We discuss the Bohmian mechanics by means of the deformed Schrödinger equation for position dependent mass, in the context of a
q-algebra inspired by nonextensive statistics. A deduction of the Bohmian quantum formalism is performed by means of a deformed Fisher information functional, from which a deformed Cramér-Rao bound is derived. Lagrangian and Hamiltonian formulations, inherited by the
q-algebra, are also developed. Then, we illustrate the results with a particle confined in an infinite square potential well. The preservation of the deformed Cramér-Rao bound for the stationary states shows the role played by the
q-algebraic structure.