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Frontiers in Physics

Design and implementation of an authenticated post-quantum session protocol using ML-KEM (Kyber), ML-DSA (Dilithium), and AES-256-GCM

Akinlemi Olushola, S. P. Meenakshi

Published Jan 8, 2026• 10 citations
Publisher

Abstract

Introduction Session establishment, the process by which two parties authenticate each other and derive a shared secret key, forms the foundation for secure digital communication. Quantum computers threaten this foundation by breaking classical public-key primitives such as RSA and elliptic-curve Diffie–Hellman (ECDH), thereby enabling harvest-now–decrypt-later (HNDL) attacks that endanger long-term confidentiality. Methods This paper presents the design, implementation, and evaluation of an authenticated, quantum-resistant session protocol that replaces these vulnerable mechanisms with their post-quantum counterparts. The proposed protocol integrates ML-KEM-1024 (FIPS 203; CRYSTALS, Kyber) for ephemeral key exchange, ML-DSA-65 (FIPS 204; CRYSTALS, Dilithium) for endpoint authentication, and AES-256-GCM for symmetric protection. A transcript-bound HKDF–SHA3-256 key schedule and a 96-bit GCM nonce construction with conservative rekey limits are used to ensure forward secrecy, downgrade resistance, and message integrity. A Python/C prototype (PQClean ML-KEM-1024 with PyCryptodome AES-256-GCM) was benchmarked over 1,000 iterations on commodity hardware. Results The results show that sub-millisecond cryptographic overhead ML-KEM-1024 matches the performance of X25519 while vastly outperforming RSA-3072 in secure session establishment, and symmetric encryption remains cost effective. Nonces are unique 96-bit values, never reused across directions or beyond 2³² records, following NIST SP 800-38D; when nonce-misuse resistance is required, AES-256-GCM-SIV (RFC 8452) is supported as a drop-in alternative. Empirical tests under both local and WAN-emulated ( ≈ 40 ms RTT) network conditions confirm that the additional post-quantum cost maintains the handshake cryptographic latency in the 0.50–0.70 ms range. Discussion These results demonstrate that fully authenticated, forward-secure, quantum-resistant session negotiation is practical for real-world deployments.

DOI
10.3389/fphy.2025.1723966

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Introduction Session establishment, the process by which two parties authenticate each other and derive a shared secret key, forms the foundation for secure digital communication. Quantum computers threaten this foundation by breaking classical public-key primitives such as RSA and elliptic-curve Diffie–Hellman (ECDH), thereby enabling harvest-now–decrypt-later (HNDL) attacks that endanger long-term confidentiality. Methods This paper presents the design, implementation, and evaluation of an authenticated, quantum-resistant session protocol that replaces these vulnerable mechanisms with their post-quantum counterparts. The proposed protocol integrates ML-KEM-1024 (FIPS 203; CRYSTALS, Kyber) for ephemeral key exchange, ML-DSA-65 (FIPS 204; CRYSTALS, Dilithium) for endpoint authentication, and AES-256-GCM for symmetric protection. A transcript-bound HKDF–SHA3-256 key schedule and a 96-bit GCM nonce construction with conservative rekey limits are used to ensure forward secrecy, downgrade resistance, and message integrity. A Python/C prototype (PQClean ML-KEM-1024 with PyCryptodome AES-256-GCM) was benchmarked over 1,000 iterations on commodity hardware. Results The results show that sub-millisecond cryptographic overhead ML-KEM-1024 matches the performance of X25519 while vastly outperforming RSA-3072 in secure session establishment, and symmetric encryption remains cost effective. Nonces are unique 96-bit values, never reused across directions or beyond 2³² records, following NIST SP 800-38D; when nonce-misuse resistance is required, AES-256-GCM-SIV (RFC 8452) is supported as a drop-in alternative. Empirical tests under both local and WAN-emulated ( ≈ 40 ms RTT) network conditions confirm that the additional post-quantum cost maintains the handshake cryptographic latency in the 0.50–0.70 ms range. Discussion These results demonstrate that fully authenticated, forward-secure, quantum-resistant session negotiation is practical for real-world deployments.
The emergence of fault-tolerant quantum computing poses an existential threat to classical public-key cryptographic systems, including RSA and Elliptic Curve Cryptography (ECC), through Shor's polynomial-time factorization algorithm. The Harvest Now, Decrypt Later (HNDL) attack paradigm further amplifies this threat by enabling adversaries to archive ciphertext today for future quantum-enabled decryption, rendering long-term data confidentiality immediately at risk. While the National Institute of Standards and Technology (NIST) finalized post-quantum cryptographic standards ML-KEM (FIPS 203) and ML-DSA (FIPS 204) in August 2024, their practical integration into complete application-level communication systems remains a largely unaddressed research gap. This paper presents QuantumShield, a hybrid post-quantum secure peer-to-peer communication platform that integrates ML-KEM-768 for quantum-safe key encapsulation, ML-DSA-65 for authenticated digital signatures, and AES-256-GCM for high-throughput symmetric encryption. Our primary research contribution is a rigorous empirical analysis of PQC integration overhead in a real-world communication pipeline, quantifying latency, key size, and security trade-offs against classical RSA-2048 and ECC-256 baselines under controlled experimental conditions. Experimental evaluation across 1,000 iterations demonstrates that ML-KEM-768 encapsulation completes in 2.8 ± 0.2 ms compared to 4.1 ± 0.3 ms for ECDH key agreement — a 32% latency reduction while providing NIST Level 3 post-quantum security. The complete secure transfer pipeline processes 1 MB files in under 22 ms on commodity hardware. The system further provides interactive cryptographic visualization, adversary threat modeling, tamper detection simulation, and a hybrid migration framework demonstrating practical transition from classical to post-quantum infrastructure. QuantumShield establishes that quantum-safe communication is not merely theoretical but deployable today with negligible performance compromise.
Quantum computing poses a serious long-term risk to modern cryptographic systems, including the widely used Signal messaging protocol. This research work addresses that risk by integrating ML-KEM-768, a NIST-standardized post-quantum algorithm specified in FIPS 203, as an additional security layer within Signal Desktop. The proposed implementation applies a quantum-resistant wrapping layer to message content before encryption by Signal’s existing Double Ratchet protocol, thereby creating a hybrid cryptographic design that strengthens protection against both classical and quantum adversaries. The system uses ML-KEM-768 key encapsulation from the @noble/post-quantum library together with AES-256-GCM authenticated encryption from @noble/ciphers. This process produces 1088-byte KEM ciphertexts with 32-byte shared secrets and adds about 1104 bytes of overhead per message. Performance evaluation using two live Signal Desktop instances shows that the additional post-quantum layer introduces only modest latency. ML-KEM-768 encapsulation averages 0.67 ms, decapsulation averages 2.27 ms, and total message preparation overhead averages 13.0ms, which remains well below the 100 ms threshold commonly associated with instantaneous user interaction. Additionally, a second set of experiments evaluated image attachment encryption (100 KB, 500 KB, and 2 MB), confirming that ML-KEM-768 encapsulation cost remains constant at approximately 0.4 ms regardless of payload size while AES-256-GCM bulk encryption scales linearly, making the post-quantum overhead negligible for large media. A third stress test evaluated robustness under load, achieving 913 messages per second in burst mode with sub-millisecond wrap latency, and confirming stable performance with no degradation across sustained operation at 10 messages per second over 60 s. Overall, this work demonstrates that post-quantum cryptography can be integrated into a real messaging system in a practical manner, helping address the harvest now, decrypt later threat while preserving usability and strengthening long-term communication security.
The rise of quantum computers threatens the security of current TLS protocols, which rely on elliptic curve and RSA-based primitives that quantum algorithms like Shor's can break. This creates a “store now, decrypt later” risk, where attackers may collect encrypted data today to decrypt it in the future once quantum capabilities advance. This study introduces a novel hybrid TLS protocol that seamlessly integrates classical (ECDSA and X25519) and post-quantum (CRYSTALS-Dilithium5 and CRYSTALS-Kyber1024) primitives. The proposed method generates a composite X. 509 certificate dual-signed with ECDSA and Dilithium5. It conducts a key exchange that concatenates an X25519 Diffie-Hellman shared secret with a Kyber KEM shared secret, followed by HKDF-SHA256 key derivation. The entire protocol is implemented in Go, leveraging the OQS liboqs-go library alongside Go's standard crypto packages. Experimental validation via a proof-of-concept demonstrates successful hybrid certificate validation and secure session establishment with both classical and post-quantum peers. These results confirm that hybrid cryptographic integration can provide quantum-resilient security while preserving compatibility with existing TLS deployments.
The accelerating maturation of quantum computing technology-exemplified by IBM's Eagle, Osprey, and Condor processors surpassing 1,000+ physical qubits-represents a strategic and existential threat to the public-key cryptographic foundations of modern digital infrastructure.The mathematical intractability assumptions underlying RSA (integer factorization), Diffie-Hellman (discrete logarithm), and Elliptic Curve Cryptography (elliptic curve discrete logarithm problem) are rendered computationally negligible by Shor's polynomial-time quantum algorithm.Simultaneously, Grover's unstructured quantum search algorithm halves the effective security of all symmetric encryption schemes, requiring doubling of key lengths.The consequent "Harvest Now, Decrypt Later" (HNDL) attack paradigm-wherein encrypted communications are archived today for future quantum decryption-transforms post-quantum cryptographic migration from a future concern into an immediate operational imperative for all communications with confidentiality lifetimes exceeding five years.This paper presents a comprehensive Hybrid Post-Quantum Cryptographic (HPQC) framework that systematically integrates NIST-finalized post-quantum algorithms-CRYSTALS-Kyber (FIPS 203) for Key Encapsulation Mechanisms, CRYSTALS-Dilithium (FIPS 204) and SPHINCS+ (FIPS 205) for digital signatureswith classical cryptographic primitives (ECDH P-256/X25519, ECDSA, AES-256-GCM) in a layered, crypto-agile, formally proven, and operationally deployable security architecture.Twenty mathematical formulae are derived and presented, covering Shor/Grover complexity bounds, Module-LWE and Module-SIS hardness parameters, hybrid HKDF-SHA-512 key derivation, IND-CCA2 and EUF-CMA security reductions, forward secrecy entropy bounds, and crypto-agility rotation period calculations.Formal Theorems 1 and 2 establish the security of the hybrid KEM and hybrid signature constructions respectively.Simulated performance benchmarks across three hardware tiers (Intel Xeon server, ARM Cortex-A72 edge gateway, ARM Cortex-M4 IoT device) demonstrate 23-31% TLS 1.3 handshake latency overhead over classical baselines with full quantum resistance.Seven comparative tables and five architectural figures support the engineering-ready deployment guidance provided across 5G/6G, massive IoT, SDN, and cloud-native environments.A four-phase crypto-agile migration roadmap aligned with NIST FIPS 203/204/205, NIST SP 800-208, NSA CNSA 2.0, BSI TR-02102, and ENISA PQC guidance is presented for enterprise network operators and security architects.
The accelerating development of large-scale quantum computers poses an existential threat to the public-key cryptographic infrastructure that underpins modern digital communication. Algorithms such as RSA and Elliptic Curve Cryptography (ECC), which currently secure internet traffic, digital signatures, and data-at-rest, are vulnerable to Shor's algorithm running on a sufficiently powerful quantum processor. In response, the U.S. National Institute of Standards and Technology (NIST) finalized the first post-quantum cryptography (PQC) standards in August 2024—FIPS 203 (ML-KEM/Kyber), FIPS 204 (ML-DSA/Dilithium), and FIPS 205 (SLH-DSA/SPHINCS+)—marking the beginning of a global migration toward quantum-resistant cryptography. This paper presents a hybrid C++/Python secure storage and communication platform (source code available at https://github.com/Sujithb128989/Quantum-Safe-Backend) that implements NIST-selected PQC algorithms in a production-oriented architecture. The backend employs CRYSTALS-Dilithium5 for quantum-resistant transport authentication, Kyber for key encapsulation, and AES-256-GCM for symmetric encryption-at-rest, delivered through a dual-stack gRPC/HTTP architecture containerized with Docker. We describe the system's design rationale, detail the cryptographic pipeline from certificate generation to atomic key rotation, and discuss the engineering challenges of integrating post-quantum primitives into real-world software systems.
A sufficiently capable quantum computer would break the public-key cryptography that secures the modern internet, and data captured today can be stored until that machine arrives. This harvest-now-decrypt-later threat has pushed standards bodies to act well ahead of the hardware. In 2024 NIST published the first finished post-quantum standards: ML-KEM, derived from CRYSTALS-Kyber, for key establishment, and ML-DSA, derived from CRYSTALS-Dilithium, for digital signatures. This paper examines how these algorithms move into the two protocols that carry most secured traffic, TLS 1.3 and IPsec. We describe the hybrid handshake that runs a classical and a post-quantum key-encapsulation mechanism side by side, we measure the cost of the larger keys and signatures these schemes carry, and we discuss the practical friction points such as oversized certificate chains and fragmented handshake records. Benchmarks reported in the literature show that a hybrid X25519 plus Kyber-768 handshake adds only a small latency penalty on a healthy network, while Dilithium signatures inflate the certificate path enough to matter on constrained links. We close with a staged migration plan built around crypto-agility.