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Physical review. B, Condensed matter

Accuracy of Davydov’s | D1 〉 approximation for soliton dynamics in proteins

Wolfgang Förner

Published Mar 1, 1996• 10 citations
Publisher

Abstract

For the Davydov Hamiltonian several special cases are known which can be solved analytically. Starting from these cases we show that the initial state for a simulation using Davydov's \ensuremath{\Vert}${\mathit{D}}_{1}$〉 approximation has to be constructed from a given set of initial lattice displacements and momenta in the form of a coherent state with its amplitudes independent of the lattices site, corresponding to Davydov's \ensuremath{\Vert}${\mathit{D}}_{2}$〉 approximation. The site dependences in the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 ansatz evolve from this initial state exclusively via the equations of motion. Starting the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 simulation from an ansatz with site-dependent coherent-state amplitudes leads to an evolution which is different from the analytical solutions for the special cases. Thus also in applications of the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 ansatz to polyacetylene \ensuremath{\Vert}${\mathit{D}}_{2}$〉-type initial states always have to be used in contrast to our previous suggestion [W. F\"orner, J. Phys. Condens. Matter 6, 9105 (1994)]. Further we expand the known exact solutions in Taylor series in time and compare expectation values in different orders with the exact results.We find that for an approximation up to third order in time (for the wave function) norm, and total energy, as well as displacements and momenta are reasonably correct for a time up to \ensuremath{\approxeq}0.12--0.14 ps, depending somewhat on the coupling strengh for the transportless case. We performed long-time simulations using the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 approximation where we computed expectation values of the relevant operators with the state (H^/J)\ensuremath{\Vert}${\mathit{D}}_{1}$〉 and the deviation \ensuremath{\Vert}\ensuremath{\delta}〉 from the exact solution over long times, namely 10 ns. We found that in the very long-time scale the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 ansatz is very close to an exact solution. Further we report results from an investigation of the very short-time behavior of the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 state compared with that of an expansion of the exact solution in powers of time t. Within a time of roughly 0.10--0.15 ps the second- and third-order corrections turned out to be not very important. This is due to the fact that our first-order state contains already some terms of the expansion, summed up to infinite order. We found good agreement of the results obtained with our expansion and those from the corresponding \ensuremath{\Vert}${\mathit{D}}_{1}$〉 simulations within the time of about 0.10 ps. Altogether we have shown that the \ensuremath{\Vert}${\mathit{D}}_{1}$〉 state, although of approximative nature, is very close to an exact solution of the Davydov model on time scales from some fs up to ns. \textcopyright{} 1996 The American Physical Society.

DOI
10.1103/physrevb.53.6291

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For the Davydov Hamiltonian several special cases are known which can be solved analytically. Starting from these cases we show that the initial state for a simulation using Davydov's \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 approximation has to be constructed from a given set of initial lattice displacements and momenta in the form of a coherent state with its amplitudes independent of the lattices site, corresponding to Davydov's \ensuremath{\Vert}D2{\mathit{D}}_{2}D2​〉 approximation. The site dependences in the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 ansatz evolve from this initial state exclusively via the equations of motion. Starting the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 simulation from an ansatz with site-dependent coherent-state amplitudes leads to an evolution which is different from the analytical solutions for the special cases. Thus also in applications of the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 ansatz to polyacetylene \ensuremath{\Vert}D2{\mathit{D}}_{2}D2​〉-type initial states always have to be used in contrast to our previous suggestion [W. F"orner, J. Phys. Condens. Matter 6, 9105 (1994)]. Further we expand the known exact solutions in Taylor series in time and compare expectation values in different orders with the exact results.We find that for an approximation up to third order in time (for the wave function) norm, and total energy, as well as displacements and momenta are reasonably correct for a time up to \ensuremath{\approxeq}0.12--0.14 ps, depending somewhat on the coupling strengh for the transportless case. We performed long-time simulations using the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 approximation where we computed expectation values of the relevant operators with the state (H^/J)\ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 and the deviation \ensuremath{\Vert}\ensuremath{\delta}〉 from the exact solution over long times, namely 10 ns. We found that in the very long-time scale the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 ansatz is very close to an exact solution. Further we report results from an investigation of the very short-time behavior of the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 state compared with that of an expansion of the exact solution in powers of time t. Within a time of roughly 0.10--0.15 ps the second- and third-order corrections turned out to be not very important. This is due to the fact that our first-order state contains already some terms of the expansion, summed up to infinite order. We found good agreement of the results obtained with our expansion and those from the corresponding \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 simulations within the time of about 0.10 ps. Altogether we have shown that the \ensuremath{\Vert}D1{\mathit{D}}_{1}D1​〉 state, although of approximative nature, is very close to an exact solution of the Davydov model on time scales from some fs up to ns. \textcopyright{} 1996 The American Physical Society.
We present equations of motion for the Su-Schrieffer-Heeger (SSH) Hamiltonian derived with the help of ansatz states similar to Davydov's so-called mod D 1 ) state for soliton dynamics in proteins. Such an ansatz state allows for quantum effects in the lattice and goes beyond previous calculations which mostly apply adiabatic models. In the most general case, called mod Phi 0 ), which is treated here in detail, we assume that the coherent-state amplitudes for the lattice depend on the site and the molecular orbital of the electrons. The equations of motion are derived from the Lagrangian of the system, a method which is equivalent to the time-dependent variational principle. In the resulting equations we find that, although the SSH Hamiltonian is a one-particle operator, indirect electron-electron interactions are present in the system which originate from the electron-phonon interactions. Inclusion of direct electron-electron interactions, will give insight into the interplay between electron-electron and electron-phonon interactions which can lead effectively to an attractive force between the electrons in systems other than polyacetylene, where bipolarons are known to be unstable. Further with our time-dependent wavefunction also vibrational details of absorption spectra can be computed. From the equations of motion several approximations can be derived. In a further approximation, mod Phi 2 ), the dependence of the coherent-state amplitudes on the lattice site is neglected. This mod Phi 2 ) ansatz state consists of a simple product of the electronic and the lattice wavefunctions; however, the electrons are not constrained to follow the lattice dynamics instantaneously as in the adiabatic case. Finally the classical adiabatic case is discussed on which soliton-dynamics simulations are usually based. Further we discuss how to include temperature effects in our model. Applications to soliton dynamics are discussed for the example of the mod Phi 2 ) model with emphasis on the dependence of the results on soliton width and temperature. We found that in contrast to results reported in the literature, where a similar ansatz is used, but only one electron is treated explicitly, the solitons remain stable also for small soliton widths. This indicates that the interactions of the electrons not occupying the soliton level with the lattice have a stabilizing effect on the soliton. Further our results indicate that the temperature model using random forces and dissipation terms to introduce temperature effects has to be applied with extreme care in this case due to the strong electron-lattice interactions.
Abstract We propose a new version of the Davydov Ansatz for the approximate solution of the time-dependent Schrödinger equation (TDSE) and apply it to a spin 1/2 system coupled to a single bosonic mode. In complexity the new Ansatz is between the well-studied D1 and D2 Ansätze and is therefore termed D1.5 Ansatz. It is tailored to specific but still rather general initial conditions and is free of numerical inconsistencies that plague the D1 Ansatz. Finally, a generalization to nontrivial multiplicity in the oscillator state space is given that leads, in principle, to an exact solution of the TDSE for arbitrary system parameters. By employing Bargmann coherent states, the equations of motion could be made explicit, which is a big advantage, computationally.
The essential ideas of Davydov's theory of molecular solitons are used to develop a variation of the Zwanzig-Nakajima projection technique. The projection operator is time dependent and contains the feedback characteristic of the soliton dynamic. The result is a nonlinear equation of motion for a reduced density matrix. A Markoffian approximation is considered which contributes corrections to the Davydov-type evolution. The approximate equation of motion embodies the correct fluctuation-dissipation relation for this system and recovers the known exact results in the transportless limit.
Transport of excitations along proteins can be formulated in a quantum physics context, based on the periodicity and vibrational modes of the structures. Numerically exact solutions of the corresponding equations are very challenging to obtain on classical computers. Approximate solutions based on the Davydov ansatz have demonstrated the possibility of stabilized solitonic excitations along the protein, however, experimentally these solutions have never been directly observed. Here we propose an alternative study of biophysical transport phenomena based on a quantum simulator composed of a chain of ultracold dressed Rydberg atoms, which allows for a direct observation of the Davydov phenomena. We show that there is an experimentally accessible range of parameters where the system directly mimics the Davydov equations and their solutions. Moreover, we show that such a quantum simulator has access to the regime in between the small and large polaron regimes, which cannot be described perturbatively.