An Uncertainty-Aware Adaptive Hybrid Quantum-Classical Learning Framework for Drug Discovery
A. Santhosh Nantha, M. Jayalakshmi, K. Maharajan +2 more
Quantum machine learning (QML) has attracted significant interest in drug discovery due to its potential to model complex molecular interactions and improve prediction accuracy for protein-ligand binding affinity. However, most existing hybrid quantum-classical approaches rely on static architectures that apply quantum computation uniformly across all samples, regardless of molecular complexity or prediction confidence. Such static execution strategies lead to inefficient quantum resource utilization and limit scalability on near-term noisy intermediatescale quantum (NISQ) devices. In this paper, we propose an uncertainty-aware adaptive hybrid quantum-classical learning framework for protein-ligand binding affinity prediction that treats quantum computation as a selectively invoked resource rather than a constant component of the learning pipeline. The proposed framework first employs a classical ensemble-based regression model to generate binding affinity predictions along with an associated uncertainty estimate derived from ensemble variance. This uncertainty information is then used by a decision mechanism to dynamically select between classical-only inference, shallow quantum circuit execution, or deep quantum circuit execution. By adapting the quantum circuit depth and invocation frequency to the predicted uncertainty, the framework enables decision-centric allocation of quantum resources. Experimental evaluation of binding affinity data demonstrates that the recommended adaptive framework utilizes around 76 % less quantum resources than static hybrid quantum learning methods that use fixed-depth quantum circuits for all samples. The framework also preserves decision-level functionality and a steady inference workflow. These findings highlight the effectiveness of uncertainty-guided adaptivity as a practical strategy and offer a scalable foundation for future quantum-enhanced molecular learning.method for incorporating QML into drug development pipelines while taking hardware constraints into consideration.
International Conference on Signal, Systems, and Computing for Next-Gen Automation (ICSSCNA)•May 4, 2026•0 citations