Dynamical activities within living eukaryotic cells are organized by microtubules, main structural components of the cytoskeleton and cylindrical polymers of the protein tubulin. Evidence and theoretical models suggest that states of tubulin may play the role of “bits ” in classical microtubule computational automata. The advent of quantum information devices, key roles played by quantum processes in protein dynamics, and coherent ordering in the cell cytoplasm further suggest that microtubules may function as quantum computational devices, and that mesoscopic and macroscopic quantum states are characteristic of living systems. In this paper new results from molecular dynamics simulation based on recently obtained atomic structure of tubulin are presented which provide support for classical and quantum modes of microtubule information processing. 1. Introduction: Cytoplasm
Dynamical activities within living eukaryotic cells are organized by microtubules, main structural components of the cytoskeleton and cylindrical polymers of the protein tubulin. Evidence and theoretical models suggest that states of tubulin may play the role of “bits ” in classical microtubule computational automata. The advent of quantum information devices, key roles played by quantum processes in protein dynamics, and coherent ordering in the cell cytoplasm further suggest that microtubules may function as quantum computational devices, and that mesoscopic and macroscopic quantum states are characteristic of living systems. In this paper new results from molecular dynamics simulation based on recently obtained atomic structure of tubulin are presented which provide support for classical and quantum modes of microtubule information processing. 1. Introduction: Cytoplasm
Activities in living cells are performed by protein conformational dynamics which in turn are governed by quantum mechanical van der Waals London forces in intra-protein “hydrophobic ” pockets. In assemblies of proteins with periodic lattice geometry such as cytoskeletal actin and microtubules (as well as ordered water on their surfaces), Bose-Einstein condensation, quantum coherent superposition and quantum computation with entanglement may occur as a collective effect of these forces due to metabolic coherent phonon pumping. Decoherence can be avoided through isolation/shielding by actin gelation, Debye layer screening and water/ion ordering and topological quantum error correction. As an example, quantum spin transfer through organic molecules is more efficient at higher temperatures than at absolute zero. The unitary oneness and ineffability of living systems may depend on mesoscopic/macroscopic quantum states in protoplasm.
The background of this contribution is the ongoing extended debate over quantum effects in the biology since decades. Typical examples of the quantum biology are photosynthesis, enzymatic activities, bird navigation and especially the coherent movement of microtubules. The reason for all these effects is dominantly the quantum coherence of waves. The objective of this contribution is the quantum description of the instability dynamics of microtubules at their assembly and disassembly phases during the interphase. The corresponding theoretical investigations of this article confirm the existence of quantum coherence of microtubules. Experimental results assert such vibrations of microtubules by the observation of γ-waves in the human brain generated by bundles of microtubules. Tubulin subunits and the accessory proteins are of nano size; therefore, they are modeled as field quanta in the framework of non-relativistic quantum field theory. This approach describes the dynamics of these quantum particles and their interactions, by accentuation of their different performances as coherent or incoherent waves. The achieved results strongly depend from the preconditions: whether the fluctuating forces are turned on or turned off. With the inset of fluctuations, the quantum coherence is destroyed, and only incoherent particle solutions are obeyed. Without the impact of fluctuations wave solutions dominate. Another type of wave solution are coherent wave packets which are counter-running, where their superposition can extinct or enhance them. This kind of interfering coherent solutions is applied on the polymerization of protofilaments. The calculations of this contribution demonstrate that the quantum coherence can be only observed when fluctuations are excluded. The conclusion is that that dedicated biological processes must be able to suppress the destroying influences of the local environment. In contrary to technical-based experiments, where coherence is only obtained when the fluctuations are deliberately excluded (e.g. quantum computer). Therefore, the answer why the processes of quantum biology can generate quantum coherence at least in case of microtubules is actually not answered. Kinesins in combination with microtubules are fundamental for cellular functions and morphogenesis. Recent genetic experiments uncovered their role for tumor suppression and developmental patterning. However, these findings which open exciting new areas of kinesin research are not included in this contribution, because the description of the kinesin-microtubule system is to comprehensive for one article.
Abstract Features of consciousness difficult to understand in terms of conventional neuroscience have evoked application of quantum theory, which describes the fundamental behavior of matter and energy. In this paper we propose that aspects of quantum theory (e.g. quantum coherence) and of a newly proposed physical phenomenon of quantum wave function “self-collapse” (objective reduction: OR - Penrose, 1994) are essential for consciousness, and occur in cytoskeletal microtubules and other structures within each of the brain's neurons. The particular characteristics of microtubules suitable for quantum effects include their crystal-like lattice structure, hollow inner core, organization of cell function and capacity for information processing. We envisage that conformational states of microtubule subunits (tubulins) are coupled to internal quantum events, and cooperatively interact (compute) with other tubulins. We further assume that macroscopic coherent superposition of quantum-coupled tubulin conformational states occurs throughout significant brain volumes and provides the global binding essential to consciousness. We equate the emergence of the microtubule quantum coherence with pre-conscious processing which grows (for up to 500 ms) until the mass-energy difference among the separated states of tubulins reaches a threshold related to quantum gravity. According to the arguments for OR put forth in Penrose (1994), superpositioned states each have their own space-time geometries. When the degree of coherent mass-energy difference leads to sufficient separation of space-time geometry, the system must choose and decay (reduce, collapse) to a single universe state. In this way, a transient superposition of slightly differing space-time geometries persists until an abrupt quantum → classical reduction occurs. Unlike the random, “subjective reduction” (SR, or R) of standard quantum theory caused by observation or environmental entanglement, the OR we propose in microtubules is a self-collapse and it results in particular patterns of microtubule-tubulin conformational states that regulate neuronal activities including synaptic functions. Possibilities and probabilities for post-reduction tubulin states are influenced by factors including attachments of microtubule-associated proteins (MAPs) acting as “nodes” which tune and “orchestrate” the quantum oscillations. We thus term the self-tuning OR process in microtubules “orchestrated objective reduction” (“Orch OR”), and calculate an estimate for the number of tubulins (and neurons) whose coherence for relevant time periods (e.g. 500 ms) will elicit Orch OR. In providing a connection among (1) pre-conscious to conscious transition, (2) fundamental space-time notions, (3) non-computability, and (4) binding of various (time scale and spatial) reductions into an instantaneous event (“conscious now”), we believe Orch OR in brain microtubules is the most specific and plausible model for consciousness yet proposed.
Microtubules,one of the primary components and function units in cytoskeleton system,are filled with water.Due to the interactions between the electronic dipole field of water molecules confined within microtubule and the quantized electromagnetic radiation field,the incoherent,thermal and disordered molecular movement excited the water molecules from ground state to excited state and transferred into the collective coherent radiation.Water is a kerr medium which contains non-linear effect.When propagating in it,the coherent state we concerned in this paper can evolve into quantum superposition states.
Although experimental evidence suggests the influence of quantum effects in living organisms, one of the most critical problems in quantum biology is the explanation of how those effects that take place in a microscopic level can manifest in the macroscopic world of living beings. At present, quantum decoherence associated with the wave function collapse is one of the most accepted mechanisms explaining how the classical world of living beings emerges from the quantum world. Whatever the cause of wave function collapse, there exist biological systems where a biological function arises as a result of this collapse (e.g. birds navigation, plants photosynthesis, sense of smell, etc.), as well as the opposite examples (e.g. release of energy from ATP molecules at actomyosin muscle) where a biological function takes place in a quantum coherent environment. In this paper we report the modelling and simulation of quantum coherent superposition in cytoskeletal microtubules including decoherence, thus the effect of the collapse of the microtubule coherent state wave function. Our model is based on a new class of hybrid cellular automata (QvN), capable of performing as either a quantum cellular automata (QCA) or as a classical von Neumann automata (CA). These automata are able to simulate the transition or reduction from a quantum microscopic level with superposition of several quantum states, to a macroscopic level with a single stable state. Our results illustrate the significance of quantum biology explaining the emergence of some biological functions. We believe that in the future quantum biology will have a deep effect on the design of new devices, e.g. quantum hardware, in electrical engineering.
Abstract We examine the quantum coherence properties of tubulin heterodimers arranged into the protofilaments of cytoskeletal microtubules. In the physical model proposed by the authors, the microtubule interiors are treated as high-Q quantum electrodynamics (QED) cavities that can support decoherence-resistant entangled states under physiological conditions, with decoherence times of the order of O(10−6) O ( 10 - 6 ) s. We identify strong electric dipole interactions between tubulin dimers and ordered water dipole quanta within the microtuble interior as the mechanism responsible for the extended coherence times. Classical nonlinear (pseudospin) σ σ -models describing solitonic excitations are reinterpreted as emergent quantum-coherent—or possibly pointer—states, arising from incomplete collapse of dipole-aligned quantum states. These solitons mediate dissipation-free energy transfer along microtubule filaments. We discuss logic-gate-like behaviour facilitated by microtubule-associated proteins, and outline how such structures may enable scalable, ambient-temperature quantum computation, with the fundamental unit of information storage realized as a quDit encoded in the tubulin dipole state. We further describe a process akin to “decision-making” that emerges following an external stimulus, whereby optimal, energy-loss-free signal and information transport pathways are selected across the microtubular network. Finally, we propose experimental approaches—including Rabi-splitting spectroscopy and entangled surface plasmon probes—to validate the use of biomatter as a substrate for scalable quantum computation.