in the noise and hardware capabilities. In contrast, we find that many key algorithmic subroutines involve frequent gate teleportation, shortening the circuit depth before logical measurement and naturally replacing qubits with no additional experimental overhead. We simulate this setting using a toy model algorithm for small-angle synthesis and find a significant performance improvement as the loss fraction increases. These results provide a path forward for advancing large-scale fault-tolerant quantum computation in systems with loss error detection.
Neutral-atom arrays are a leading qubit technology for large-scale, fault-tolerant quantum computing (FTQC). A dominant error source on this platform is qubit loss, which accrues with every operation and movement. The presence of loss undermines the promises of existing architectural work. Standard error correction targets stochastic Pauli errors and cannot correct loss, so most FTQC performance analyses are not directly compatible with it. Moreover, compilation and routing decisions, which strongly affect overall loss, are typically optimized against Pauli-error cost models and often remain loss-agnostic, potentially increasing exposure to the loss channel. In this work, we comprehensively model the effect of qubit loss on neutral-atom FTQC and develop a loss-tolerant transversal-gate architecture. We treat loss not as a predetermined error parameter but as a dynamic budget spent across a whole program, allowing us to control it by co-designing layout, compilation, and decoding. We target a physical implementation with no separate storage and entangling zones, eliminating the repeated SLM-AOD handoffs and long-distance shuttling that dominate loss in other layouts. We develop compiler optimizations that maximize gate parallelism while respecting the RF tone budget and AOD bandwidth constraints. Our work couples these with a loss-aware, delayed-erasure decoder and an end-to-end loss-aware magic state cultivation protocol. Overall, we improve accumulated loss per syndrome-extraction round by up to 2.15X against a zoned baseline and reduce logical error rates by over two orders of magnitude versus current architectures. Our framework also informs concrete device targets such as continuous reloading rates, AOD counts, and shuttling trajectory choices. We expect these insights to matter for system architects as neutral-atom hardware scales.
Qubit loss errors constitute a dominant source of noise in many quantum hardware systems, particularly in neutral-atom quantum computers. We develop a theoretical framework to effectively detect and correct loss errors in logical algorithms and leverage such loss information in decoding. Considering general quantum error correction codes and logical circuits, we introduce a delayed-erasure decoder for experimentally motivated error models which leverages information from delayed loss detection to accurately correct loss errors, even when the precise moment of the error is unknown. Using this decoder, we identify strategies for detecting and correcting loss errors based on the logical circuit structure. For deep circuits prior to logical measurement, we explore methods to integrate loss detection into syndrome extraction with minimal overhead, identifying optimal strategies depending on the qubit loss fraction in the noise and hardware capabilities. In contrast, we find that many key algorithmic subroutines involve frequent gate teleportation, shortening the circuit depth before logical measurement and naturally replacing qubits with no additional experimental overhead. We simulate this setting using a toy model algorithm for small-angle synthesis and find a significant performance improvement as the loss fraction increases. These results provide a path forward for advancing large-scale fault-tolerant quantum computation in systems with loss error detection.
Atom loss is a dominant error source in neutral-atom quantum processors, yet its correlated structure remains largely unexploited by existing quantum error correction decoders. We analyze the performance of the surface code equipped with teleportation-based loss-detection units for neutral-atom quantum processors subject to circuit-level, partially correlated atom loss and depolarizing noise. We introduce and implement a decoding strategy that exploits loss correlations, effectively converting the \textit{delayed} erasure channels stemming from atom loss to erasure channels. The decoder constructs a loss graph and dynamically updates loss probabilities, a procedure that is highly parallelizable and compatible with real-time operation. Compared to a decoder that assumes independent loss events, our approach achieves up to an order-of-magnitude reduction in logical error probability and increases the loss threshold from 3.2%3.2\%3.2% to 4%4\%4%. Our approach extends to experimentally relevant regimes with partially correlated loss, demonstrating robust gains beyond the idealized fully correlated setting.
Qubit loss occurs when the physical carrier of a qubit leaves the computational system without directly revealing the event's location. Such errors are a major obstacle to fault-tolerant quantum computation on platforms including photonic, neutral-atom, and trapped-ion systems. Loss locations are commonly identified using additional hardware operations such as leakage-detection units (LDUs), which introduce space-time overhead and may themselves become a source of error. We investigate whether qubit loss on stabilizer codes can instead be inferred from syndrome data obtained through standard repeated stabilizer measurements. Under a non-entangling model for gates involving a lost qubit, we derive a sufficient condition for loss detectability in general stabilizer codes. The condition is based on the emergence of anticommutation between stabilizer checks after their support on the lost qubits is removed. By using that condition, we formulate the exact loss-inference problem using the observed set of non-deterministic checks together with its maximum-likelihood formulation. We then relax the problem to the minimum set cover problem with a greedy heuristic algorithm. We evaluate the resulting inference and loss-correction protocols on the rotated surface code via circuit-level noise simulations for trapped-ion and neutral-atom platforms. On both platforms, inference-based and adaptive protocols reduce the logical error rate relative to a noisy-LDU baseline in the low-to-moderate loss-rate regime relevant to near-term hardware, while requiring fewer space-time overheads.
Qubit loss is a major source of error in quantum computation, as it invalidates the algebraic structure of the standard stabilizer formalism for quantum error-correcting codes. On the one hand, it complicates decoding; on the other hand, it introduces stochastic flicker patterns in stabilizers as a hallmark of qubit loss. Here, we develop an artificial-intelligence-enabled decoder based on a spatiotemporal Graph Neural Network (STGNN) architecture to extract spatial and temporal correlations from syndrome histories. Our decoder performs a dual-head task, simultaneously correcting standard Pauli errors and identifying the locations of qubit loss. Our decoder achieves significantly higher logical accuracy than both the traditional minimum-weight perfect matching (MWPM) algorithm and even delayed-erasure MWPM decoders that use qubit loss information from the final round as input. Our decoder can also identify more than 90% of loss locations after accumulating stabilizer measurements over the subsequent ten rounds, thereby facilitating qubit reinitialization, for instance, via the continuous loading technique on the atom array platform. For both tasks, our STGNN performs nearly identically to a modified version of AlphaQubit, but it employs a parallel input structure, giving it an advantage in inference time over modified AlphaQubit's recurrent input structure. This work provides a robust and scalable framework for correcting qubit loss errors, paving the way for more efficient fault-tolerant quantum computation.
Quantum computers promise to solve computational problems that are inaccessible to classical machines. The reliable execution of large-scale quantum algorithms requires robust operations in the presence of noise. Quantum error correction addresses this challenge by encoding quantum information redundantly across several physical qubits, such that errors can be detected and corrected during a computation. However, no single error-correcting code intrinsically supports an inherently robust, fault-tolerant implementation of all gates needed for universal quantum computing. Moreover, most modern approaches to both quantum error correction and the implementation of universal logical operations on encoded qubits rely on mid-circuit measurements and feed-forward control. These types of operations are technologically demanding, often slow, and prone to high error rates, and they limit the overall success probability of quantum algorithms. In this thesis, we develop fault-tolerant protocols and circuits for quantum error correction and universal logical computation, with an emphasis on implementations compatible with current hardware systems. We first focus on fault-tolerant quantum error correction on small codes. By comparing different protocols, we identify trade-offs between compact circuit constructions and their robustness to noise. We then assess their practical performance by comparing numerical simulations of noisy circuits with experimental data. Beyond the preservation of encoded information, we study how universal logic can be implemented in a fault-tolerant manner on encoded qubits. A central approach considered in this thesis is code switching, in which logical information is transferred between two distinct error-correcting codes that support complementary sets of inherently fault-tolerant logical gates. In combination, these codes give access to a complete universal fault-tolerant logical gate set. In this thesis, we determine conditions that allow us to construct fault-tolerant protocols for code switching. We adapt these protocols to the capabilities of current hardware, thereby enabling the first experimental realization of universal fault-tolerant logic by means of code switching. However, the overall performance of these schemes is limited by slow and noisy mid-circuit measurements. To address this bottleneck, we construct a suite of measurement-free fault-tolerant universal operations that do not require any measurements during the execution of an algorithm. In this framework, error correction and logical operations are implemented coherently as part of the quantum circuit, without mid-circuit measurements or in-sequence classical control. We introduce measurement-free code-switching schemes that can be scaled to arbitrary code distances through concatenation, and which thereby provide, in principle, arbitrarily strong error suppression. We further tailor our approach to the capabilities of current trapped-ion quantum processors. New circuit constructions support the first experimental implementation of a logical quantum algorithm without mid-circuit measurements, demonstrated through Grover's search on three encoded qubits. Together, the results of this thesis expand the toolbox for early fault-tolerant quantum computation. They show how protocols for quantum error correction and universal logical gates can be designed without mid-circuit measurements with realistic hardware constraints in mind, opening new pathways towards universal quantum logic.