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The Journal of Chemical Physics

Efficient and accurate simulations of two-dimensional electronic photon-echo signals: Illustration for a simple model of the Fenna–Matthews–Olson complex

Leah Z. Sharp, Dassia Egorova, Wolfgang Domcke

Published Jan 4, 2010• 48 citations
Publisher

Abstract

Two-dimensional (2D) photon-echo spectra of a single subunit of the Fenna-Matthews-Olson (FMO) bacteriochlorophyll trimer of Chlorobium tepidum are simulated, employing the equation-of-motion phase-matching approach (EOM-PMA). We consider a slightly extended version of the previously proposed Frenkel exciton model, which explicitly accounts for exciton coherences in the secular approximation. The study is motivated by a recent experiment reporting long-lived coherent oscillations in 2D transients [Engel et al., Nature 446, 782 (2007)] and aims primarily at accurate simulations of the spectroscopic signals, with the focus on oscillations of 2D peak intensities with population time. The EOM-PMA accurately accounts for finite pulse durations as well as pulse-overlap effects and does not invoke approximations apart from the weak-field limit for a given material system. The population relaxation parameters of the exciton model are taken from the literature. The effects of various dephasing mechanisms on coherence lifetimes are thoroughly studied. It is found that the experimentally detected multiple frequencies in peak oscillations cannot be reproduced by the employed FMO model, which calls for the development of a more sophisticated exciton model of the FMO complex.

DOI
10.1063/1.3268705

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Journal of Chemical Theory and Computation•Jun 2, 2021•30 citations
Two-dimensional (2D) photon-echo spectra of a single subunit of the Fenna-Matthews-Olson (FMO) bacteriochlorophyll trimer of Chlorobium tepidum are simulated, employing the equation-of-motion phase-matching approach (EOM-PMA). We consider a slightly extended version of the previously proposed Frenkel exciton model, which explicitly accounts for exciton coherences in the secular approximation. The study is motivated by a recent experiment reporting long-lived coherent oscillations in 2D transients [Engel et al., Nature 446, 782 (2007)] and aims primarily at accurate simulations of the spectroscopic signals, with the focus on oscillations of 2D peak intensities with population time. The EOM-PMA accurately accounts for finite pulse durations as well as pulse-overlap effects and does not invoke approximations apart from the weak-field limit for a given material system. The population relaxation parameters of the exciton model are taken from the literature. The effects of various dephasing mechanisms on coherence lifetimes are thoroughly studied. It is found that the experimentally detected multiple frequencies in peak oscillations cannot be reproduced by the employed FMO model, which calls for the development of a more sophisticated exciton model of the FMO complex.
Stick-spectrum expressions for electronic two-dimensional (2D) photon-echo (PE) signal of a generic multi-level system are presented and employed to interrelate oscillations in individual peaks of 2D PE signal and the underlying properties (eigenstates and coherent dynamics) of excitonic or vibronic systems. When focusing on the identification of the origin of oscillations in the rephasing part of 2D PE it is found, in particular, that multiple frequencies in the evolution of the individual peaks do not necessarily directly reflect the underlying system dynamics. They may originate from the excited-state absorption contribution to the signal, or arise due to multi-level vibrational structure of the electronic ground state, and represent a superposition of system frequencies, while the latter may evolve independently. The analytical stick-spectrum predictions are verified and illustrated by numerical calculations of 2D PE signals of an excitonic trimer and of a displaced harmonic oscillator with unequal vibrational frequencies in the two electronic states. The excitonic trimer is the smallest excitonic oligomer where excited-state absorption may represent a superposition of excited-state coherences and significantly influence the phase of the observed oscillations. The displaced oscillator is used to distinguish between the frequencies of the ground-state and of the excited-state manifolds, and to demonstrate how the location of a cross peak in 2D pattern of the PE signal "predetermines" its oscillatory behavior. Although the considered models are kept as simple as possible for clarity, the stick-spectrum analysis provides a solid general basis for interpretation of oscillatory signatures in electronic 2D PE signals of much more complex systems with multi-level character of the electronic states.
Abstract Fenna-Matthews-Olson (FMO) bacteriochlorophylls (BChls) are molecules responsible of the high efficiency energy transfer in the photosynthetic process of green sulfur bacteria, controversially associated to quantum phenomena of long lived coherence. This phenomenon is modelled using Quantum Open Systems (QOS) without include memory effects of the surrounding approximated as a phonon bath on thermal equilibrium. This work applies the Hierarchical Equations of Motion method (HEOM), a non-Markovian approach, in the modelling of the system evolution of FMO complex to perform predictions about the coherence times scales together with global and semi-local entanglement during the quantum excitation.
We present a simulation study of population and coherence relaxation dynamics in the third-order nonlinear responses of the Fenna–Matthews–Olson (FMO) light-harvesting photosynthetic complex. Three-exciton correlations have been incorporated and the relevant six-point relaxation superoperator is calculated to second order in coupling to a phonon bath. The dynamics of three-exciton correlations induce new peaks that are absent or much weaker when the three-exciton variables are factorized. Such features were observed in a recent experiment (Engel G S et al 2007 Nature 446 782–6).
We employ multi-level Redfield theory and the equation-of-motion phase-matching approach to model two-dimensional electronic photon-echo signals of a vibronic dimer weakly coupled to an uncorrelated harmonic bath. The vibronic manifold of the dimer is formed by Franck-Condon active vibrational modes (one mode per monomer). We study the effect of the coupled exciton-vibrational dynamics on the two-dimensional photon-echo profiles. Our main focus is the relationship of the system coherences to the oscillatory behavior of the cross-peak intensities with population time. The work represents the first step towards detailed understanding of oscillative signatures in two-dimensional electronic photon-echo signals of vibronic oligomers.
Abstract Quantum effects in photosynthetic energy transport in nature, especially for the typical Fenna-Matthews-Olson (FMO) complexes, are extensively studied in quantum biology. Such energy transport processes can be investigated as open quantum systems that blend the quantum coherence and environmental noise, and have been experimentally simulated on a few quantum devices. However, the existing experiments always lack a solid quantum simulation for the FMO energy transport due to their constraints to map a variety of issues in actual FMO complexes that have rich biological meanings. Here we successfully map the full coupling profile of the seven-site FMO structure by comprehensive characterisation and precise control of the evanescent coupling of the three-dimensional waveguide array. By applying a stochastic dynamical modulation on each waveguide, we introduce the base site energy and the dephasing term in coloured noise to faithfully simulate the power spectral density of the FMO complexes. We show our photonic model well interprets the phenomena including reorganisation energy, vibrational assistance, exciton transfer and energy localisation. We further experimentally demonstrate the existence of an optimal transport efficiency at certain dephasing strength, providing a window to closely investigate environment-assisted quantum transport.
Addressing needs of contemporary nonlinear femtosecond optical spectroscopy, we have developed a fully quantum, numerically accurate wave function-based approach for the calculation of third-order spectroscopic signals of polyatomic molecules and molecular aggregates at finite temperature. The systems are described by multimode nonadiabatic vibronic-coupling Hamiltonians, in which diagonal terms are treated in harmonic approximation, while off-diagonal interstate couplings are assumed to be coordinate independent. The approach is based on the Thermo Field Dynamics (TFD) representation of quantum mechanics and tensor-train (TT) machinery for efficient numerical simulation of quantum evolution of systems with many degrees of freedom. The developed TFD-TT approach is applied to the calculation of time- and frequency-resolved fluorescence spectra of the Fenna-Matthews-Olson (FMO) antenna complex at room temperature taking into account finite time-frequency resolution in fluorescence detection, orientational averaging, and static disorder.