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Code for "Embedding scheme for the maximum-independent-set problem on three-dimensional Rydberg-atom arrays"

Rui Mao

Published May 11, 2026• 1 citation
Publisher
DOI
10.5281/zenodo.20115820

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Rydberg atom arrays are a powerful platform for solving combinatorial optimization problems, owing to the Rydberg blockade mechanism, which imposes effective constraints on simultaneous atomic excitations. These constraints have enabled the encoding of the Maximum Independent Set (MIS) problem on unit disk graphs, where atoms interact within a fixed, globally defined blockade radius. However, this restriction limits the class of addressable problems. A natural extension is to consider disk graphs, which generalize unit disk graphs by allowing arbitrary disk radii and correspond to the intersection graphs of disks in the plane. Embedding such graphs in Rydberg systems requires moving beyond the standard, globally uniform blockade model. In this work, we introduce a local Rydberg blockade regime, which emerges when local drives are applied to different pairs of atoms involved in a potential interaction. We develop a general theoretical framework for this regime and propose two novel metrics, the correlation matrix and the maximum independence violation, to quantify the quality of the embedding. Using these metrics, we demonstrate that disk graphs can be meaningfully embedded into Rydberg atom arrays under local drive schemes, thereby expanding the landscape of quantum-addressable optimization problems. Finally, when evaluating approximate solutions of the MIS problem, characterized by near-optimal independent sets, local drive approaches exhibit significantly improved performance over global ones. These results highlight the practical advantage of local blockade engineering for approximate combinatorial optimization and open a path toward leveraging the analog capabilities of Rydberg platforms beyond conventional geometric constraints.
In the past years, many quantum algorithms have been proposed to tackle hard combinatorial problems. In particular, the maximum independent set (MIS) is a known NP-hard problem that can be naturally encoded in Rydberg atom arrays. By representing a graph with an ensemble of neutral atoms one can leverage Rydberg dynamics to naturally encode the constraints and the solution to MIS. However, the classes of graphs that can be directly mapped ``vertex-to-atom'' on standard devices with two-dimensional capabilities are currently limited to Unit-Disk graphs. In this setting, the inherent spatial locality of the graphs can be leveraged by classical polynomial-time approximation schemes (PTAS) that guarantee an $\ensuremath{\epsilon}$-approximate solution. In this work, we build upon recent progress made for using three-dimensioanl arrangements of atoms to embed more complex classes of graphs. We report experimental and theoretical results which represent important steps towards tackling combinatorial tasks on quantum computers for which no classical efficient $\ensuremath{\varepsilon}$-approximation scheme exists.
Rydberg atom quantum optimizers naturally encode the maximum independent set problem on geometric graphs. However, to solve general combinatorial optimization problems on more complex topologies, an embedding is required to overcome the limited-range native interactions. Such embeddings use gadgets, specific arrangements of atoms, which inevitably introduce ancillary atoms. Here, we show that this apparent overhead instead provides an intrinsic resource for error correction. Specifically, we demonstrate that the Parity Architecture-based Rydberg embedding naturally forms a classical error-correcting code, a principle that extends to other Rydberg blockade-based embeddings. Within superatom substructures, exact Rydberg-excitation-number constraints provide local error syndromes at no additional hardware cost and give rise to a strictly nonlinear code. To correct bit-flip errors, we introduce the precisely tailored Cluster decoder, which exploits these local constraints and the underlying gadget structure. Numerically, this approach achieves an error threshold of pth≳26%p_{\text{th}}\gtrsim26 \%pth​≳26% across different layout geometries. Experimentally, on the QuEra Aquila QPU, the Cluster decoder recovers exact optimization solutions with an average success rate of ≳8%\gtrsim8\%≳8% for systems of up to 107 atoms, even when bare hardware and standard greedy post-processing find none. A Rydberg atom array embedding is therefore not merely a hardware mapping of an optimization problem, but a co-designed architecture for quantum optimization in which embedding, computation, and error correction emerge from the same physical structure.