Gas-phase singly protonated organic molecules of mass 410 Da (Alexa Fluor 350) have been cooled from ambient temperature to the hundred millikelvin range by Coulomb interaction with laser-cooled barium ions. The molecules were generated by an electrospray ionization source, transferred to and stored in a radio-frequency trap together with the atomic ions. Observations are well described by molecular dynamics simulations, which are used to determine the spatial distribution and thermal energy of the molecules. In one example, an ensemble of 830 laser-cooled 138Ba+ ions cooled 200 molecular ions to less than 115 mK. The demonstrated technique should allow a large variety of protonated molecules to be sympathetically cooled, including molecules of much higher mass, such as proteins.
Gas-phase singly protonated organic molecules of mass 410 Da (Alexa Fluor 350) have been cooled from ambient temperature to the hundred millikelvin range by Coulomb interaction with laser-cooled barium ions. The molecules were generated by an electrospray ionization source, transferred to and stored in a radio-frequency trap together with the atomic ions. Observations are well described by molecular dynamics simulations, which are used to determine the spatial distribution and thermal energy of the molecules. In one example, an ensemble of 830 laser-cooled 138Ba+ ions cooled 200 molecular ions to less than 115 mK. The demonstrated technique should allow a large variety of protonated molecules to be sympathetically cooled, including molecules of much higher mass, such as proteins.
This thesis reports on experimental and theoretical studies of the sympathetic cooling of complex molecular ions demonstrating that this general method for cooling atomic and molecular ions is reliable and efficient.
For this purpose, complex molecular ions and barium ions have been confined simultaneously in a linear Paul trap. The complex molecular ions are generated in an electrospray ionization system and transferred to the trap via a 2 m long octopole ion guide. These molecular ions are pre-cooled by room temperature helium buffer gas so that they can be captured by the trap. The atomic barium ions are loaded from a barium evaporator oven and are laser-cooled by a 493 nm cooling laser and a 650 nm repumping
laser. Due to the mutual Coulomb interaction among these charged particles, the kinetic energy of the complex molecular ions can be reduced significantly.
In our experiments we have demonstrated the sympathetic cooling of various molecules (CO2, Alexa Fluor 350, glycyrrhetinic acid, cytochrome c) covering a wide mass range from a few tens to 13000 amu. In every case the molecular ions could be cooled down to millikelvin temperatures.
Photo-chemical reactions of the 138Ba+ ions in the (2P1/2) excited state with gases such as O2, CO2, or N2O, could be observed. If the initial 138Ba+ ion ensemble is cold, the produced 138BaO+ ions are cold as well, with a similar temperature as the laser-cooled barium ions (a few tens of millikelvin). The back-reaction of 138BaO+ ions with neutral CO to 138Ba+ is possible and was observed in our experiments as well.
A powerful molecular dynamics (MD) simulation program has been developed. With this program dynamic properties of ion ensembles, such as sympathetic interactions or heating effects, have been investigated and experimental results have been analyzed to obtain, for example, ion numbers and temperatures. Additionally, the feasibility of nondestructive spectroscopy via an optical dipole excitation and the lineshape of rovibrational
transitions of 1.4 and 5.1 μm have been studied.
Gas-phase multiply charged proteins have been sympathetically cooled to translational temperatures below 1K by Coulomb interaction with laser-cooled barium ions in a linear ion trap. In one case, an ensemble of 53 cytochrome c molecules (mass $\ensuremath{\simeq}12\phantom{\rule{0.3em}{0ex}}390\phantom{\rule{0.3em}{0ex}}\mathrm{amu}$, charge +17e) was cooled by $\ensuremath{\simeq}160$ laser-cooled barium ions to less than 0.75K. Storage times of more than 20min have been observed and could easily be extended to more than an hour. The technique is applicable to a wide variety of complex molecules.
This work presents various novel results in the field of experimental and theoretical trapped ion studies. All investigations involve laser-cooled 138Ba+ ions confined in a linear quadrupole ion trap, which serve as coolant for complex molecular ions, as target for collisions with neutral atoms, or as model system in theoretical analyses. The special feature of the apparatus used in this work, is a molecular ion source based on electrospray ionization that allows for the production of gas-phase molecular ions of almost arbitrary species with a maximum mass-to-charge ratio of 2,000 Da. Trapped together with laser-cooled 138Ba+ ions, the molecular ions can be cooled down, kept cold and investigated for many minutes and in principle for up to hours in a nearly collisionless environment.
In this work, the sympathetic cooling of complex molecular ions to translational temperatures below 1 K is demonstrated for different types of molecules covering a mass range from 182 to 12,400 Da. Using the example of the protein cytochrome c, with a mass of about 12,400 Da the most massive molecular species sympathetically cooled in an ion trap so far, the methods for detection of successful trapping and cooling, and temperature determination are presented in detail. In one case, multiply protonated molecules of the protein cytochrome c have been cooled to less than 0.75 K. Furthermore, two methods for measuring photodestruction rates of cold, trapped complex molecular ions have been developed that can, for example, be applied in destructive spectroscopy schemes. Both techniques are demonstrated using the example of singly protonated glycyrrhetinic acid molecules (GAH+) dissociated by an ultraviolet (UV) laser. Measurements of the photodestruction rate were performed at different intensities of the UV laser, and rates as low as 0.05 s-1 and less have been determined, which is only possible due to the long ion storage times that can be achieved with this apparatus. For the UV laser wavelength of 266 nm, a destruction cross section of (1.1±0.1)∙10E-17 cm2 for GAH+ has been determined.
In this work, feasibility studies towards internal cooling of trapped complex molecular ions have been performed. Such an additional internal cooling could be realized via collisions with laser-cooled neutral atoms. To test their suitability, neutral atoms of Li, Na, K, Rb, Cs, and Yb have been collided with trapped laser-cooled and not cooled Ba+ ions as well as with complex molecular ions. For all species charge exchange reactions with Ba+ ions have been observed excluding these species for collisional cooling. While K, Rb, and Cs showed charge exchange reactions with ground state and laser-excited Ba+ ions, the charge exchange rates of Yb and Ba+ were found to be state dependent. Collisions of neutral Yb atoms were found to be reactive and lead to the formation of adducts and fragments, in contrast to the alkali metals for which no such reactions have been observed. In addition, the motion of cooled, trapped ions has been studied theoretically via simulations. When the translational energy of a trapped ion ensemble is sufficiently reduced, a first-order phase transition from a liquid to a solid state occurs with the ion ensemble changing from a disordered ion cloud to an ordered ion crystal. As ions in a linear quadrupole trap arrange in shell structures, a free motion in radial direction is disabled, and ions can only move to neighboring shells when their kinetic energy is high enough to overcome a certain potential barrier. The simulations have shown that intershell diffusion rates in the considered ion crystals increase exponentially when the ion temperatures exceed values that well agree with the predictions of other established models. Ion ensembles of different ion numbers (300, 500, and 1000 138Ba+ ions) and symmetries (prolate and spherical) have been investigated showing a clear tendency for the phase transition temperatures: The higher the ion number, the lower is the transition temperature.
It is shown that the translational degrees of freedom of a large variety of molecules, from light diatomic to heavy organic ones, can be cooled sympathetically and brought to rest (crystallized) in a linear Paul trap. The method relies on endowing the molecules with an appropriate positive charge, storage in a linear radio frequency trap, and sympathetic cooling. Two well-known atomic coolant species 9Be+ and 137Ba+ are sufficient for cooling the molecular mass range from 2 to 20 000 amu. The large molecular charge required for simultaneous trapping of heavy molecules and of the coolant ions can easily be produced using electrospray ionization. Crystallized molecular ions offer vast opportunities for novel studies.
We have produced ensembles of cold 16O+2, 40Ar+, 12C16O+2, and various isotopes of barium ions (135Ba+, 136Ba+ and 137Ba+) via sympathetic cooling with laser-cooled 138Ba+ in a linear radiofrequency trap. The sympathetically cooled species were embedded in the centre of large 138Ba+ Coulomb crystals containing up to 2000 ions and were identified by motional resonance excitation. Crystals with molecular fractions exceeding 70% were obtained. The observed multi-species crystal structures agree well with results from molecular dynamics simulations. The simulations were also used to deduce an upper limit for the translational temperature of the molecular ions, as low as 20 mK.
We report the sympathetic cooling and Coulomb crystallization of molecular ions above the surface of an ion-trap chip. N2+ and CaH+ ions were confined in a surface-electrode radio-frequency (rf) ion trap and cooled by the interaction with laser-cooled Ca+ ions to secular translational temperatures in the millikelvin range. The configuration of trapping potentials generated by the surface electrodes enabled the formation of planar bicomponent Coulomb crystals and the spatial separation of the molecular from the atomic ions on the chip. The structural and thermal properties of the Coulomb crystals were characterized using molecular dynamics simulations. The present study extends chip-based trapping techniques to cold molecular ions with potential applications in mass spectrometry, chemistry, quantum information science, and spectroscopy.