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The Journal of Chemical Physics

AO-HEOM: A computational platform for non-Markovian quantum dissipative dynamics in atomic orbital spaces

Y.-B. Zhang, Yoshitaka Tanimura

Published Jan 9, 2026• 0 citations
Publisher

Abstract

Building upon our previous implementation for the hydrogen atom [Y. Zhang and Y. Tanimura, J. Chem. Phys. 163, 184108 (2025)], we have developed source code for atomic orbital-hierarchical equations of motion (AO-HEOM), a quantum mechanical framework based on HEOM formulated within an AO basis. This method enables numerically "exact" simulations of atomic systems coupled to three independent thermal baths, under both isotropic and anisotropic conditions, while preserving rotational symmetry. AO-HEOM rigorously accounts for system-bath entanglement, which is critical for describing the quantum nature of environmental interactions. Incorporating spatial bath degrees of freedom significantly increases the computational cost in the HEOM formalism because of the proliferation of electronic states at high temperatures and the inclusion of Matsubara frequency terms at low temperatures. To address this challenge, we developed a graphics processing unit-accelerated implementation. As a demonstration, we computed the emission spectra of He I and He II atoms. The source code is broadly applicable to atomic systems and enables detailed analysis of electronic transitions in thermal environments.

DOI
10.1063/5.0312209

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•Jan 1, 2013•0 citations
Building upon our previous implementation for the hydrogen atom [Y. Zhang and Y. Tanimura, J. Chem. Phys. 163, 184108 (2025)], we have developed source code for atomic orbital-hierarchical equations of motion (AO-HEOM), a quantum mechanical framework based on HEOM formulated within an AO basis. This method enables numerically "exact" simulations of atomic systems coupled to three independent thermal baths, under both isotropic and anisotropic conditions, while preserving rotational symmetry. AO-HEOM rigorously accounts for system-bath entanglement, which is critical for describing the quantum nature of environmental interactions. Incorporating spatial bath degrees of freedom significantly increases the computational cost in the HEOM formalism because of the proliferation of electronic states at high temperatures and the inclusion of Matsubara frequency terms at low temperatures. To address this challenge, we developed a graphics processing unit-accelerated implementation. As a demonstration, we computed the emission spectra of He I and He II atoms. The source code is broadly applicable to atomic systems and enables detailed analysis of electronic transitions in thermal environments.
We investigate the quantum dynamics of Coulomb potential systems in thermal baths. We study these systems within the framework of open quantum dynamics theory, focusing on preserving the rotational symmetry of the entire system, including the baths. Thus, we employ a three-dimensional rotationally invariant system-bath model to derive numerically "exact" hierarchical equations of motion for atomic orbitals that enable a non-perturbative and non-Markovian treatment of system-bath interactions at finite temperatures. To assess the formalism, we calculated the linear absorption spectrum of an atomic system under an isotropic thermal environment, with systematic variation of system-bath coupling strength and temperature.
An open quantum system refers to a system that is further coupled to a bath system consisting of surrounding radiation fields, atoms, molecules, or proteins. The bath system is typically modeled by an infinite number of harmonic oscillators. This system-bath model can describe the time-irreversible dynamics through which the system evolves toward a thermal equilibrium state at finite temperature. In nuclear magnetic resonance and atomic spectroscopy, dynamics can be studied easily by using simple quantum master equations under the assumption that the system-bath interaction is weak (perturbative approximation) and the bath fluctuations are very fast (Markovian approximation). However, such approximations cannot be applied in chemical physics and biochemical physics problems, where environmental materials are complex and strongly coupled with environments. The hierarchical equations of motion (HEOM) can describe the numerically "exact" dynamics of a reduced system under nonperturbative and non-Markovian system-bath interactions, which has been verified on the basis of exact analytical solutions (non-Markovian tests) with any desired numerical accuracy. The HEOM theory has been used to treat systems of practical interest, in particular, to account for various linear and nonlinear spectra in molecular and solid state materials, to evaluate charge and exciton transfer rates in biological systems, to simulate resonant tunneling and quantum ratchet processes in nanodevices, and to explore quantum entanglement states in quantum information theories. This article presents an overview of the HEOM theory, focusing on its theoretical background and applications, to help further the development of the study of open quantum dynamics.
A system with many energy states coupled to a harmonic oscillator bath is considered. To study quantum non-Markovian system-bath dynamics numerically rigorously and nonperturbatively, we developed a computer code for the reduced hierarchy equations of motion (HEOM) for a graphics processor unit (GPU) that can treat the system as large as 4096 energy states. The code employs a Padé spectrum decomposition (PSD) for a construction of HEOM and the exponential integrators. Dynamics of a quantum spin glass system are studied by calculating the free induction decay signal for the cases of 3 × 2 to 3 × 4 triangular lattices with antiferromagnetic interactions. We found that spins relax faster at lower temperature due to transitions through a quantum coherent state, as represented by the off-diagonal elements of the reduced density matrix, while it has been known that the spins relax slower due to suppression of thermal activation in a classical case. The decay of the spins are qualitatively similar regardless of the lattice sizes. The pathway of spin relaxation is analyzed under a sudden temperature drop condition. The Compute Unified Device Architecture (CUDA) based source code used in the present calculations is provided as Supporting Information .
Steady states play pivotal roles in many equilibrium and non-equilibrium open system studies. Their accurate evaluations call for exact theories with rigorous treatment of system-bath interactions. Therein, the hierarchical equations-of-motion (HEOM) formalism is a nonperturbative and non-Markovian quantum dissipation theory, which can faithfully describe the dissipative dynamics and nonlinear response of open systems. Nevertheless, solving the steady states of open quantum systems via HEOM is often a challenging task, due to the vast number of dynamical quantities involved. In this work, we propose a self-consistent iteration approach that quickly solves the HEOM steady states. We demonstrate its high efficiency with accurate and fast evaluations of low-temperature thermal equilibrium of a model Fenna-Matthews-Olson pigment-protein complex. Numerically exact evaluation of thermal equilibrium Rényi entropies and stationary emission line shapes is presented with detailed discussion.
In the previous paper [C. W. Kim and I. Franco, J. Chem. Phys. 160, 214111-1-214111-13 (2024)], we developed a theory called MQME-D, which allows us to decompose the overall energy dissipation process in open quantum system dynamics into contributions by individual components of the bath when the subsystem dynamics is governed by a Markovian quantum master equation (MQME). Here, we contrast the predictions of MQME-D against the numerically exact results obtained by combining hierarchical equations of motion (HEOM) with a recently reported protocol for monitoring the statistics of the bath. Overall, MQME-D accurately captures the contributions of specific bath components to the overall dissipation while greatly reducing the computational cost compared to exact computations using HEOM. The computations show that MQME-D exhibits errors originating from its inherent Markov approximation. We demonstrate that its accuracy can be significantly increased by incorporating non-Markovianity by exploiting time scale separations (TSS) in different components of the bath. Our work demonstrates that MQME-D combined with TSS can be reliably used to understand how energy is dissipated in realistic open quantum system dynamics.
The hierarchical equations of motion (HEOM) formalism developed recently is becoming an important method for investigating the properties and dynamical processes of quantum open systems. A comprehensive account on its establishment and recent development was given, covering theoretical formulations, numerical algorithm and practical applications. By construction HEOM resolves in a nonperturbative manner the combined effects of many-body interaction, system-environment coupling and non-Markovian memory. While it is mathematically equivalent to an exact path integral formalism, HEOM is also very convenient in computation and versatile in various systems of study. Moreover, it is shown recently that HEOM is actually a correlated system-environment dynamics theory. The practicality of HEOM to address physical and chemical problems was exemplified with examples relevant to quantum dissipation and quantum transport.