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Journal of Information Systems Engineering & Management

Post-Quantum Security Enhancements for WebAuthn and FIDO2 Protocols

Hirenkumar Patel

Published Jan 22, 2026• 0 citations
Publisher

Abstract

Advancements in quantum computing create substantial risks for classical cryptographic systems, particularly RSA and Elliptic-Curve Cryptography, that underpin FIDO2 and WebAuthn authentication protocols. Shor's algorithm can compromise these systems by extracting private keys from their public counterparts when sufficiently powerful quantum computers exist. Passwordless authentication has grown increasingly prevalent, with FIDO2 and WebAuthn serving as core trust elements within digital identity architectures. Quantum-enabled attackers present serious challenges to both credential security and attestation validation processes. Organizations must adopt post-quantum cryptographic methods proactively to sustain authentication integrity while maintaining existing trust structures. The harvest-now-decrypt-later paradigm presents urgent risks where malicious entities intercept and store authentication traffic for future decryption upon quantum computer maturation. FIDO2 credentials embedded within authenticators or bound to user devices maintain long lifespans, often synchronized across cloud ecosystems as passkeys, creating extended vulnerability windows. Post-quantum migration represents both cryptographic enhancement and essential lifecycle management spanning authenticators, browsers, servers, and attestation authorities. This framework proposes a crypto-agile hybrid WebAuthn architecture integrating classical and post-quantum algorithms. Embedding ML-DSA for digital signatures and ML-KEM for key encapsulation within WebAuthn registration and authentication flows enables progressive credential rotation without disrupting trust chains. The architecture aligns with CBOR Object Signing and Encryption identifiers and emerging IETF post-quantum WebAuthn specifications, ensuring standards compliance.

DOI
10.52783/jisem.v11i1s.14185

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Advancements in quantum computing create substantial risks for classical cryptographic systems, particularly RSA and Elliptic-Curve Cryptography, that underpin FIDO2 and WebAuthn authentication protocols. Shor's algorithm can compromise these systems by extracting private keys from their public counterparts when sufficiently powerful quantum computers exist. Passwordless authentication has grown increasingly prevalent, with FIDO2 and WebAuthn serving as core trust elements within digital identity architectures. Quantum-enabled attackers present serious challenges to both credential security and attestation validation processes. Organizations must adopt post-quantum cryptographic methods proactively to sustain authentication integrity while maintaining existing trust structures. The harvest-now-decrypt-later paradigm presents urgent risks where malicious entities intercept and store authentication traffic for future decryption upon quantum computer maturation. FIDO2 credentials embedded within authenticators or bound to user devices maintain long lifespans, often synchronized across cloud ecosystems as passkeys, creating extended vulnerability windows. Post-quantum migration represents both cryptographic enhancement and essential lifecycle management spanning authenticators, browsers, servers, and attestation authorities. This framework proposes a crypto-agile hybrid WebAuthn architecture integrating classical and post-quantum algorithms. Embedding ML-DSA for digital signatures and ML-KEM for key encapsulation within WebAuthn registration and authentication flows enables progressive credential rotation without disrupting trust chains. The architecture aligns with CBOR Object Signing and Encryption identifiers and emerging IETF post-quantum WebAuthn specifications, ensuring standards compliance.
Advancements in quantum computing create substantial risks for classical cryptographic systems, particularly RSA and Elliptic-Curve Cryptography, that underpin FIDO2 and WebAuthn authentication protocols. Shor's algorithm can compromise these systems by extracting private keys from their public counterparts when sufficiently powerful quantum computers exist. Passwordless authentication has grown increasingly prevalent, with FIDO2 and WebAuthn serving as core trust elements within digital identity architectures. Quantum-enabled attackers present serious challenges to both credential security and attestation validation processes. Organizations must adopt post-quantum cryptographic methods proactively to sustain authentication integrity while maintaining existing trust structures. The harvest-now-decrypt-later paradigm presents urgent risks where malicious entities intercept and store authentication traffic for future decryption upon quantum computer maturation. FIDO2 credentials embedded within authenticators or bound to user devices maintain long lifespans, often synchronized across cloud ecosystems as passkeys, creating extended vulnerability windows. Post-quantum migration represents both cryptographic enhancement and essential lifecycle management spanning authenticators, browsers, servers, and attestation authorities. This framework proposes a crypto-agile hybrid WebAuthn architecture integrating classical and post-quantum algorithms. Embedding ML-DSA for digital signatures and ML-KEM for key encapsulation within WebAuthn registration and authentication flows enables progressive credential rotation without disrupting trust chains. The architecture aligns with CBOR Object Signing and Encryption identifiers and emerging IETF post-quantum WebAuthn specifications, ensuring standards compliance.
Quantum computing poses an existential threat to classical public-key cryptography, particularly RSA and elliptic-curve systems, which form the backbone of secure communication, authentication, and digital trust. Once scalable quantum computers emerge, algorithms such as Shor’s will be capable of breaking these schemes, jeopardizing confidentiality and integrity across the internet and enterprise systems. Post-quantum cryptography (PQC) offers a viable defense, providing quantum-resistant algorithms that can be implemented on today’s hardware and protocols. Recent standardization milestones—including NIST’s approval of ML-KEM (Kyber) for key establishment, ML-DSA (Dilithium) and SLH-DSA (SPHINCS+) for signatures, and the selection of HQC as a complementary KEM—mark a turning point for practical adoption. This paper surveys the quantum threat model, algorithm families, performance trade-offs, and integration patterns such as hybrid modes and crypto-agile architectures. It further outlines a phased migration roadmap for enterprises, emphasizing harvest-now-decrypt-later risks and compliance imperatives. By bridging technical, operational, and policy perspectives, the study provides actionable guidance to prepare organizations for a secure and quantum-resilient future.
The impending arrival of viable quantum computing is a major worry to modern-day identity management systems that mainly depend on classical public-key cryptography techniques such as RSA and elliptic curve. Such systems are the basis of secure infrastructure in digital identities such as authentication, digital signature and trust models based on certificates. These cryptographic primitives can be broken using quantum algorithms like Shor and Grover, compromising the privacy of credentials and sessions stored and authenticated on digital ecosystems. The paper provides the necessity of the transition of identity management systems to post-quantum cryptographic (PQC) algorithms that will be resistant to quantum attacks. It gives a general overview of quantum-exposed identity protocols, as well as a look at the up-and-coming PQC algorithms under development, with a special call to digital signature algorithms capable of identity provision, authentication, and credential lifecycle management. Moreover, the paper isolates the problems of integration which include key size overhead, legacy system compatibility and performance trade-offs and suggests integration to take place through the use of hybrid and decentralized framework to allow a secure migration. This study will form part of a strategic plan to a post-quantum identity infrastructure, with the long term reliability, validity, and withstanding of quantum-era vulnerabilities.
Large-scale quantum computers threaten the public-key cryptography that protects enterprise data, communications, and digital identity. Shor's algorithm solves integer factorization and discrete logarithms in polynomial time, which would break RSA, Diffie-Hellman, and elliptic-curve schemes once a cryptographically relevant quantum computer exists. The danger is not only future. Adversaries can record encrypted traffic today and decrypt it later, a tactic known as harvest-now-decrypt-later. In August 2024 the U.S. National Institute of Standards and Technology published its first post-quantum standards: FIPS 203 (ML-KEM, derived from CRYSTALS-Kyber), FIPS 204 (ML-DSA, from CRYSTALS-Dilithium), and FIPS 205 (SLH-DSA, from SPHINCS+). This paper presents a practical migration framework for enterprises. It reviews the quantum threat and Mosca's inequality for timing the transition, summarizes the new standards with their key and signature sizes, and proposes a five-phase roadmap built on crypto-agility: discovery and inventory, risk prioritization, agility engineering, hybrid deployment, and validation. Performance trade-offs are analyzed using documented parameter sizes and illustrative TLS handshake figures. ML-KEM-768 carries a 1,184-byte public key against 64 bytes for an elliptic-curve key, while SPHINCS+ signatures can exceed 17 kilobytes. The work does not report a real deployment. It consolidates published parameters and field guidance into an actionable plan, and it highlights open challenges in certificate sizing, hardware support, and long-lived embedded systems.
Large-scale quantum computers threaten the public-key cryptography that protects enterprise data, communications, and digital identity. Shor's algorithm solves integer factorization and discrete logarithms in polynomial time, which would break RSA, Diffie-Hellman, and elliptic-curve schemes once a cryptographically relevant quantum computer exists. The danger is not only future. Adversaries can record encrypted traffic today and decrypt it later, a tactic known as harvest-now-decrypt-later. In August 2024 the U.S. National Institute of Standards and Technology published its first post-quantum standards: FIPS 203 (ML-KEM, derived from CRYSTALS-Kyber), FIPS 204 (ML-DSA, from CRYSTALS-Dilithium), and FIPS 205 (SLH-DSA, from SPHINCS+). This paper presents a practical migration framework for enterprises. It reviews the quantum threat and Mosca's inequality for timing the transition, summarizes the new standards with their key and signature sizes, and proposes a five-phase roadmap built on crypto-agility: discovery and inventory, risk prioritization, agility engineering, hybrid deployment, and validation. Performance trade-offs are analyzed using documented parameter sizes and illustrative TLS handshake figures. ML-KEM-768 carries a 1,184-byte public key against 64 bytes for an elliptic-curve key, while SPHINCS+ signatures can exceed 17 kilobytes. The work does not report a real deployment. It consolidates published parameters and field guidance into an actionable plan, and it highlights open challenges in certificate sizing, hardware support, and long-lived embedded systems.
The advent of cryptographically relevant quantum computers poses an existential threat to current public-key cryptographic systems (RSA, ECC) widely used in digital communication protocols such as TLS, IPsec, VPNs, and secure messaging. Traditional systems face risks from "Harvest Now, Decrypt Later" attacks, compromising long-term confidentiality of sensitive data in finance, healthcare, government, and critical infrastructure. This paper proposes Quantum Shield, a comprehensive post-quantum secure framework for next-generation digital communication. It integrates NIST-standardized post-quantum algorithms (ML-KEM for key encapsulation, ML-DSA and SLH-DSA for digital signatures) with hybrid crypto-agile designs, hardware acceleration support, and role-based access controls. The system ensures quantum-resistant key establishment, authentication, and end-to-end encryption while maintaining low latency and high throughput. Experimental evaluation on simulated network traffic demonstrates acceptable performance overhead, enhanced resistance to quantum attacks, improved traceability, and secure multi-party coordination. Quantum Shield bridges the gap between classical and quantum-safe infrastructures, fostering trust and compliance in an era of quantum threats.