This paper is our attempt on the basis of physical theory to bring more clarification on the question ``What is life?'' formulated in the well-known book of Schr\"odinger in 1944. According to Schr\"odinger, the main distinguishing feature of biosystem's functioning is the ability to preserve its order structure or, in the mathematical terms, to prevent increasing of entropy. Since any biosystem is fundamentally open, it is natural to use open system's theory. However, Schr\"odinger's analysis shows that the classical theory is not able to adequately describe the order-stability in a biosystem. Schr\"odinger should also appeal to the ambiguous notion of negative entropy. We suggest to apply the quantum theory. As is well-known, behaviour of the quantum von Neumann entropy crucially differs from behaviour of the classical entropy. We consider a complex biosystem $S$ composed of many subsystems, say proteins, or cells, or neural networks in the brain, i.e., $S=(S_i).$ We study the following problem: if the composed system $S$ can preserve the ``global order'' in the situation of increase of local disorder and if $S$ can preserve its entropy while some of $S_i$ increase their entropies We show that within quantum information theory the answer is positive. The significant role plays entanglement of the subsystems states. In the absence of entanglement, increasing of local disorder generates disorder increasing in the compound system $S$ (as in the classical regime).
This paper is our attempt on the basis of physical theory to bring more clarification on the question What is life?'' formulated in the well-known book of Schr\"odinger in 1944. According to Schr\"odinger, the main distinguishing feature of biosystem's functioning is the ability to preserve its order structure or, in the mathematical terms, to prevent increasing of entropy. Since any biosystem is fundamentally open, it is natural to use open system's theory. However, Schr\"odinger's analysis shows that the classical theory is not able to adequately describe the order-stability in a biosystem. Schr\"odinger should also appeal to the ambiguous notion of negative entropy. We suggest to apply the quantum theory. As is well-known, behaviour of the quantum von Neumann entropy crucially differs from behaviour of the classical entropy. We consider a complex biosystem $S$ composed of many subsystems, say proteins, or cells, or neural networks in the brain, i.e., $S=(S_i).$ We study the following problem: if the composed system $S$ can preserve the global order'' in the situation of increase of local disorder and if S can preserve its entropy while some of Si increase their entropies We show that within quantum information theory the answer is positive. The significant role plays entanglement of the subsystems states. In the absence of entanglement, increasing of local disorder generates disorder increasing in the compound system S (as in the classical regime).
This paper is our attempt on the basis of physical theory to bring more clarification on the question ``What is life?'' formulated in the well-known book of Schr\"odinger in 1944. According to Schr\"odinger, the main distinguishing feature of biosystem's functioning is the ability to preserve its order structure or, in the mathematical terms, to prevent increasing of entropy. Since any biosystem is fundamentally open, it is natural to use open system's theory. However, Schr\"odinger's analysis shows that the classical theory is not able to adequately describe the order-stability in a biosystem. Schr\"odinger should also appeal to the ambiguous notion of negative entropy. We suggest to apply the quantum theory. As is well-known, behaviour of the quantum von Neumann entropy crucially differs from behaviour of the classical entropy. We consider a complex biosystem S composed of many subsystems, say proteins, or cells, or neural networks in the brain, i.e., S=(Si). We study the following problem: if the composed system S can preserve the ``global order'' in the situation of increase of local disorder and if S can preserve its entropy while some of Si increase their entropies We show that within quantum information theory the answer is positive. The significant role plays entanglement of the subsystems states. In the absence of entanglement, increasing of local disorder generates disorder increasing in the compound system S (as in the classical regime).
This paper is our attempt, on the basis of physical theory, to bring more clarification on the question “What is life?” formulated in the well-known book of Schrödinger in 1944. According to Schrödinger, the main distinguishing feature of a biosystem’s functioning is the ability to preserve its order structure or, in mathematical terms, to prevent increasing of entropy. However, Schrödinger’s analysis shows that the classical theory is not able to adequately describe the order-stability in a biosystem. Schrödinger also appealed to the ambiguous notion of negative entropy. We apply quantum theory. As is well-known, behaviour of the quantum von Neumann entropy crucially differs from behaviour of classical entropy. We consider a complex biosystem S composed of many subsystems, say proteins, cells, or neural networks in the brain, that is, S=(Si). We study the following problem: whether the compound system S can maintain “global order” in the situation of an increase of local disorder and if S can preserve the low entropy while other Si increase their entropies (may be essentially). We show that the entropy of a system as a whole can be constant, while the entropies of its parts rising. For classical systems, this is impossible, because the entropy of S cannot be less than the entropy of its subsystem Si. And if a subsystems’s entropy increases, then a system’s entropy should also increase, by at least the same amount. However, within the quantum information theory, the answer is positive. The significant role is played by the entanglement of a subsystems’ states. In the absence of entanglement, the increasing of local disorder implies an increasing disorder in the compound system S (as in the classical regime). In this note, we proceed within a quantum-like approach to mathematical modeling of information processing by biosystems—respecting the quantum laws need not be based on genuine quantum physical processes in biosystems. Recently, such modeling found numerous applications in molecular biology, genetics, evolution theory, cognition, psychology and decision making. The quantum-like model of order stability can be applied not only in biology, but also in social science and artificial intelligence.
Recently, the quantum formalism and methodology have been used in application to the modelling of information processing in biosystems, mainly to the process of decision making and psychological behaviour (but some applications in microbiology and genetics are considered as well). Since a living system is fundamentally open (an isolated biosystem is dead), the theory of open quantum systems is the most powerful tool for life-modelling. In this paper, we turn to the famous Schrödinger’s book “What is life?” and reformulate his speculations in terms of this theory. Schrödinger pointed to order preservation as one of the main distinguishing features of biosystems. Entropy is the basic quantitative measure of order. In physical systems, entropy has the tendency to increase (Second Law of Thermodynamics for isolated classical systems and dissipation in open classical and quantum systems). Schrödinger emphasized the ability of biosystems to beat this tendency. We demonstrate that systems processing information in the quantum-like way can preserve the order-structure expressed by the quantum (von Neumann or linear) entropy. We emphasize the role of the special class of quantum dynamics and initial states generating the camel-like graphs for entropy-evolution in the process of interaction with a new environment [Formula: see text]: 1) entropy (disorder) increasing in the process of adaptation to the specific features of [Formula: see text]; 2) entropy decreasing (order increasing) resulting from adaptation; 3) the restoration of order or even its increase for limiting steady state. In the latter case the steady state entropy can be even lower than the entropy of the initial state.
Abstract Recently the quantum formalism and methodology started to be applied to modeling of information processing in biosystems, mainly to the process of decision making and psychological behavior (but some applications to microbiology and genetics are considered as well). Since a living system is fundamentally open (an isolated biosystem is dead), the theory of open quantum systems is the most powerful tool for life-modeling. In this paper, we turn to the famous Schrödinger book “What is life?” and reformulate his speculations in terms of this theory. Schrödinger pointed toorder preservation as one of the main distinguishing features of biosystems. Entropy is the basic quantitative measure of order. In physical systems, entropy has the tendency to increase (Second Law of Thermodynamics for isolated classical systems and dissipation in open classical and quantum systems). Schrödinger emphasized the ability of biosystems to beat this tendency. We demonstrate that systems processing information in the quantum-like way can preservethe order-structure expressed by the quantum (von Neumann or linear) entropy. We emphasize the role of the special class of quantum dynamics and initial states generating the camel-like graphs for entropy-evolution in the process of interaction with a new environment ℰ: 1) entropy (disorder) increasing in the process of adaptation to the specific features of ℰ; 2) entropy decreasing (order increasing) resulting from adaptation; 3) the restoration of order or even its increase for limiting steady state. In the latter case the steady state entropy can be even lower than the entropy of the initial state.
The aim of this review is to highlight the possibility of applying the mathematical formalism and methodology of quantum theory to model behavior of complex biosystems, from genomes and proteins to animals, humans, and ecological and social systems. Such models are known as quantum-like, and they should be distinguished from genuine quantum physical modeling of biological phenomena. One of the distinguishing features of quantum-like models is their applicability to macroscopic biosystems or, to be more precise, to information processing in them. Quantum-like modeling has its basis in quantum information theory, and it can be considered one of the fruits of the quantum information revolution. Since any isolated biosystem is dead, modeling of biological as well as mental processes should be based on the theory of open systems in its most general form-the theory of open quantum systems. In this review, we explain its applications to biology and cognition, especially theory of quantum instruments and the quantum master equation. We mention the possible interpretations of the basic entities of quantum-like models with special interest given to QBism, as it may be the most useful interpretation.
We present the novel approach to mathematical modeling of information processes in biosystems. It explores the mathematical formalism and methodology of quantum theory, especially quantum measurement theory. This approach is known as quantum-like and it should be distinguished from study of genuine quantum physical processes in biosystems (quantum biophysics, quantum cognition). It is based on quantum information representation of biosystem's state and modeling its dynamics in the framework of theory of open quantum systems. This paper starts with the non-physicist friendly presentation of quantum measurement theory, from the original von Neumann formulation to modern theory of quantum instruments. Then, latter is applied to model combinations of cognitive effects and gene regulation of glucose/lactose metabolism in Escherichia coli bacterium. The most general construction of quantum instruments is based on the scheme of indirect measurement, in that measurement apparatus plays the role of the environment for a biosystem. The biological essence of this scheme is illustrated by quantum formalization of Helmholtz sensation-perception theory. Then we move to open systems dynamics and consider quantum master equation, with concentrating on quantum Markov processes. In this framework, we model functioning of biological functions such as psychological functions and epigenetic mutation.