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Theoretical Studies of Quantum Dynamics

Eunji Sim

Published Dec 1, 1997• 0 citations
OpenAlex

Abstract

Using the FPF method, we have carried out accurate path integral simulations of the primary charge separation in bacterial photosynthesis. The process is modeled in terms of three coupled electronic states corresponding to the photoexcited special pair, the reduced accessory bacteriochlorophyll and the reduced bacteriopheophytin of the L branch which interact with a dissipative medium of protein and solvent degrees of freedom. We found that a free energy of the reduced bacteriochlorophyll state about 400 cm$\sp{-1}$ lower than that of the excited special pair, which is associated with a two-step electron transfer mechanism, yields state populations in agreement with experimental results on wild-type and modified reaction centers including the observed temperature dependence. The results are found to be rather stable with respect to reasonable changes of the medium spectral density and the specifics of the nonequilibrium configuration of the photoexcited donor state.

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Decoherence of coherent electronic excited state in the reaction center of the photosynthetic purple bacterium Rhodobacter sphaeroides

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In this paper, we present a theoretical description to the quantum coherence and decoherence phenomena of energy transfer in photosynthesis observed in a recent experiment [see Science 316, 1462 (2007)]. As a successive two-color laser pulses with selected frequencies cast on a sample of the photosynthetic purple bacterium Rb. sphaeroides two resonant excitations of electrons in chromophores can be generated. However, this effective two-level subsystem will interact with its protein environment and decoherence is inevitable. We describe this subsystem coupled with its environment as a dynamical spin-boson model. The non-Markovian decoherence dynamics is described using a quasi-adiabatic propagator path integral (QUAPI) approach. With the photon-induced effective time-dependent level splitting energy and level flip coupling coefficient between the two excited states and the environment-induced non-Markovian decoherence dynamics, our theoretical result is in good agreement with the experimental data.

arXiv:0809.0039•Aug 31, 2008•0 citations

Decoherence dynamics of coherent electronic excited states in the photosynthetic purple bacteriumRhodobacter sphaeroides

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In this paper, we present a theoretical description to the quantum coherence and decoherence phenomena of energy transfer in photosynthesis observed in a recent experiment [Science 316, 1462 (2007)]. As a successive two-color laser pulses with selected frequencies cast on a sample of the photosynthetic purple bacterium Rb. sphaeroides two resonant excitations of electrons in chromophores can be generated. However, this effective two-level subsystem will interact with its protein environment and decoherence is inevitable. We describe this subsystem coupled with its environment as a dynamical spin-boson model. The non-Markovian decoherence dynamics is described using a quasiadiabatic propagator path integral (QUAPI) approach. With the photon-induced effective time-dependent level splitting energy and level flip coupling coefficient between the two excited states and the environment-induced non-Markovian decoherence dynamics, our theoretical result is in good agreement with the experimental data.

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In natural photosynthesis systems, pigment-protein complexes harvest the photon from sunlight with near-unity quantum efficiency. These complexes show incredible properties that cannot be merely extrapolated from knowledge of their composition. Additionally, the environment perturbing the light-harvesting process significantly affects the mechanism of photosynthesis. This research investigates the photosystem II reaction center (PSII RC) from a new perspective which considers the restricted path of the exciton transfer, in the photosynthesis system, as a quantum trajectory picture with the quantum continuous measurement. In this work, the corridor path of exciton transfer dynamics satisfies the equation of motion, as the spin dynamics, which consists of precession, relaxation, and random force rapidly fluctuating spin splitting arising from the bath. Moreover, the width of the corridor is an important factor for restricting path dynamics resulting in the localization and decoherence phenomenon. Our method is to analyze exciton transfer dynamics through paths on the Bloch sphere, in order to investigate the propagating states in accordance with the weight functional which depends on the coupling parameter between the system and environment as the phonon bath. Our results show that the paths outside the width of the corridor have a considerably lower weight functional and decoherence functional than those inside the width. Therefore, the degrees of localization, the weight functional, and the decoherence functional are related. Furthermore, the simulation reveals three characteristics of exciton transfer: gradual transfer, no transfer, and rapid transfer, relying significantly on the coupling between the system and phonons.

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Quantum mechanical effects play an important role in dynamics of condensed phases. It is also well known that the difficulty of solving the full Schrödinger equation grows exponentially with time. One approach to cope up with this difficulty is to restrict quantum treatment to a few particles (system) and treat the dynamics of the rest of particles (bath) using classical trajectories. Path integral methods due to their trajectory like nature provide excellent tool to develop quantum-classical methods, but to capture long time dynamics, the number of classical trajectories grow exponentially. A part of this work focuses on improving Quantum-Classical Path Integral (QCPI) treatments that allow for larger path integral time step by building “smarter” propagators. These improved solvent-driven reference propagators is developed by incorporating physically motivated approximations to the solvent. When used in QCPI expression they allow convergence with larger time steps leading to an exponential reduction of the number of trajectories required. Further advantages of these propagators include improvements in path filtering techniques, smaller number of path integral steps for achieving the memory decoherence time, and smoothing of the integrand which leads to convergence with fewer Monte Carlo sample points. These ideas have been validated on the spin boson model - a prototypical model to study condensed phase dynamics, which consists of a two-level system coupled to a harmonic bath. The new approach of building the reference propagators combined with their iterative evaluation and filtering is validated using parameters that mimic the first electron transfer in wild-type photosynthetic reaction centres. A real-world dynamical simulation contains various anharmonic effects, Ferrocene (donor) - Ferrocenium (acceptor) system in liquid Benzene was studied where the anharmonic effects of the bath of liquid Benzene on the dynamics of the system were treated using Ensemble Averaged Classical Path. The process of electron or proton transfer occurs between two species having different charges and fluctuations in the solvent plays a key role in determining the rates of such reaction dynamics. To correctly account for the effects of initial distribution of the solvent on the dynamics of the quantum system, the concept of equilibrating the bath to the donor state of the system is used. Two different approaches have been used within the influence functional framework.

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Modeling chemical dynamics is essential for understanding, predicting, and optimizing chemical processes. Because realistic chemical systems involve many interacting degrees of freedom, direct propagation of the many-body Schr"{o}dinger equation is intractable for all but the smallest systems. Quantum information platforms offer a fundamentally different representation: a $d$-dimensional state may be encoded using $k=log_2(d)$ qubits rather than storing each amplitude independently. To harness this advantage for chemistry, it is necessary to develop quantum algorithms and hardware architectures capable of simulating the open-system dynamics ubiquitous in condensed-phase and molecular environments. In the first chapter, we develop a theoretical framework for simulating a cavity-modified photoinduced charge-transfer reaction in the carotenoid–porphyrin–C$_{60}$ (CPC$_{60}$) molecular triad dissolved in tetrahydrofuran (THF). Nonequilibrium Fermi’s Golden Rule (NE-FGR) rate coefficients are obtained as a product of cavity-free and cavity-modified correlation functions. We further introduce an approximation based on Instantaneous Marcus Theory (IMT) that closely tracks the full NE-FGR result across all relevant time scales. Population transfer rates computed from the population-only off-diagonal quantum master equation (p-tcl-OD-QME) are shown to be consistent with the NE-FGR predictions. Our results demonstrate that nonequilibrium charge-transfer dynamics are significantly modified by coupling to an optical cavity. The second chapter addresses the integration of linear nonautonomous ordinary differential equations on digital quantum hardware. Rather than classically constructing a nonunitary propagator at each time step and embedding it into a larger unitary operation for execution on quantum hardware, we eliminate this classical–quantum partitioning. We derive and propagate differential equations for the singular value decomposition (SVD) factors of the propagator directly, enabling time evolution to be implemented within a quantum-compatible framework. This approach shifts the locus of time integration from the classical processor to the quantum device. In the third chapter, we investigate the feasibility of simulating chemical reaction dynamics on a parametrically driven bosonic superconducting Kerr-cat device. This analog platform enables direct control over parameters defining an effective double-well free-energy landscape, as well as over environmental factors such as temperature and system–bath coupling strength. We demonstrate that proton transfer dynamics in prototypical benchmark systems, including hydrogen-bonded dimers of malonaldehyde and DNA base pairs, can be accurately reproduced using experimentally accessible Kerr-cat architectures.

•Jan 1, 2026•0 citations
Using the FPF method, we have carried out accurate path integral simulations of the primary charge separation in bacterial photosynthesis. The process is modeled in terms of three coupled electronic states corresponding to the photoexcited special pair, the reduced accessory bacteriochlorophyll and the reduced bacteriopheophytin of the L branch which interact with a dissipative medium of protein and solvent degrees of freedom. We found that a free energy of the reduced bacteriochlorophyll state about 400 cm\sp−1\sp{-1}\sp−1 lower than that of the excited special pair, which is associated with a two-step electron transfer mechanism, yields state populations in agreement with experimental results on wild-type and modified reaction centers including the observed temperature dependence. The results are found to be rather stable with respect to reasonable changes of the medium spectral density and the specifics of the nonequilibrium configuration of the photoexcited donor state.
In this paper, we present a theoretical description to the quantum coherence and decoherence phenomena of energy transfer in photosynthesis observed in a recent experiment [see Science 316, 1462 (2007)]. As a successive two-color laser pulses with selected frequencies cast on a sample of the photosynthetic purple bacterium Rb. sphaeroides two resonant excitations of electrons in chromophores can be generated. However, this effective two-level subsystem will interact with its protein environment and decoherence is inevitable. We describe this subsystem coupled with its environment as a dynamical spin-boson model. The non-Markovian decoherence dynamics is described using a quasi-adiabatic propagator path integral (QUAPI) approach. With the photon-induced effective time-dependent level splitting energy and level flip coupling coefficient between the two excited states and the environment-induced non-Markovian decoherence dynamics, our theoretical result is in good agreement with the experimental data.
In this paper, we present a theoretical description to the quantum coherence and decoherence phenomena of energy transfer in photosynthesis observed in a recent experiment [Science 316, 1462 (2007)]. As a successive two-color laser pulses with selected frequencies cast on a sample of the photosynthetic purple bacterium Rb. sphaeroides two resonant excitations of electrons in chromophores can be generated. However, this effective two-level subsystem will interact with its protein environment and decoherence is inevitable. We describe this subsystem coupled with its environment as a dynamical spin-boson model. The non-Markovian decoherence dynamics is described using a quasiadiabatic propagator path integral (QUAPI) approach. With the photon-induced effective time-dependent level splitting energy and level flip coupling coefficient between the two excited states and the environment-induced non-Markovian decoherence dynamics, our theoretical result is in good agreement with the experimental data.
In natural photosynthesis systems, pigment-protein complexes harvest the photon from sunlight with near-unity quantum efficiency. These complexes show incredible properties that cannot be merely extrapolated from knowledge of their composition. Additionally, the environment perturbing the light-harvesting process significantly affects the mechanism of photosynthesis. This research investigates the photosystem II reaction center (PSII RC) from a new perspective which considers the restricted path of the exciton transfer, in the photosynthesis system, as a quantum trajectory picture with the quantum continuous measurement. In this work, the corridor path of exciton transfer dynamics satisfies the equation of motion, as the spin dynamics, which consists of precession, relaxation, and random force rapidly fluctuating spin splitting arising from the bath. Moreover, the width of the corridor is an important factor for restricting path dynamics resulting in the localization and decoherence phenomenon. Our method is to analyze exciton transfer dynamics through paths on the Bloch sphere, in order to investigate the propagating states in accordance with the weight functional which depends on the coupling parameter between the system and environment as the phonon bath. Our results show that the paths outside the width of the corridor have a considerably lower weight functional and decoherence functional than those inside the width. Therefore, the degrees of localization, the weight functional, and the decoherence functional are related. Furthermore, the simulation reveals three characteristics of exciton transfer: gradual transfer, no transfer, and rapid transfer, relying significantly on the coupling between the system and phonons.
Quantum mechanical effects play an important role in dynamics of condensed phases. It is also well known that the difficulty of solving the full Schrödinger equation grows exponentially with time. One approach to cope up with this difficulty is to restrict quantum treatment to a few particles (system) and treat the dynamics of the rest of particles (bath) using classical trajectories. Path integral methods due to their trajectory like nature provide excellent tool to develop quantum-classical methods, but to capture long time dynamics, the number of classical trajectories grow exponentially. A part of this work focuses on improving Quantum-Classical Path Integral (QCPI) treatments that allow for larger path integral time step by building “smarter” propagators. These improved solvent-driven reference propagators is developed by incorporating physically motivated approximations to the solvent. When used in QCPI expression they allow convergence with larger time steps leading to an exponential reduction of the number of trajectories required. Further advantages of these propagators include improvements in path filtering techniques, smaller number of path integral steps for achieving the memory decoherence time, and smoothing of the integrand which leads to convergence with fewer Monte Carlo sample points. These ideas have been validated on the spin boson model - a prototypical model to study condensed phase dynamics, which consists of a two-level system coupled to a harmonic bath. The new approach of building the reference propagators combined with their iterative evaluation and filtering is validated using parameters that mimic the first electron transfer in wild-type photosynthetic reaction centres. A real-world dynamical simulation contains various anharmonic effects, Ferrocene (donor) - Ferrocenium (acceptor) system in liquid Benzene was studied where the anharmonic effects of the bath of liquid Benzene on the dynamics of the system were treated using Ensemble Averaged Classical Path. The process of electron or proton transfer occurs between two species having different charges and fluctuations in the solvent plays a key role in determining the rates of such reaction dynamics. To correctly account for the effects of initial distribution of the solvent on the dynamics of the quantum system, the concept of equilibrating the bath to the donor state of the system is used. Two different approaches have been used within the influence functional framework.
Ultrafast spectroscopy experiments show that photosynthetic systems can preserve quantum beats in the process of electronic energy transfer between pigments, even at room temperature. But what does this discovery imply for biology - and for quantum mechanics? This dissertation examines photosynthesis through the tools of quantum information science. We evaluate to what extent photosynthesis can be thought of as a type of quantum technology, and consider how we can apply experimental tools widely used for quantum technologies (state tomography and coherent control) to photosynthesis. Throughout, we use the Fenna-Matthews-Olson (FMO) complex of greens sulfur bacteria as a model photosynthetic pigment-protein complex.In Part I, we evaluate two mechanisms for the possible biological relevance of quantum coherent motion. First, we consider the extent to which dynamics in light-harvesting systems exhibit the quantum speedups characteristic of quantum algorithms and quantum walks. Second, we demonstrate a ratchet effect in electronic energy transfer enabled by partially coherent dynamics. To do so, we build a new model of energy transfer between weakly coupled light-harvesting complexes to understand how electronic coherence arises under natural conditions.In Part II, we present proposals for experimental probes of light harvesting dynamics with ultrafast spectroscopy. We show how the signal from pump-probe spectroscopy can be formally inverted to determine the excited state electronic density matrix. Finally, we examine the feasiblity of coherent control experiments on light-harvesting systems, and provide two realistic targets feasible with present-day technology.
Modeling chemical dynamics is essential for understanding, predicting, and optimizing chemical processes. Because realistic chemical systems involve many interacting degrees of freedom, direct propagation of the many-body Schr"{o}dinger equation is intractable for all but the smallest systems. Quantum information platforms offer a fundamentally different representation: a ddd-dimensional state may be encoded using k=log2(d)k=log_2(d)k=log2​(d) qubits rather than storing each amplitude independently. To harness this advantage for chemistry, it is necessary to develop quantum algorithms and hardware architectures capable of simulating the open-system dynamics ubiquitous in condensed-phase and molecular environments. In the first chapter, we develop a theoretical framework for simulating a cavity-modified photoinduced charge-transfer reaction in the carotenoid–porphyrin–C60_{60}60​ (CPC60_{60}60​) molecular triad dissolved in tetrahydrofuran (THF). Nonequilibrium Fermi’s Golden Rule (NE-FGR) rate coefficients are obtained as a product of cavity-free and cavity-modified correlation functions. We further introduce an approximation based on Instantaneous Marcus Theory (IMT) that closely tracks the full NE-FGR result across all relevant time scales. Population transfer rates computed from the population-only off-diagonal quantum master equation (p-tcl-OD-QME) are shown to be consistent with the NE-FGR predictions. Our results demonstrate that nonequilibrium charge-transfer dynamics are significantly modified by coupling to an optical cavity. The second chapter addresses the integration of linear nonautonomous ordinary differential equations on digital quantum hardware. Rather than classically constructing a nonunitary propagator at each time step and embedding it into a larger unitary operation for execution on quantum hardware, we eliminate this classical–quantum partitioning. We derive and propagate differential equations for the singular value decomposition (SVD) factors of the propagator directly, enabling time evolution to be implemented within a quantum-compatible framework. This approach shifts the locus of time integration from the classical processor to the quantum device. In the third chapter, we investigate the feasibility of simulating chemical reaction dynamics on a parametrically driven bosonic superconducting Kerr-cat device. This analog platform enables direct control over parameters defining an effective double-well free-energy landscape, as well as over environmental factors such as temperature and system–bath coupling strength. We demonstrate that proton transfer dynamics in prototypical benchmark systems, including hydrogen-bonded dimers of malonaldehyde and DNA base pairs, can be accurately reproduced using experimentally accessible Kerr-cat architectures.