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IEEE International Conference on Quantum Computing and Engineering (QCE)

Quantum PCA on Classical Datasets: Fidelity Benchmarks and Downstream Task Performance

Zain Magdon-Ismail, Thilanka Munasinghe

Published Aug 30, 2025• 0 citations
Publisher

Abstract

Quantum Principal Component Analysis (QPCA) offers a theoretical exponential speedup over classical PCA, but its practical performance under realistic conditions remains underexplored. This work-in-progress research investigates QPCA's viability by implementing a Quantum Phase Estimation (QPE)based QPCA circuit using Qiskit and benchmarking it on ten well known classical datasets in the IBM Quantum simulator environment. We evaluated both the fidelity of eigenvalue and eigenvector reconstruction as well as the downstream impact of QPCA versus classical PCA on regression and classification tasks. Our results confirm that QPCA can reproduce classical eigenvalues with high precision (error$<10^{-4}$), but its eigenvector fidelity degrades in cases of near-degenerate spectra. We further observe that PCA benefits classification more consistently than regression, regardless of the implementation method. These findings establish a preliminary empirical foundation for understanding QPCA's strengths and limitations and serve as a baseline for future work incorporating hardware noise, scalable circuit design, and hybrid approaches.

DOI
10.1109/qce65121.2025.10346

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Quantum Principal Component Analysis (QPCA) offers a theoretical exponential speedup over classical PCA, but its practical performance under realistic conditions remains underexplored. This work-in-progress research investigates QPCA's viability by implementing a Quantum Phase Estimation (QPE)based QPCA circuit using Qiskit and benchmarking it on ten well known classical datasets in the IBM Quantum simulator environment. We evaluated both the fidelity of eigenvalue and eigenvector reconstruction as well as the downstream impact of QPCA versus classical PCA on regression and classification tasks. Our results confirm that QPCA can reproduce classical eigenvalues with high precision (error<10−4<10^{-4}<10−4), but its eigenvector fidelity degrades in cases of near-degenerate spectra. We further observe that PCA benefits classification more consistently than regression, regardless of the implementation method. These findings establish a preliminary empirical foundation for understanding QPCA's strengths and limitations and serve as a baseline for future work incorporating hardware noise, scalable circuit design, and hybrid approaches.
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This essential resource bridges the gap between classical data limitations and the future of computing, giving you the scalable, quantum-accelerated PCA strategies needed to conquer today’s massive, high-dimensional datasets. With the rapid growth of big data in fields such as genomics, internet traffic analysis, and social network data, traditional principal component analysis methods have reached their limits in terms of scalability and computational efficiency. This volume delves into cutting-edge advancements in principal component analysis (PCA), particularly focusing on its applications in handling high-dimensional and large-scale datasets. It also provides practical insights into how PCA can be applied to fields such as machine learning, bioinformatics, and finance. Through real-world case studies, hands-on examples, and guidance on implementing PCA using modern software tools and libraries, the book presents essential principles in quantum information theory and quantum algorithms, establishing the groundwork necessary to comprehend how quantum computing may expedite and improve PCA procedures. This work examines quantum algorithms for matrix decomposition, analyzes the computational benefits of quantum PCA compared to classical approaches, and showcases real applications in quantum machine learning, encryption, and quantum chemistry. Ultimately, this book will serve as a valuable resource for researchers, students, and professionals looking to the future of high-dimensional data analysis and how to apply efficient, scalable methods to PCA in their work.
In this article, we propose a low-complexity quantum principal component analysis (qPCA) algorithm. Similar to the state-of-the-art qPCA, it achieves dimension reduction by extracting principal components of the data matrix, rather than all components of the data matrix, to quantum registers, so that the samples of measurement required can be reduced considerably. Both our qPCA and Lin’s qPCA are based on quantum singular-value thresholding (QSVT). The key of Lin’s qPCA is to combine QSVT, and modified QSVT is to obtain the superposition of the principal components. The key of our algorithm, however, is to modify QSVT by replacing the rotation-controlled operation of QSVT with the controlled-notoperation to obtain the superposition of the principal components. As a result, this small trick makes the circuit much simpler. Particularly, the proposed qPCA requires three phase estimations, while the state-of-the-art qPCA requires five phase estimations. Since the runtime of qPCA mainly comes from phase estimations, the proposed qPCA achieves a runtime of roughly 3/5 of that of the state of the art. We simulate the proposed qPCA on the IBM quantum computing platform, and the simulation result verifies that the proposed qPCA yields the expected quantum state.