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Computer Physics Communications

TRAVOLTA: GPU acceleration and algorithmic improvements for constructing quantum optimal control fields in photo-excited systems

José M. Rodríguez-Borbón, Xian Wang, Adrián Perez Diéguez, Khaled Z. Ibrahim, Bryan M. Wong

Published Nov 22, 2023• 7 citations
Publisher

Abstract

We present an open-source software package, TRAVOLTA (Terrific Refinements to Accelerate, Validate, and Optimize Large Time-dependent Algorithms), for carrying out massively parallelized quantum optimal control calculations on GPUs. The TRAVOLTA software package is a significant overhaul of our previous NIC-CAGE algorithm and also includes algorithmic improvements to the gradient ascent procedure to enable faster convergence. We examine three different variants of GPU parallelization to assess their performance in constructing optimal control fields in a variety of quantum systems. In addition, we provide several examples with extensive benchmarks on our GPU-enhanced TRAVOLTA code to show that it generates the same results as previous CPU-based algorithms but with a speedup that is more than ten times faster. Our GPU enhancements and algorithmic improvements enable large quantum optimal control calculations that can be efficiently and routinely executed on modern multi-core computational hardware. Program Title: TRAVOLTA CPC Library link to program files: https://doi.org/10.17632/grwppm37rn.1 Licensing provisions: GNU General Public License 3 Programming language: C++ and CUDA Supplementary material: Brief review of LU decomposition and raw numerical values used to generate Fig. 6 in the main text. Nature of problem: The TRAVOLTA software package utilizes GPU accelerated routines and new algorithmic improvements to compute optimized electric fields that can drive a system from a known initial vibrational eigenstate to a specified final quantum state with a large (≈1) transition probability. Solution method: Quantum control, GPU acceleration, analytic gradients, Crank-Nicolson propagation, and gradient ascent optimization.

DOI
10.1016/j.cpc.2023.109017

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We present an open-source software package, TRAVOLTA (Terrific Refinements to Accelerate, Validate, and Optimize Large Time-dependent Algorithms), for carrying out massively parallelized quantum optimal control calculations on GPUs. The TRAVOLTA software package is a significant overhaul of our previous NIC-CAGE algorithm and also includes algorithmic improvements to the gradient ascent procedure to enable faster convergence. We examine three different variants of GPU parallelization to assess their performance in constructing optimal control fields in a variety of quantum systems. In addition, we provide several examples with extensive benchmarks on our GPU-enhanced TRAVOLTA code to show that it generates the same results as previous CPU-based algorithms but with a speedup that is more than ten times faster. Our GPU enhancements and algorithmic improvements enable large quantum optimal control calculations that can be efficiently and routinely executed on modern multi-core computational hardware. Program Title: TRAVOLTA CPC Library link to program files: https://doi.org/10.17632/grwppm37rn.1 Licensing provisions: GNU General Public License 3 Programming language: C++ and CUDA Supplementary material: Brief review of LU decomposition and raw numerical values used to generate Fig. 6 in the main text. Nature of problem: The TRAVOLTA software package utilizes GPU accelerated routines and new algorithmic improvements to compute optimized electric fields that can drive a system from a known initial vibrational eigenstate to a specified final quantum state with a large (≈1) transition probability. Solution method: Quantum control, GPU acceleration, analytic gradients, Crank-Nicolson propagation, and gradient ascent optimization.
We present an open-source software package, VAN-DAMME (Versatile Approaches to Numerically Design, Accelerate, and Manipulate Magnetic Excitations), for massively-parallelized quantum optimal control (QOC) calculations of multi-qubit systems. To enable large QOC calculations, the VAN-DAMME software package utilizes symmetry-based techniques with custom GPU-enhanced algorithms. This combined approach allows for the simultaneous computation of hundreds of matrix exponential propagators that efficiently leverage the intra-GPU parallelism found in high-performance GPUs. In addition, to maximize the computational efficiency of the VAN-DAMME code, we carried out several extensive tests on data layout, computational complexity, memory requirements, and performance. These extensive analyses allowed us to develop computationally efficient approaches for evaluating complex-valued matrix exponential propagators based on Padé approximants. To assess the computational performance of our GPU-accelerated VAN-DAMME code, we carried out QOC calculations of systems containing 10 - 15 qubits, which showed that our GPU implementation is 18.4× faster than the corresponding CPU implementation. Our GPU-accelerated enhancements allow efficient calculations of multi-qubit systems, which can be used for the efficient implementation of QOC applications across multiple domains. Program summary Program Title: VAN-DAMME CPC Library link to program files:: https://doi.org/10.17632/zcgw2n5bjf.1 Licensing provisions: GNU General Public License 3 Programming language: C++ and CUDA Nature of problem: The VAN-DAMME software package utilizes GPU-accelerated routines and new algorithmic improvements to compute optimized time-dependent magnetic fields that can drive a system from a known initial qubit configuration to a specified target state with a large (≈1) transition probability . Solution method: Quantum control , GPU acceleration, analytic gradients, matrix exponential, and gradient ascent optimization.
Graphical Processing Units (GPUs) are highly parallel, programmable accelerators boasting high peak floating point performance. Over the last couple of years the use of GPUs for general purpose computing have revolutionized quantum chemistry. The computational bottleneck in an ab-initio quantum method is the calculation of a large number of twoelectron integrals. To date, a number of GPU accelerated two-electron integral implementations have been developed significantly improving the performance of a static quantum mechanical (QM) calculation. However, when performing an ab-initio QM gradient calculation, optimization, QM or Hybrid Quantum Mechanical/Molecular Mechanical (QM/MM) dynamics simulation the twoelectron integral derivatives arise as an additional bottleneck. Hybrid QM/MM methods particularly dynamics methods are commonly used to study large chemical/biological systems. These methods are a popular choice used for studying reaction mechanisms, conformational and configurational structures important in glycobiology. Usually a semiempirical QM method is used however, these have shown variable accuracy for the study of carbohydrate conformation and prevents an analytical investigation of electronic structure. The use of a higher level of theory, such as an ab initio method, is desirable however this comes at a much greater computational cost. Together with the bottlenecks above this cost results from the polarization of the QM region within an electrostatic embedding scheme, which requires the calculation of a large number of one-electron integral derivatives. Thus for QM/MM calculations the one-electron integral derivatives becomes a third bottleneck together with the two mentioned above. Recently, the above bottlenecks have become popular GPU acceleration targets. This thesis describes an extension of the GPU based Quantum Supercharger Library (QSL) to perform the above calculations/simulations. In contrast to GPU packages developed from the ground up, the QSL is a library of routines aimed at accelerating legacy codes, such as GAMESS-UK, GAMESS-US and NWChem, used in electronic structure calculations. Algorithms are presented for accelerating the one- and two-electron integral derivatives on a GPU. In addition to the derivatives, the one-electron integral calculation was ported to the GPU in order to remove a small additional cost arising for large QM/MM systems. Furthermore, the use of automatic code generation for generating GPU kernels was explored and compared to the original approach. Using the QSL library implemented in GAMESS-UK several benchmark calculations and simulations were performed. These were performed in double precision on a single GPU (Kepler K20) and compared to a single CPU using the 6-31G basis set. A speedup of up to 9.3X is achieved for an ab initio gradient calculation compared to the CPU running an optimized serial version of GAMESS-UK using the Schlegel method. For a single point QM/MM calculation of cellobiose in different sized water spheres (3267-24843 point charges) speedups of between 13X and 34X is achieved. QSL/GAMESS-UK coupled to the CHARMM molecular dynamics package was then used in order to perform accelerated molecular dynamics simulations. Benchmark QM and QM/MM molecular dynamics simulations were performed on cellobiose in vacuo and in a water sphere (45 QM atoms and 24843 point charges respectively). The QSL is able to perform 9.7 ps/day of ab initio QM dynamics and 6.4 ps/day of QM/MM dynamics. Testing of the auto-generated version of the QSL showed better performance for lower angular momentum classes but reduced performance for higher angular momentum classes. The efficiency of the integral and derivative routines within the QSL library was tested on a computationally intense realistic glycobiological condensed phase free energy computation. Ab-initio pucker free energy surfaces/volumes of !-Ribofuranose and !-Glucopyranose in vacuum and in water were computed. These are the first converged Hartree-Fock/MM free energy simulations for these carbohydrates performed in solution. The value of the ab initio Free energy surfaces/volumes was demonstrated through an analysis of solvent polarization effects that are evident through a comparison of the vacuum and solution minimum free energy pathways. In particular the water structure around the pucker conformers, analysis of the primary alcohol distribution as well as analysis of the electronic structure of these conformers reveals that water significantly affects the free energy pathways, primary alcohol distribution and the barriers for inter-conversion between pucker conformers.
We present a GPU-accelerated software package for the evaluation of analytic two-electron energy and gradient contributions in Hartree-Fock (HF) and Density Functional theory (DFT) calculations. The implementation is provided as a Python library with a C++ backend, enabling straightforward integration into modern computational chemistry and drug-discovery workflows. The code supports single-point energy and nuclear gradient evaluations on both single- and multi-GPU systems, and employs MPI-based parallelization with dynamic load balancing in multi-node environments. We report comprehensive benchmarks demonstrating favorable scaling with respect to system size, as well as high throughput for batched evaluations relevant to molecular dynamics, geometry optimization, and large-scale virtual screening. Parallel execution of a single system was carried out on up to 24 A100 GPUs. The implementation builds on optimized GPU-enabled variants of the LibintX and GauXC libraries to efficiently compute density-fitted Coulomb, semi-numerical exchange, and exchange--correlation contributions.
We present a GPU-accelerated software package for the evaluation of analytic two-electron energy and gradient contributions in Hartree-Fock (HF) and Density Functional theory (DFT) calculations. The implementation is provided as a Python library with a C++ backend, enabling straightforward integration into modern computational chemistry and drug-discovery workflows. The code supports single-point energy and nuclear gradient evaluations on both single- and multi-GPU systems, and employs MPI-based parallelization with dynamic load balancing in multi-node environments. We report comprehensive benchmarks demonstrating favorable scaling with respect to system size, as well as high throughput for batched evaluations relevant to molecular dynamics, geometry optimization, and large-scale virtual screening. Parallel execution of a single system was carried out on up to 24 A100 GPUs. The implementation builds on optimized GPU-enabled variants of the LibintX and GauXC libraries to efficiently compute density-fitted Coulomb, semi-numerical exchange, and exchange--correlation contributions.
The Quantum Approximate Optimization Algorithm (QAOA) is a prominent quantum algorithm designed to find approximate solutions to combinatorial optimization problems, which are challenging for classical computers. In the current era, where quantum hardware is constrained by noise and limited qubit availability, simulating the QAOA remains essential for research. However, existing state-of-the-art simulation frame-works suffer from long execution times or lack comprehensive functionality, usability, and versatility, often requiring users to implement essential features themselves. Additionally, these frameworks are primarily restricted to Python, limiting their use in safer and faster languages like Rust, which offer, e.g., advanced parallelization capabilities. In this paper, we develop a GPU accelerated QAOA simulation framework utilizing the NVIDIA CUDA toolkit. This framework offers a complete interface for QAOA simulations, enabling the calculation of (exact) expectation values, direct access to the statevector, fast sampling, and high-performance optimization methods using an advanced state-of-the-art gradient calculation technique. The framework is designed for use in Python and Rust, providing flexibility for integration into a wide range of applications, including those requiring fast algorithm implementations leveraging QAOA at its core. The new framework's performance is rigorously benchmarked on the MaxCut problem and compared against the current state-of-the-art general-purpose quantum circuit simulation frameworks Qiskit and Pennylane as well as the specialized QAOA simulation tool QOKit. Our evaluation shows that our approach outperforms the existing state-of-the-art solutions in terms of runtime up to multiple orders of magnitude. Our implementation is publicly available at https://github.com/JFLXB/cuaoa and Zenodo [1].
GPU-accelerated quantum chemistry programs can dramatically reduce the time required for electronic structure calculations, yet most existing implementations either retrofit GPU kernels onto legacy CPU codebases or optimize individual kernels without addressing workflow-level integration overhead. We present GANSU (GPU Accelerated Numerical Simulation Utility), an open-source quantum chemistry framework written entirely in CUDA/C++ that integrates GPU-accelerated kernels for electron repulsion integrals, Fock matrix construction, and post-Hartree–Fock (post-HF) methods into a unified, GPU-resident execution pipeline. The key design principle is to eliminate host–device data transfers between computational stages by keeping all intermediate data, including density matrices, integral buffers, and Fock matrix replicas, on the GPU throughout the self-consistent field (SCF) iteration, combined with runtime-selectable integral strategies (stored ERI, resolution-of-the-identity, and Direct-SCF) that adapt to system size and available memory. On an NVIDIA H200 GPU, GANSU achieves end-to-end speedups of up to 52× over PySCF for SCF, 45× for MP2 on molecules with up to 470 basis functions, and 44× for FCI, while outperforming GPU4PySCF by up to 34× for FCI, across a range of molecular systems with up to 650 basis functions. The framework further provides analytical energy gradients and geometry optimization with nine algorithms, all operating within the same GPU-resident data flow. These results demonstrate that workflow-aware kernel integration, not just kernel-level optimization, is essential for realizing the full potential of GPU acceleration in scientific computing. GANSU is publicly available under the BSD-3-Clause license.