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arXiv:2610.36984

Quantum Evolution Kernel for Node-Attributed Graphs

Manuel Padovani, Alessandra Di Pierro, Claudia Daffara

quant-phcs.LGSubmitted Oct 27, 2026• Announced Oct 28, 2026• 0 citations
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Abstract

We present a novel approach to embed node-attributed graphs onto neutral-atom quantum computers, and propose an application to digit recognition. Our approach extends PASQAL's quantum evolution kernel (QEK) by introducing a node-level feature encoding based on three-level quantum states. To this purpose, we present a prototype showing how the resulting embedding can be leveraged to extract correlation-based information for classification tasks. The entire quantum process is simulated using Pasqal's Pulser library, which inevitably imposes constraints on the size of the experimental datasets. We compare our method with classical baselines to evaluate its potential. We show that, for the digit recognition task, our method achieves a higher mean accuracy than the more commonly used Jensen-Shannon distance-based methods by utilizing the Wasserstein distance.

AI Summary

The paper studies how to incorporate continuous node attributes into neutral-atom quantum evolution kernels for graph classification. It extends a Rydberg-based graph embedding by using local Raman pulses to encode feature pairs in two hyperfine ground states, followed by interaction-driven evolution involving a third, Rydberg state. Atom positions encode graph connectivity, while the hyperfine populations modulate participation in Rydberg excitation. Measurements yield graph-level distributions of excitation fractions and pairwise correlations. Exponentiated one-dimensional Wasserstein-$1$ distances define positive-semidefinite kernels, combined through optimized weights and used in support-vector classification. The construction is evaluated entirely through Pulser simulations on MNIST images converted into graphs with four node features: coordinates and two local angular descriptors. Simulations restrict graphs to at most nine nodes and use 500 shots per circuit. Evolution time is optimized on 200 training examples, selecting $t=240.1\,\mathrm{ns}$. Classification uses varying training sizes, five random seeds, and a fixed balanced test set of 150 examples. Wasserstein kernels achieve higher mean accuracy than the tested Jensen–Shannon, Hellinger, and Euclidean alternatives; including node features improves performance over the featureless quantum kernel. The resulting model performs comparably to a positional Weisfeiler–Lehman kernel but below the combined-feature WL kernel and a graph convolutional network. The stated limitations include small simulated datasets, graph filtering and geometric hardware constraints, and classical $O(|V|^2)$ correlation post-processing. No hardware experiment or computational or learning advantage is demonstrated; establishing such an advantage remains open.

Little sign of AI-generated textIncrementalSmall numerics only

Error found: The supplied text reports higher mean accuracy for Wasserstein but contains neither numerical results nor visible plotted data with which to verify that ordering or its uncertainty. Because Wasserstein uses unbinned observations and Jensen–Shannon uses binned distributions, the comparison does not distinguish an effect of metric choice from an effect of discretization.

Written by gpt-6.1-sol from the paper's full text. Automated: it can be wrong.

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We present a novel approach to embed node-attributed graphs onto neutral-atom quantum computers, and propose an application to digit recognition. Our approach extends PASQAL's quantum evolution kernel (QEK) by introducing a node-level feature encoding based on three-level quantum states. To this purpose, we present a prototype showing how the resulting embedding can be leveraged to extract correlation-based information for classification tasks. The entire quantum process is simulated using Pasqal's Pulser library, which inevitably imposes constraints on the size of the experimental datasets. We compare our method with classical baselines to evaluate its potential. We show that, for the digit recognition task, our method achieves a higher mean accuracy than the more commonly used Jensen-Shannon distance-based methods by utilizing the Wasserstein distance.
The paper studies how to incorporate continuous node attributes into neutral-atom quantum evolution kernels for graph classification. It extends a Rydberg-based graph embedding by using local Raman pulses to encode feature pairs in two hyperfine ground states, followed by interaction-driven evolution involving a third, Rydberg state. Atom positions encode graph connectivity, while the hyperfine populations modulate participation in Rydberg excitation.
Measurements yield graph-level distributions of excitation fractions and pairwise correlations. Exponentiated one-dimensional Wasserstein-111 distances define positive-semidefinite kernels, combined through optimized weights and used in support-vector classification. The construction is evaluated entirely through Pulser simulations on MNIST images converted into graphs with four node features: coordinates and two local angular descriptors. Simulations restrict graphs to at most nine nodes and use 500 shots per circuit. Evolution time is optimized on 200 training examples, selecting t=240.1 nst=240.1\,\mathrm{ns}t=240.1ns. Classification uses varying training sizes, five random seeds, and a fixed balanced test set of 150 examples.
Wasserstein kernels achieve higher mean accuracy than the tested Jensen–Shannon, Hellinger, and Euclidean alternatives; including node features improves performance over the featureless quantum kernel. The resulting model performs comparably to a positional Weisfeiler–Lehman kernel but below the combined-feature WL kernel and a graph convolutional network.
The stated limitations include small simulated datasets, graph filtering and geometric hardware constraints, and classical O(∣V∣2)O(|V|^2)O(∣V∣2) correlation post-processing. No hardware experiment or computational or learning advantage is demonstrated; establishing such an advantage remains open.
We extend the quantum-feature kernel framework, which relies on measurements of graph-dependent observables, along three directions. First, leveraging neutral-atom quantum processing units (QPUs), we introduce a scheme that incorporates attributed graphs by embedding edge features into atomic positions and node features into local detuning fields of a Rydberg Hamiltonian. We demonstrate both theoretically and empirically that local detuning enhances kernel expressiveness. Second, in addition to the existing quantum evolution kernel (QEK), which uses global observables, we propose the generalized-distance quantum-correlation (GDQC) kernel, based on local observables. While the two kernels show comparable performance, we show that GDQC can achieve higher expressiveness. Third, instead of restricting to observables at single time steps, we combine information from multiple stages of the quantum evolution via pooling operations. Using extensive simulations on two molecular benchmark datasets, MUTAG and PTC\_FM, we find: (a) QEK and GDQC perform competitively with leading classical algorithms; and (b) pooling further improves performance, enabling quantum-feature kernels to surpass classical baselines. These results show that node-feature embedding and kernel designs based on local observables advance quantum-enhanced graph machine learning on neutral-atom devices.
Neutral atom platforms are analogue quantum simulators that offer the possibility to map graphs onto a 2D qubit register using programmable Rubidium atoms arrays, whose valence electrons' energy state is used as qubits, using optical tweezers. This makes it possible to implement algorithms for solving graph combinatorial optimization and Quantum Machine Learning (QML) tasks, such as graph classification. However, the restrictions of real hardware, as well as the very low number of publicly available machines, make such implementation non-trivial. In this work, we manage to compute the Quantum Evolution Kernel (QEK) to extract the features from graphs of the PROTEINS dataset using the 256-qubits Aquila platform (available through AWS) and then we apply classical Machine Learning (ML) techniques for the final classification. The method is benchmarked against classical kernels, resulting in slightly better performance, proving the effectiveness of the method, even in the case of a noisy quantum simulator.
Neutral-atom quantum processors can embed molecular graphs natively through the geometry of atom arrays, which makes them a natural platform for graph-based quantum kernels. Existing quantum evolution kernels, however, encode limited chemical information and have been applied to molecular classification but not to regression. Here we introduce ChemQEK, a quantum evolution kernel framework for molecular property prediction on analog neutral-atom quantum processors. ChemQEK encodes atom-specific descriptors through local addressability and atom-pair London dispersion coefficients (C6ijC^{ij}_6C6ij​) into the parameters of the Rydberg Hamiltonian, and it combines global, local and pairwise observables of the evolved state within a single kernel. We further introduce kernel pooling strategies that combine information across evolution times and addressability schemes. Using noiseless emulation, we evaluate ChemQEK with kernel-based regression models on the ESOL, FreeSolv, Jean-Claude Bradley Open Melting Point, and QM9 datasets. Pooling over both evolution times and addressability schemes outperforms pooling over either alone and yields test R2R^2R2 values of 0.90, 0.84, and 0.69 for ESOL, FreeSolv, and melting point, respectively. On QM9, ChemQEK outperforms the quantum evolution kernel and generalized-distance quantum-correlation frameworks, each of which relies on a single observable type, for all eight properties considered. The QM9 experiments also reveal property dependent trade-offs between predictive performance and the number of quantum feature configurations, with up to $\sim$79\% fewer measurements retaining competitive performance for several properties. These results highlight the importance of chemically informed encoding, complementary observables, and multidimensional kernel pooling for quantum kernel-based molecular property prediction.
Neutral-atom quantum devices offer a natural and powerful platform for Quantum Reservoir Computing (QRC), a non-variational approach to quantum-enhanced machine learning that is attracting growing interest in the Noisy Intermediate-Scale Quantum (NISQ) era. In this work, we implement a QRC-based learning model tailored to Pasqal neutral-atom hardware, where classical data are encoded into time-dependent detuning waveforms and processed through programmable many-body dynamics. Feature embeddings are extracted from single- and two-qubit Pauli-ZZZ observables and used within a simple linear readout model. We systematically investigate both global and local detuning encoding strategies on a supervised image classification task, benchmarking performance against a purely classical linear baseline. Our results show that processing the data through the quantum reservoir yields a consistent $\sim$4\% improvement in accuracy, highlighting the system effectiveness as a nonlinear feature map. Both encoding strategies exhibit comparable performance, suggesting that QRC can leverage different control schemes while remaining compatible with near-term and emerging hardware capabilities. These findings provide concrete evidence that QRC can enhance classical machine learning pipelines by injecting non-classical correlations without the need for variational optimization, thereby avoiding issues such as barren plateaus and training instabilities. More broadly, this work establishes neutral-atom platforms as a promising and scalable setting for QRC, opening the way toward practical quantum-enhanced learning on near-term devices.
We present our work on effectively representing unit-disk graphs on the registers of neutral atom quantum machines. Specifically, we aimed to embed graphs corresponding to proteins and cellular antenna networks into unit-disk graphs, ensuring compatibility with the registers of two real QPUs: Orion Alpha by PASQAL and Aquila by QuEra. To address machine-specific constraints, we made adjustments and integrated Distance Encoder Networks (DEN) from our previous work. Despite these challenges, we successfully embedded up to 76% of protein-representing graphs for a quantum machine learning classification task on the Aquila QPU, and all subgraphs derived from 90 antenna geographical positions in Turin, Italy, on the Orion Alpha QPU. In the latter case, the graphs represented instances of the graph coloring problem, which we tackled using the hybrid quantum-classical algorithm BBQ-mIS. These promising results underscore the effectiveness and versatility of our embedding approach for representing unit-disk graphs on neutral atom quantum computers across diverse applications.
Graph kernels are essential for learning the properties of graph data, a fundamental task in the analysis of such data. However, a major limitation of current graph kernel methods is their high computational cost, which becomes prohibitive when dealing with large-scale graphs. In order to address this bottleneck, we propose a quantum algorithm designed to analyze the intrinsic structural information within graph data through an efficient quantum kernel method. The core idea of our kernel method involves encoding pertinent information from graphs into quantum states, utilizing quantum kernel functions to represent the similarities among various graphs. This process is facilitated through the application of quantum walks and quantum signal processing techniques. Building upon this framework, we propose a quantum kernel ridge regression algorithm that consists of two key steps. First, we employ our quantum kernel method to prepare a quantum state, in which the amplitudes encode the kernel functions. Second, we implement quantum feature mapping in parallel to encode the corresponding kernel matrix into the quantum circuit. Crucially, we demonstrate that the computational complexity of our regression algorithm scales primarily as O(M3/2)O({M}^{3/2})O(M3/2) with respect to the size of the graph set MMM. This suggests that our quantum kernel method could process graph data with resource requirements scaling approximately as O(polylog(N))O(\text{poly}log(N))O(polylog(N)), where NNN denotes the number of nodes in the graph. Accordingly, this underscores the advantage of our approach over classical methods in the context of large-scale graph analysis. To validate our approach, we conduct numerical experiments on chemical molecular datasets, demonstrating the method's effectiveness and advantages. In summary, this work represents a significant advancement in quantum graph learning, enhancing its potential for analyzing large-scale graph data.