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arXiv:2610.04068

Interaction-Aware Embedding Optimization for Neutral-Atom Quantum Processors

Clément de Terrasson de Montleau, Victor Drouin-Touchette, Wesley Coelho

quant-phmath.OCSubmitted Oct 2, 2026• Announced Oct 6, 2026• 0 citations
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Abstract

Neutral atom-based quantum computers have the ability to dynamically reshape the qubit register geometry between experimental runs. This capability enables different types of problems to be mapped directly onto the hardware, significantly enhancing the efficiency of solving, for instance, complex optimization and machine learning use-cases. However, this flexibility requires finding atom positions to implement target pairwise interactions, inducing a difficult nonconvex optimization for setting up the quantum machine. In this work, we introduce a new force-directed method that targets interactions to encode the input problem on the quantum computer. Numerical results show that our new method can improve embedding feasibility and solution quality by orders of magnitude, and remains reliable on the largest instances.

Comments
7 pages, 3 figures

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Neutral atom-based quantum computers have the ability to dynamically reshape the qubit register geometry between experimental runs. This capability enables different types of problems to be mapped directly onto the hardware, significantly enhancing the efficiency of solving, for instance, complex optimization and machine learning use-cases. However, this flexibility requires finding atom positions to implement target pairwise interactions, inducing a difficult nonconvex optimization for setting up the quantum machine. In this work, we introduce a new force-directed method that targets interactions to encode the input problem on the quantum computer. Numerical results show that our new method can improve embedding feasibility and solution quality by orders of magnitude, and remains reliable on the largest instances.
Quantum computing has quickly emerged as a revolutionary paradigm that holds the potential for greatly enhanced computational capability and algorithmic efficiency, in a wide range of areas. Among the various hardware platforms, neutral atom quantum processors based on Rydberg interactions are gaining increasing interest because of their scalability, qubit-connection flexibility, and intrinsic appropriateness for solving combinatorial optimization challenges. This paper provides an overview of the present capabilities, standards, and applications of neutral atom quantum computers. We first discuss recent hardware advancements and register mapping optimization techniques that enhance circuit fidelity and performance. We next review their uses as quantum simulators, in both classical and quantum hard problems, such as MIS and QUBO problems, quantum many-body models and molecules in chemistry and pharmacology. Applications for enhancing machine learning are also covered.
Neutral atoms trapped in configurable tweezer arrays are a promising platform for solving hard optimization problems. While such platforms natively embed unit-disk maximum weight independent set (UD-MWIS) problems, general problem classes require an embedding that maps them onto UD-MWIS instances. Implementing the necessary asymmetric weights has so far required local control of detunings at each atom. Here, we demonstrate quantum optimization using strictly global driving fields, eliminating the need for local field control. Instead, to effectively implement the required local detunings we exploit weak Rydberg interactions---too weak to generate Rydberg blockade but strong enough to effectively induce the required local detunings. For this, we introduce the concept of precisely placed anchor atoms that impose controlled energy shifts on nearby atoms which can be effectively considered as induced local detunings. We demonstrate that parity-architecture-based neutral atom embeddings of general optimization problems allow for a successful anchor placement strategy, such that all demanded local fields can be replaced by anchors. We experimentally demonstrate this concept on a Pasqal Orion Alpha machine and benchmark all standard building blocks. Finally, we solve quadratic unconstrained binary optimization (QUBO) problems on four-node all-to-all connected graphs embedded in a 43-atom array using seven precisely-placed anchor atoms. By removing the requirement for local addressing, our work overcomes a major experimental bottleneck in solving optimization problems on neutral-atom quantum hardware and can be readily integrated into existing platforms.
Quantum machines are among the most promising technologies expected to provide significant improvements in the following years. However, bridging the gap between real-world applications and their implementation on quantum hardware is still a complicated task. One of the main challenges is to represent through qubits (i.e., the basic units of quantum information) the problems of interest. According to the specific technology underlying the quantum machine, it is necessary to implement a proper representation strategy, generally referred to as embedding. This paper introduces a neural-enhanced optimization framework to solve the constrained unit disk problem, which arises in the context of qubits positioning for neutral atoms-based quantum hardware. The proposed approach involves a modified autoencoder model, i.e., the Distances Encoder Network, and a custom loss, i.e., the Embedding Loss Function, respectively, to compute Euclidean distances and model the optimization constraints. The core idea behind this design relies on the capability of neural networks to approximate non-linear transformations to make the Distances Encoder Network learn the spatial transformation that maps initial non-feasible solutions of the constrained unit disk problem into feasible ones. The proposed approach outperforms classical solvers, given fixed comparable computation times, and paves the way to address other optimization problems through a similar strategy.
Neutral atom quantum computers (NAQC) are emerging as a promising, scalable quantum computing platform because of their long qubit coherence, flexible qubit arrangement, and multiqubit gate capabilities. However, circuit execution often requires physically moving qubits, making compilation a critical optimization challenge. We propose a circuit independent mathematical framework built on graph-theoretic combinatorial optimization that determines the minimal number of required qubit transfers. This model captures spatial constraints specific to NAQC platforms with zone-limited gate operations and multi-qubit gates. From this framework, we encode the qubit mapping problem as a nonlinear integer program and solve it using a genetic algorithm, enabling trade-offs between minimizing the total traveled distance and the number of parallel transfer operations. Compared to the state-of-the-art scalable compiler for zoned architectures, our approach consistently finds fewer transfers. Depending on the optimization focus, our method produces shorter traveled distances or fewer parallel transfer operations. This work provides both theoretical guaranties and a practical tool for efficient, architecture-aware quantum circuit compilation. As a result, practitioners can generate hardware-aware mappings that reduce movement-induced errors and better exploit atom transfer parallelism, directly improving execution efficiency on NAQC devices.
On neutral atom platforms, preparing specific quantum states is usually achieved by pulse shaping, i.e., by optimizing the time-dependence of the Hamiltonian related to the system. This process can be extremely costly, as it requires sampling of the final state in the quantum processor many times. Hence, determining a good pulse, as well as a good embedding, to solve specific combinatorial graph problems is one of the most important bottlenecks of the analog approach. In this work, we propose a novel protocol for solving hard combinatorial graph problems that combines variational analog quantum computing and machine learning. Our numerical simulations show that the proposed protocol can reduce dramatically the number of iterations to be run on the quantum device. Finally, we assess the quality of the proposed approach by estimating the related Q-score, a recently proposed metric aimed at benchmarking QPUs.
In recent years, neutral atom-based quantum computation has been established as a competing alternative for the realization of fault-tolerant quantum computation. However, as with other quantum technologies, various sources of noise limit their performance. With processors continuing to scale up, new techniques are needed to characterize and compare them in order to track their progress. In this work, we present two systematic benchmarks that evaluate these quantum processors at scale. We use the quantum adiabatic algorithm (QAA) and the quantum approximate optimization algorithm (QAOA) to solve maximal independent set (MIS) instances of random unit-disk graphs. These benchmarks are scalable, relying not on prior knowledge of the system's evolution but on the quality of the MIS solutions obtained. Rather than isolating individual sources of noise, they provide an application-level figure of merit: improvements in a QPU and its implementation of the protocols should be reflected in higher-quality MIS solutions. We benchmark quera_aquila and pasqal_fresnel on problem sizes up to 102 and 85 qubits, respectively. Overall, quera_aquila performs better on QAOA and QAA instances. Finally, we generate MIS instances of up to 1000 qubits, providing scalable benchmarks for evaluating future, larger processors as they become available. The proposed protocols can therefore serve as a common reference for comparisons, allowing future work to assess whether advances in hardware translate into measurable improvements in MIS solution quality.