A method of molecular dynamics with quantum corrections, practical for studies of large molecular systems, is reviewed. The approach is based on the Bohmian formulation of the time-dependent Schrödinger equation in which a wavefunction is represented by an ensemble of interdependent trajectories. The quantum effects come from the quantum potential acting on trajectories on par with the usual classical potential. The quantum potential is determined from the evolving nuclear wavefunction, i.e. from the quantum trajectory (QT) ensemble itself. For practical and conceptual reasons the quantum potential and corresponding quantum nuclear effect are computed only for the selected light nuclei. For studies of reactive chemical processes, the classical potential is computed on-the-fly using the density functional tight binding method of electronic structure. A massively parallel implementation, based on the message passing interface allows for efficient simulations of ensembles of thousands of trajectories describing systems of up to 200 atoms. As a biochemical application, the approximate QT approach is used to model the tunnelling-dominated proton transfer in soybean-lipoxygenase-1. A materials science application is represented by a study of the nuclear quantum effect on adsorption of hydrogen and deuterium on a C37H15 molecule, which is a model ‘flake’ of graphene.
A method of molecular dynamics with quantum corrections, practical for studies of large molecular systems, is reviewed. The approach is based on the Bohmian formulation of the time-dependent Schrödinger equation in which a wavefunction is represented by an ensemble of interdependent trajectories. The quantum effects come from the quantum potential acting on trajectories on par with the usual classical potential. The quantum potential is determined from the evolving nuclear wavefunction, i.e. from the quantum trajectory (QT) ensemble itself. For practical and conceptual reasons the quantum potential and corresponding quantum nuclear effect are computed only for the selected light nuclei. For studies of reactive chemical processes, the classical potential is computed on-the-fly using the density functional tight binding method of electronic structure. A massively parallel implementation, based on the message passing interface allows for efficient simulations of ensembles of thousands of trajectories describing systems of up to 200 atoms. As a biochemical application, the approximate QT approach is used to model the tunnelling-dominated proton transfer in soybean-lipoxygenase-1. A materials science application is represented by a study of the nuclear quantum effect on adsorption of hydrogen and deuterium on a C37H15 molecule, which is a model ‘flake’ of graphene.
The quantum nature of nuclei often affects molecular structure and properties, which are associated with the motion of protons and other light nuclei at low temperature. However, incorporation of the nuclear quantum effects into theoretical studies of large molecular systems is an outstanding challenge in theoretical chemistry. In this paper, the de Broglie-Bohm formulation of the time-dependent Schrödinger equation is used as a framework for the development of approximate quantum corrections to the dynamics of a trajectory ensemble, representing a time-dependent wave function. Specifically, the trajectory-centered local Least Square Fit (L-LSF) to the trajectory attributes is introduced, formally analyzed and illustrated on model potentials, typically used to benchmark approximate and semiclassical dynamics methods. The L-LSF method improves the dynamics accuracy, compared to the globally defined approximations, developed previously, and is shown to converge to the exact (generally impractical for large systems) limit of quantum dynamics.
Chemical dynamics, in principle, should be understood by solving the time-dependent Schrödinger equation for a molecular system, describing motion of the nuclei and electrons. However, the computational efforts to solve this partial second-order differential equation scales exponentially with the system size, which prevents us from getting exact numerical solutions for systems larger than 4-5 atoms. Thus, approximations simplifying the picture are necessary. The so-called Born-Oppenheimer approximation, separating motion of the electrons and nuclei is the central one: solution to the electronic Schrödinger equation defines the potential energy surface on which the nuclear motion unfolds, and there are standard quantum chemistry software packages for solving the electronic Schrödinger equation. For the nuclear Schrödinger equation, however, there are no widely applicable quantum-mechanical approaches, and most simulations are performed using classical Newtonian mechanics which is often adequate due to large nuclear masses. However, the nuclear quantum effects are significant for chemical processes involving light nuclei at low energies, and including these effects into simulation, even approximately, is highly desirable. In this dissertation, an approximate methodology of including quantum-mechanical effects within the quantum trajectory or the de Broglie-Bohm formulation of the Schrödinger equations is developed. Use of the trajectory framework makes the approach scalable to hundreds of degrees of freedom. The methodology is applied to study high-dimensional systems (solid He4 and others) relevant to chemistry.
The quantum trajectory framework incorporates quantum effects on dynamics through the quantum potential acting on a trajectory ensemble in addition to the classical potential. A global quadratic approximation to the quantum potential makes the method practical in many dimensions and captures dominant quantum effects in semiclassical systems. In this paper the approach is further developed to describe the "double well" dynamicsa prototype of the proton transfer reactionswhich exhibits the "hard" quantum effect of tunneling. Accurate description is achieved by combining the approximate quantum trajectory dynamics with the population amplitudes in the reactant and product wells. The quantum trajectory dynamics is defined by the asymptotic classical potentials. The population amplitudes represented in a small basis describe transfer between the wells. The method is exact if the reactant/product potentials are quadratic and the basis size is sufficiently large. In the semiclassical regime the trajectory dynamics is approximate and the basis size can be as small as two functions. The approach is fully compatible with the trajectory description of multidimensional systems capturing quantum tunneling along the reactive coordinate and zero-point energy flow among all degrees of freedom.
The approach of defining quantum corrections on nuclear dynamics of molecular systems incorporated approximately into selected degrees of freedom, is described. The approach is based on the Madelung-de-Broglie-Bohm formulation of time-dependent quantum mechanics which represents a wavefunction in terms of an ensemble of trajectories. The trajectories follow classical laws of motion except that the quantum potential, dependent on the wavefunction amplitude and its derivatives, is added to the external, classical potential. In this framework the quantum potential, determined approximately for practical reasons, is included only into the "quantum" degrees of freedom describing light particles such as protons, while neglecting with the quantum force for the heavy, nearly classical nuclei. The entire system comprised of light and heavy particles is described by a single wavefunction of full dimensionality. The coordinate space of heavy particles is divided into spatial domains or subspaces. The quantum force acting on the light particles is determined for each domain of similar configurations of the heavy nuclei. This approach effectively introduces parametric dependence of the reduced dimensionality quantum force, on classical degrees of freedom. This strategy improves accuracy of the quantum force and does not restrict interaction between the domains. The concept is illustrated for two-dimensional scattering systems, where the quantum force is required to reproduce vibrational energy of the quantum degree of freedom.
Quantum trajectory calculations for electrons are a useful tool in the field of molecular dynamics, e.g. to understand processes in ultrafast spectroscopy. They have, however, two limitation: On the one hand, such calculations are typically based on the Born-Oppenheimer approximation (BOA) and the electron dynamics for stationary nuclei is considered, thus neglecting quantum effects of the nuclei. On the other hand, even if the quantum nuclear motion would be taken into account, a BOA dynamics on a single potential energy surface would not provide any electron trajectories because the electronic part is treated as a stationary problem. By using the exact factorization method, we overcome these limitations and generalize the theory of electronic quantum trajectories to a fully quantum-mechanical treatment of the nuclei. After reviewing the time-dependent theory of quantum hydrodynamics and quantum trajectories, we show that the nuclei can be viewed as a quantum clock for the electronic motion and we develop a fully quantum-mechanical clock-dependent version of quantum hydrodynamics. This theory is used to obtain electronic trajectories for quantum nuclei, as is exemplified for a model system of a proton-coupled electron transfer dynamics. Our work generalizes the concept of quantum trajectories and lays the foundations for the development of trajectory-based simulation methods of electron dynamics beyond the BOA.
Bohm theory is a formulation of Quantum Mechanics that characterises the state of a quantum system according to both the wave function, as in the conventional formulation, and the coordinates (positions) of all the particles that evolve in time drawing quantum continuous trajectories. Furthermore, a statistical ensemble of all the possible trajectories, raising from the impossibility to know the initial position of all the particles, establishes the exact correspondence with the traditional Quantum Mechanics. From a computational point of view, Bohm theory has found many applications in Chemical Physics especially to develop new methodologies for solving the Schrödinger equation and to address semi-classical approximations of Quantum Mechanics. From a theoretical point of view, the most appealing feature of Bohm theory is its capability to supply a conceptual map between the quantum formalism and our representation of what a chemical system is. Chemical systems are composed of molecules, but the same idea of molecule requires a specific arrangement in the space of particles, i.e., the nuclei of the atoms. The statistical description of conventional Quantum Mechanics on the basis of wave function alone is insufficient to establish a clear correspondence with such a picture of molecules. Indeed, chemists employ usually Classical Mechanics in order to overcome this drawback of the standard quantum theory. On the other hand, if the particles position is included in the quantum formalism, as Bohm theory does, the map can be defined in a self-consistent way. In other words, Bohm theory appears to be the suitable quantum framework to represent molecules and their motion. The chemical representation of molecular systems finds a natural correspondence with a single Bohm trajectory, since it is always implicitly assumed that molecular components have specific spatial position independently of our knowledge about it. Consequently, we develop a quantum method whose fundamental assumption is that a single Bohm trajectory, i.e., a quantum molecular trajectory, describes the molecular systems and the molecular motion correctly. First of all, we examine the correspondence between a single Bohm trajectory and the conventional Quantum Mechanics, without using the ensemble of trajectories. We verify that such a correspondence exists through numerical simulations and we prove formally that the statistical properties of a single Bohm trajectory explain the probabilistic description of Quantum Mechanics. Once the consistency of this original approach has been established, we investigate the predicted properties. For instance, we take into account the constants of motion (such as the energy) corresponding to the time evolution of the coordinates and the behaviour of simple chemical systems, e.g., the vibrational motion of single molecules interacting with a resonant field. In this way, unexpected features of the molecular motion are found. Secondly, we tackle the challenge of describing many components systems (like the chemical systems in ordinary conditions). As a matter of fact, the computation of the Bohm trajectory and of the wave function is extremely demanding. However, the statistical properties of the Bohm trajectory allow the derivation of stochastic theories for examining the dynamics of open quantum systems, i.e., few molecules (or few degrees of freedom) interacting with their environment (the other molecules). One of the developed stochastic methods correlates the dynamics of the reduced density matrix, for the degrees of freedom of interest, to the evolution of the corresponding Bohm coordinates. In other words, the Bohm equation, determining the set of all the particles velocities according to the full wave function, is replaced with a stochastic one that approximates the velocity of a subset of coordinates according to the reduced density matrix. In such a way, the quantum fluctuations induced by the environment are taken into account. The advantage of this method concerns its capability of describing quantum systems, including open quantum systems, in terms of a quantum trajectory. This could allow the understanding of the molecular motion during a spectroscopical experiment. The possibility of investigating reactive systems, such as conformational changes, is particularly interesting. As a matter of fact, chemical reactions can be completely characterised only through the particles motion and we define the suit- able quantum methodology providing a self-consistent description of the molecular motion.