Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Log inSign up
Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Blog
Job Board
Q3AS

© 2026 Aqora Quantum S.A.S.

TermsPrivacyLegal Notice

Journal of Chemical Theory and Computation

Machine Learning Assisted Selective Configuration Interaction for Accurate Ground and Excited State Calculations

Bastien Casier, Maissa El Hamdi, Basile Herzog

Published Jan 31, 2026• 2 citations
Publisher

Abstract

In this work, we introduce a perturbative Selective Configuration Interaction (SCI) approach guided by a binary machine-learning classifier. The method leverages a lightweight feedforward neural network (FNN), purposefully designed for fast and efficient training. Within this framework, we show that our model attains the accuracy of the state-of-the-art SCI method CIPSI (Configuration Interaction using a Perturbative Selection done Iteratively). Across all tested configuration-space sizes, our approach reliably identifies the most important Slater determinants using a binary cross-entropy metric, achieving FCI/CASCI-level accuracy within 10 –4 Hartree for both ground and excited states. Finally, the method remains robust for strained geometries and conformational changes, successfully classifying Slater determinants across multiple points of potential energy curves and surfaces. This capability opens the door to new regression-based strategies for molecular electronic structure and the construction of machine-learning-driven potential energy surfaces.

DOI
10.1021/acs.jctc.5c01652

Related papers

Enhancing quantum-classical configuration interaction methods using a neural-network classifier

Severino Zeni, Giovanni Varutti, Jacopo Nespolo +1 more

Selected configuration interaction methods achieve near-exact electronic structure calculations by iteratively constructing compact variational spaces, but their efficiency depends critically on the heuristics used to identify important determinants. Here, we introduce a data-driven selection framework that recasts determinant importance as a binary classification task and integrates a neural-network classifier into the iterative CI workflow through an active-learning loop. At each iteration, a random subset of candidate determinants is labelled via temporary diagonalisation, and the trained classifier guides selection of the remaining configurations. We demonstrate the utility of this framework for both classical and quantum CI methods by calculating the ground-state energy of a diatomic molecule. Our method achieves result parity with traditional configuration interaction methods at substantially lower computational cost: roughly a $\times 5$ reduction in memory and per-iteration cost for the classical cHCI variant, and convergence in markedly fewer iterations for the quantum-classical cSQD variant. These results establish classifier-assisted determinant selection as a lightweight, method-agnostic tool for compressing variational spaces and accelerating both classical and hybrid quantum-classical configuration interaction algorithms.

physics.chem-phCross-listedarXiv:2606.24332•Jun 24, 2026•0 citations

Learning to Rank for Selected Configuration Interaction

Wan Nie, Songwei Liu, Yingying Yu +2 more

Accurate description of electron correlation is a central challenge in computational chemistry, with selected configuration interaction (SCI) emerging as a powerful tool to approach the full CI limit. While recent machine learning (ML) integrations have accelerated determinant selection, existing regression and classification approaches suffer from a fundamental objective-loss mismatch: they evaluate the importance of determinants in isolation without explicitly accounting for their relative importance ranking. Here, we introduce ranking configuration interaction (RCI), a novel ML-supported SCI framework that reframes determinant selection as a pairwise ranking problem. Building upon a Transformer-based architecture to capture complex, nonlocal orbital dependencies, RCI progressively optimizes the partial ordering of determinants. By doing so, RCI aligns the training objective more closely with the intrinsic ranking nature of SCI. Extensive benchmarks across both plane-wave and Gaussian basis sets, including the molecules N2, CO, H2O, NH3, and C2, demonstrate the efficiency of RCI. Compared to previously reported classification baselines, RCI consistently accelerates convergence─reducing overall computational time by 23% to over 50% depending on the system and requiring only 55% of the determinant count in representative cases such as N2 and CO. Furthermore, RCI exhibits robust performance and reaches chemical accuracy on the highly challenging iron-sulfur cluster using only 12% of the full CI space. Notably, RCI outperforms recent regression-based SCI methods by delivering a more than 15% improvement in accuracy at comparable determinant counts. RCI also demonstrates higher efficiency than heat-bath CI on the strongly correlated chromium dimer, yielding a compact and accurate wave function. This pairwise learning-to-rank model provides a lightweight and modular plugin that can be seamlessly incorporated into other supervised learning frameworks.

arXiv:2605.10348•Journal of Chemical Theory and Computation•Aug 20, 2026•0 citations

Accelerating Many-Body Quantum Chemistry via Generative Transformer-Enhanced Configuration Interaction

Bowen Kan, Honghui Shang

Quantum many-body calculations are fundamentally limited by the exponential growth of the configuration space, making accurate treatment of strongly correlated systems computationally prohibitive. Here we present the Generative Transformer Neural Network Selected Configuration Interaction (GTNN-SCI), a Transformer-based machine learning approach that generatively samples important configurations to accelerate many-body quantum chemistry calculations. By leveraging the Transformer architecture’s self-attention mechanism to capture long-range electron correlations, GTNN-SCI achieves up to 10× speedup compared to state-of-the-art neural network methods while maintaining high accuracy. We demonstrate the efficacy of GTNN-SCI by calculating correlation and binding energies for representative molecules including N 2, H 2 O, and C 2 using both Gaussian (cc-pVDZ) and plane-wave basis sets, achieving faster convergence and lower energies than previously reported neural network-based selected CI techniques. Most significantly, our generative approach identifies higher-order excitations missed by conventional coupling schemes, yielding lower variational energies than established methods including heat-bath CI. This capability enables GTNN-SCI to accurately treat the strongly correlated [Fe 2 S 2 (SCH 3 ) 4 ] 2– ([2Fe–2S]) cluster system, achieving ground-state energies within chemical accuracy of DMRG benchmarks, whereas conventional selected CI methods have failed on this system. The GTNN-SCI method thus combines modern deep learning with high-performance electronic structure computation, providing an efficient and precise avenue for solving the electronic Schrödinger equation in challenging molecular systems.

Journal of Chemical Theory and Computation•Nov 24, 2025•2 citations

QUBO–SAMPLING–DRIVEN SELECTED CONFIGURATION INTERACTION

C. M. R. Rocha

Accurate solutions to the electronic Schrödinger equation remain a central challenge in quantum chemistry due to the exponential growth of the many-electron Hilbert space. Selected configuration interaction (SCI) methods mitigate this challenge by restricting the wavefunction expansion to a subset of important determinants, but their efficiency is limited by the quality/cost of determinant selection and Hamiltonian diagonalization. In this work, we propose QUBO-SCI, a novel approach that reformulates the selection step in SCI as a quadratic unconstrained binary optimization (QUBO) problem. This formulation enables the sampling of low-energy electronic configurations as bitstrings using both quantum-inspired approaches and quantum annealing hardware. The sampled configurations are then incorporated into an iterative SCI framework using a perturbative importance criterion. We demonstrate the method on small benchmark systems, including H 2 , C 2 , H 2 O, and N 2 , showing that QUBO-SCI achieves near-FCI accuracy with a significantly reduced number of determinants. The results highlight the potential of annealing-based sampling as an efficient alternative to both conventional determinant selection strategies and circuit-based quantum SCI approaches in electronic structure calculations.

•Sep 6, 2026•0 citations

Natural-Orbital-Based Neural Network Configuration Interaction

Thirion, Louis, Yorick L. A. Schmerwitz, Max Kroesbergen +5 more

Selective configuration interaction methods approximate correlated molecular ground- and excited states by considering only the most relevant Slater determinants in the expansion. While a recently proposed neural-network-assisted approach efficiently identifies such determinants, the procedure typically relies on canonical Hartree-Fock orbitals, which are optimized only at the mean-field level. Here we assess approximate natural orbitals - eigenfunctions of the one-particle density matrix computed from intermediate many-body eigenstates - as an alternative. Across our benchmarks for H$_2$O, NH$_3$, CO, and C$_3$H$_8$ we see a consistent reduction in the required determinants for a given accuracy of the computed correlation energy compared to full configuration interaction calculations. Our results confirm that even approximate natural orbitals constitute a simple yet powerful strategy to enhance the efficiency of neural-network-assisted configuration interaction calculations.

arXiv:2510.27665•Oct 31, 2025•0 citations

Hamiltonian-Guided Autoregressive Selected-Configuration Interaction Achieves Chemical Accuracy in Strongly Correlated Systems

Hao Zhang, Xiongzhi Zeng, Zhenyu Li +1 more

High Resolution Image Download MS PowerPoint Slide Strongly correlated molecules remain out of reach for most electronic-structure solvers because the exact wave function spans a determinant space that grows exponentially with the number of orbitals. State-of-the-art selected-CI (e.g., CIPSI and HCI) and ML-CI methods mitigate search by exploiting Hamiltonian sparsity and learned prescreening. Nonetheless, in strongly multireference regimes, the excitation-based candidate lists can grow rapidly, which may increase memory and screening costs. We present the Hamiltonian-guided autoregressive selected-configuration interaction (HAAR-SCI), a learn–sample–compress workflow that runs on a single GPU. A gated Transformer samples determinants autoregressively; Gumbel Top-K noise encourages exploration, and GPU min-heap kernels keep only configurations with the largest Hamiltonian couplings. The network is retrained after each expansion, and iterations stop when successive energies differ by ≤1 mHa. Across an 18-molecule benchmark set reaching 116 spin–orbitals, HAAR-SCI attains a mean absolute error of 0.51 mHa while using much fewer determinants than heat-bath CI. It traces the entire N 2 dissociation curve within 0.67 mHa and achieves HCI accuracy for the 40-spin-orbital [Fe 2 S 2 (SCH 3 ) 4 ] 2– cluster with a determinant reduction of 72%, demonstrating its power on systems considered intractable for conventional selected-CI solvers. A final probability-mass pruning compresses typical wave functions by a further 10–50×, retaining <0.01% of the Hilbert space yet still capturing >99.9% of the correlation energy. HAAR-SCI thus offers a compact and truly scalable route to chemical-accuracy quantum chemistry on commodity hardware.

Journal of Chemical Theory and Computation•Dec 8, 2025•1 citation
In this work, we introduce a perturbative Selective Configuration Interaction (SCI) approach guided by a binary machine-learning classifier. The method leverages a lightweight feedforward neural network (FNN), purposefully designed for fast and efficient training. Within this framework, we show that our model attains the accuracy of the state-of-the-art SCI method CIPSI (Configuration Interaction using a Perturbative Selection done Iteratively). Across all tested configuration-space sizes, our approach reliably identifies the most important Slater determinants using a binary cross-entropy metric, achieving FCI/CASCI-level accuracy within 10 –4 Hartree for both ground and excited states. Finally, the method remains robust for strained geometries and conformational changes, successfully classifying Slater determinants across multiple points of potential energy curves and surfaces. This capability opens the door to new regression-based strategies for molecular electronic structure and the construction of machine-learning-driven potential energy surfaces.
Selected configuration interaction methods achieve near-exact electronic structure calculations by iteratively constructing compact variational spaces, but their efficiency depends critically on the heuristics used to identify important determinants. Here, we introduce a data-driven selection framework that recasts determinant importance as a binary classification task and integrates a neural-network classifier into the iterative CI workflow through an active-learning loop. At each iteration, a random subset of candidate determinants is labelled via temporary diagonalisation, and the trained classifier guides selection of the remaining configurations. We demonstrate the utility of this framework for both classical and quantum CI methods by calculating the ground-state energy of a diatomic molecule. Our method achieves result parity with traditional configuration interaction methods at substantially lower computational cost: roughly a ×5\times 5×5 reduction in memory and per-iteration cost for the classical cHCI variant, and convergence in markedly fewer iterations for the quantum-classical cSQD variant. These results establish classifier-assisted determinant selection as a lightweight, method-agnostic tool for compressing variational spaces and accelerating both classical and hybrid quantum-classical configuration interaction algorithms.
Accurate description of electron correlation is a central challenge in computational chemistry, with selected configuration interaction (SCI) emerging as a powerful tool to approach the full CI limit. While recent machine learning (ML) integrations have accelerated determinant selection, existing regression and classification approaches suffer from a fundamental objective-loss mismatch: they evaluate the importance of determinants in isolation without explicitly accounting for their relative importance ranking. Here, we introduce ranking configuration interaction (RCI), a novel ML-supported SCI framework that reframes determinant selection as a pairwise ranking problem. Building upon a Transformer-based architecture to capture complex, nonlocal orbital dependencies, RCI progressively optimizes the partial ordering of determinants. By doing so, RCI aligns the training objective more closely with the intrinsic ranking nature of SCI. Extensive benchmarks across both plane-wave and Gaussian basis sets, including the molecules N2, CO, H2O, NH3, and C2, demonstrate the efficiency of RCI. Compared to previously reported classification baselines, RCI consistently accelerates convergence─reducing overall computational time by 23% to over 50% depending on the system and requiring only 55% of the determinant count in representative cases such as N2 and CO. Furthermore, RCI exhibits robust performance and reaches chemical accuracy on the highly challenging iron-sulfur cluster using only 12% of the full CI space. Notably, RCI outperforms recent regression-based SCI methods by delivering a more than 15% improvement in accuracy at comparable determinant counts. RCI also demonstrates higher efficiency than heat-bath CI on the strongly correlated chromium dimer, yielding a compact and accurate wave function. This pairwise learning-to-rank model provides a lightweight and modular plugin that can be seamlessly incorporated into other supervised learning frameworks.
Quantum many-body calculations are fundamentally limited by the exponential growth of the configuration space, making accurate treatment of strongly correlated systems computationally prohibitive. Here we present the Generative Transformer Neural Network Selected Configuration Interaction (GTNN-SCI), a Transformer-based machine learning approach that generatively samples important configurations to accelerate many-body quantum chemistry calculations. By leveraging the Transformer architecture’s self-attention mechanism to capture long-range electron correlations, GTNN-SCI achieves up to 10× speedup compared to state-of-the-art neural network methods while maintaining high accuracy. We demonstrate the efficacy of GTNN-SCI by calculating correlation and binding energies for representative molecules including N 2, H 2 O, and C 2 using both Gaussian (cc-pVDZ) and plane-wave basis sets, achieving faster convergence and lower energies than previously reported neural network-based selected CI techniques. Most significantly, our generative approach identifies higher-order excitations missed by conventional coupling schemes, yielding lower variational energies than established methods including heat-bath CI. This capability enables GTNN-SCI to accurately treat the strongly correlated [Fe 2 S 2 (SCH 3 ) 4 ] 2– ([2Fe–2S]) cluster system, achieving ground-state energies within chemical accuracy of DMRG benchmarks, whereas conventional selected CI methods have failed on this system. The GTNN-SCI method thus combines modern deep learning with high-performance electronic structure computation, providing an efficient and precise avenue for solving the electronic Schrödinger equation in challenging molecular systems.
Accurate solutions to the electronic Schrödinger equation remain a central challenge in quantum chemistry due to the exponential growth of the many-electron Hilbert space. Selected configuration interaction (SCI) methods mitigate this challenge by restricting the wavefunction expansion to a subset of important determinants, but their efficiency is limited by the quality/cost of determinant selection and Hamiltonian diagonalization. In this work, we propose QUBO-SCI, a novel approach that reformulates the selection step in SCI as a quadratic unconstrained binary optimization (QUBO) problem. This formulation enables the sampling of low-energy electronic configurations as bitstrings using both quantum-inspired approaches and quantum annealing hardware. The sampled configurations are then incorporated into an iterative SCI framework using a perturbative importance criterion. We demonstrate the method on small benchmark systems, including H 2 , C 2 , H 2 O, and N 2 , showing that QUBO-SCI achieves near-FCI accuracy with a significantly reduced number of determinants. The results highlight the potential of annealing-based sampling as an efficient alternative to both conventional determinant selection strategies and circuit-based quantum SCI approaches in electronic structure calculations.
Selective configuration interaction methods approximate correlated molecular ground- and excited states by considering only the most relevant Slater determinants in the expansion. While a recently proposed neural-network-assisted approach efficiently identifies such determinants, the procedure typically relies on canonical Hartree-Fock orbitals, which are optimized only at the mean-field level. Here we assess approximate natural orbitals - eigenfunctions of the one-particle density matrix computed from intermediate many-body eigenstates - as an alternative. Across our benchmarks for H2_22​O, NH3_33​, CO, and C3_33​H8_88​ we see a consistent reduction in the required determinants for a given accuracy of the computed correlation energy compared to full configuration interaction calculations. Our results confirm that even approximate natural orbitals constitute a simple yet powerful strategy to enhance the efficiency of neural-network-assisted configuration interaction calculations.
High Resolution Image Download MS PowerPoint Slide Strongly correlated molecules remain out of reach for most electronic-structure solvers because the exact wave function spans a determinant space that grows exponentially with the number of orbitals. State-of-the-art selected-CI (e.g., CIPSI and HCI) and ML-CI methods mitigate search by exploiting Hamiltonian sparsity and learned prescreening. Nonetheless, in strongly multireference regimes, the excitation-based candidate lists can grow rapidly, which may increase memory and screening costs. We present the Hamiltonian-guided autoregressive selected-configuration interaction (HAAR-SCI), a learn–sample–compress workflow that runs on a single GPU. A gated Transformer samples determinants autoregressively; Gumbel Top-K noise encourages exploration, and GPU min-heap kernels keep only configurations with the largest Hamiltonian couplings. The network is retrained after each expansion, and iterations stop when successive energies differ by ≤1 mHa. Across an 18-molecule benchmark set reaching 116 spin–orbitals, HAAR-SCI attains a mean absolute error of 0.51 mHa while using much fewer determinants than heat-bath CI. It traces the entire N 2 dissociation curve within 0.67 mHa and achieves HCI accuracy for the 40-spin-orbital [Fe 2 S 2 (SCH 3 ) 4 ] 2– cluster with a determinant reduction of 72%, demonstrating its power on systems considered intractable for conventional selected-CI solvers. A final probability-mass pruning compresses typical wave functions by a further 10–50×, retaining <0.01% of the Hilbert space yet still capturing >99.9% of the correlation energy. HAAR-SCI thus offers a compact and truly scalable route to chemical-accuracy quantum chemistry on commodity hardware.