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Theoretical Physics

DNA Molecule as a Spin System and the Symmetric Top Model

Subhamoy Singha Roy

Published Jul 27, 2017• 4 citations
Publisher

Abstract

It is observed that when the conformational properties of DNA molecule are mapped onto an antiferromagnetic spin system we can realize the specific properties of the rod-like-chain (RLC) model where the analytically continued partition function corresponds to the symmetric top Hamiltonian.The relevant path integral represents a charge particle in the field of a non-quantized monopole which suggests that angular momentum is not quantized.However in a spin chain the nonquantized monopole charge appears in the renormalization group flow and corresponds to the Barry phase required by a spin ½ state in an entangled spin system.Thus avoids the RLC model crisis.

DOI
10.22606/tp.2017.23005

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It is observed that when the conformational properties of DNA molecule are mapped onto an antiferromagnetic spin system we can realize the specific properties of the rod-like-chain (RLC) model where the analytically continued partition function corresponds to the symmetric top Hamiltonian.The relevant path integral represents a charge particle in the field of a non-quantized monopole which suggests that angular momentum is not quantized.However in a spin chain the nonquantized monopole charge appears in the renormalization group flow and corresponds to the Barry phase required by a spin ½ state in an entangled spin system.Thus avoids the RLC model crisis.
We have considered here that the conformational properties of a DNA molecule can be mapped onto a Heisenberg spin system when spins are located on the axis forming an antiferromagnatic chain.This helps us to study the topological and elastic properties of a DNA molecule in terms of SU(2) gauge fields.The entanglement entropy of the spin system in a supercoil has been determined and it is pointed out that this effectively corresponds to the thermodynamic entropy.The model reproduces salient features of the Rod-Like-Chain model avoiding the "RLC model crisis".
We are here to consider the DNA molecules' spin system to consider when the antiferromagnetic spin chain is formed by the top remains’ axis. It ap-pears that the turning and twist are not two separate entities, not the one the other on the set. This formality assistances us in depicting the thermodynamic entropy as entanglement entropy, and hence the concurrence of two-set entanglement is appraised for transverse Ising model, and antiferromagnetic chain for the assess-ment is that the other methods are to obtain agreements with the excellent deal appeared to be.
We have study here the topological properties as w ell as the elastic and thermodynamical properties of DNA molecules from an analysis of an antiferromagnetic spin chain system. The topological property such as the linking number can be derived from the Chem-Simons topology associated with a quantum spin and two indistinguishable fermions are made relatively diverse earlier entanglement, through giving one qubit spin to one of them done the circularly split attractive field that plays the character of shifting the path of quantization axis. Therefore the reverberation arise and the spin must development the transformation of entangled state from symmetric to antisymmetric state finished the closed path. This spin of the attractive field efficiently corresponds near the variation in the path of the flux line. It is exposed that the entanglement of two DNA molecule place spin-echo to one of them marks the transform of Berry phase that can be exact as a analyse of entanglement photon echo technique. If we apply this technique to one spinor previously entanglement by other then the Berry phase is surrounded in the entangled state, consequential the exclusion of dynamical time. This is found to be in good agreement with the thermodynamic entropy as entanglement entropy, charge of encircle a inelastic polymer string bounded by a fine tube.
One approach to imagine spins on the axis generating an antiferomagnatic chain is described as simulating a DNA molecule as a Heisenberg spin system. In a DNA molecule, the entanglement entropy of the spin system is shown to be in good agreement with the thermodynamic entropy. At times when the impact of temperature is included during the time of quench, It is shown that denaturation corresponds to a quantum phase change triggered by a quench. The critical point is attained and When the entanglement entropy is eliminated, it equates to a critical torsonal energy. DNA loops now appear as solitonic (skyrmionic) excitations upon base pair opening.
The Berry phase, acquired by an anisotropic spin system with spin J ≥1 when it is adiabatically rotated in a closed circuit, is considered to be associated with a non-quantized Dirac monopole, and has a geometrical as well as a topological component owing to the Dirac string. Here, it is argued that the Berry phase of a spin state with J ≥1 can be associated with a quantized Dirac monopole when the corresponding spin is taken to be an entangled state of a composite system of 1/2 spins. Evidently, this avoids the contribution of the Dirac string, and the Berry phase is purely geometrical in nature.
We establish a correspondence between the electric dipole matrix elements of a polyatomic symmetric top molecule in a state with nonzero projection of the total angular momentum on the symmetry axis of the molecule and the magnetic dipole matrix elements of a magnetic dipole associated with an elemental spin FFF. It is shown that this correspondence makes it possible to perform quantum simulation of the single-particle spectrum and the dipole-dipole interactions of magnetic dipoles in a static external magnetic field B\bf{B}B with symmetric top molecules subject to a static external electric field EDC\bf{E}_{\mathrm{DC}}EDC​. We further show that no such correspondence exists for 1Σ^1\Sigma1Σ molecules in static fields, such as the alkali metal dimers. The effective spin angular momentum of the simulated magnetic dipole corresponds to the rotational angular momentum of the symmetric top molecule, and so quantum simulation of arbitrarily large integer spins is possible. Further, taking the molecule CH3_33​F as an example, we show that the characteristic dipole-dipole interaction energies of the simulated magnetic dipole are a factor of 620, 600, and 310 larger than for the highly magnetic atoms Chromium, Erbium, and Dysprosium, respectively. We present several applications of our correspondence for many-body physics, including long-range and anisotropic spin models with arbitrary integer spin SSS using symmetric top molecules in optical lattices, quantum simulation of molecular magnets, and spontaneous demagnetization of Bose-Einstein condensates due to dipole-dipole interactions. Our results are expected to be relevant as cold symmetric top molecules reach quantum degeneracy through Stark deceleration and opto-electrical cooling.