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arXiv:2608.23423

Environmental Control Extends Beyond Quantum Dephasing in Exciton Energy Transfer

Junhua Zhou, Tianrui Chen, Dehao Yuan, Enhu He, Vandana Tiwari, Maxim Gelin, Francoise Remacle, R. J. Dwayne Miller, Fulu Zheng, Ajay Jha, Hong-Guang Duan

physics.chem-phcond-mat.softquant-phSubmitted Aug 24, 2026• Announced Aug 25, 2026
arXivHTMLPDF

Abstract

Excitation-energy transfer underpins the conversion of light into usable energy in photosynthetic organisms and serves as a paradigm for evolutionary optimized transport in open quantum systems. Although this process is often described as incoherent thermally assisted hopping, such descriptions become inadequate when electronic coupling, vibronic interactions and environmental fluctuations occur on comparable energy scales. Determining how the environment controls transport therefore remains a fundamental challenge. Here, we use temperature-dependent 2DES to investigate energy transfer in the photosynthetic antenna protein allophycocyanin over the range 10 - 296 K. The dominant $β\rightarrow α$ transfer step exhibits a pronounced non-monotonic temperature dependence: the transfer time decreases from 400 fs at 10 K to 200 fs near 30- 40 K before increasing again to 400 fs at 296 K. In contrast, the homogeneous optical dephasing time decreases monotonically across the same temperature range. To interpret these observations, we model APC as a vibronically coupled excitonic dimer interacting with a structured environment and solve the dynamics using hierarchical equations of motion. Conventional fixed-bath models, including Drude-Lorentz and explicit intermolecular-mode spectral densities, fail to reproduce the observed turnover. Quantitative agreement is obtained only when the low-frequency sector of the environmental spectral density is allowed to anharmonically evolve strongly with temperature, while the high-frequency bath remains essentially unchanged. More broadly, these findings demonstrate that transport efficiency is controlled not simply by the magnitude of environmental fluctuations, but by the distribution of environmental spectral weight across frequency space, providing new experimental constraints on theories of molecular transport in complex quantum environments.

Related papers

Molecular Dynamics-Derived Coloured Noise Mediates Anderson Localisation and Environment-Assisted Transport of Tryptophan Excitons in Tubulin

Chen Xin

The tryptophan residues in tubulin $αβ$-dimers form an ordered aromatic network that has been proposed to support quantum exciton transport even under physiological environmental noise. Existing studies of this system mostly assume white-noise dephasing, but the statistical properties of the protein-solvent bath coupled to tryptophan sites remain uncharacterised under physiological conditions. Here we characterise this fluctuation bath via all-atom molecular dynamics simulations of a solvated tubulin dimer at 310 K, combining high-frequency and long-time trajectories with 10 fs and 10 ps sampling intervals. The resulting autocorrelation of the site-energy fluctuations is tri-exponential, with three well-separated decay modes: sub-100-fs and picosecond fluctuations driven by water dynamics, and a nanosecond mode originating from protein conformational rearrangements. All three modes fall deep within the non-Markovian regime. We further demonstrate that the slow protein mode introduces strong quasi-static disorder, which results in Anderson localisation, while the two fast water modes frequently tune chromophore pairs through resonance, enabling environment-assisted quantum transport (ENAQT). On the full eight-site network, the coloured-noise bath confines excitons predominantly to strongly coupled proximal tryptophan pairs, in marked contrast to the more uniform delocalisation predicted by the standard white-noise Haken-Strobl model. Our workflow generalises to other pigment-protein systems with solvent-exposed chromophores.

cond-mat.softCross-listedarXiv:2607.11135•Jul 14, 2026

Simulating photosynthetic energy transport on a photonic network

Hao Long Tang, Xiao-Wen Shang, Zi-Yu Shi +11 more

Abstract Quantum effects in photosynthetic energy transport in nature, especially for the typical Fenna-Matthews-Olson (FMO) complexes, are extensively studied in quantum biology. Such energy transport processes can be investigated as open quantum systems that blend the quantum coherence and environmental noise, and have been experimentally simulated on a few quantum devices. However, the existing experiments always lack a solid quantum simulation for the FMO energy transport due to their constraints to map a variety of issues in actual FMO complexes that have rich biological meanings. Here we successfully map the full coupling profile of the seven-site FMO structure by comprehensive characterisation and precise control of the evanescent coupling of the three-dimensional waveguide array. By applying a stochastic dynamical modulation on each waveguide, we introduce the base site energy and the dephasing term in coloured noise to faithfully simulate the power spectral density of the FMO complexes. We show our photonic model well interprets the phenomena including reorganisation energy, vibrational assistance, exciton transfer and energy localisation. We further experimentally demonstrate the existence of an optimal transport efficiency at certain dephasing strength, providing a window to closely investigate environment-assisted quantum transport.

arXiv:2311.02020•npj Quantum Information•Mar 11, 2024•14 citations

Time-resolved role of coherence and delocalization in photosynthetic energy transfer from an extended exciton model

Jingyu Liu, Tao-Yuan Du

Photosynthetic antenna complexes achieve high quantum efficiency through exciton transport in coupled pigment networks. Conventional Frenkel-exciton models treat each chromophore as a structureless site and neglect internal electronic degrees of freedom that can influence coherence and delocalization. Here we develop an extended excitonic network model that preserves the pigment-pigment coupling topology while introducing tunable intrachromophoric electronic mixing within the single-excitation manifold. Using a Lindblad open-quantum-system framework, we quantify coherence, delocalization, and trapping efficiency across parameter space. We show that intrachromophoric mixing plays a time-dependent role: enhanced mixing on the antenna side promotes short-time coherent delocalization and improves excitation injection, whereas excessive mixing near the trapping site induces persistent delocalization and suppresses transfer efficiency. Simulated two-dimensional electronic spectra reveal enhanced cross peaks and systematic blue shifts, providing spectroscopic signatures of coherence-modulated transport. These results establish a microscopic connection between internal electronic structure and quantum transport performance in excitonic networks.

physics.opticsCross-listedarXiv:2603.29132•Apr 1, 2026

Quantum Correlation and Synchronisation-Enhanced Energy Transfer in Driven-Dissipative Light-Harvesting Dimers

Wenhao Xu

Quantum synchronisation has recently been proposed as a mechanism for electronic excitation energy transfer in light-harvesting complexes, yet its robustness in driven-dissipative settings remains under active investigation. Here, we revisit this mechanism in cryptophyte photosynthetic antennae using an exciton--vibrational dimer model. By comparing the full open quantum dynamics with semi-classical rate equations for electronic density-matrix elements and vibrational observables, we demonstrate that quantum correlations between electronic and vibrational degrees of freedom, beyond the semi-classical factorised limit, underpin the emergence of quantum synchronisation. Furthermore, we introduce an environment-assisted transfer mechanism arising as a nonlinear, non-Condon correction to the dipole--dipole interaction. This mechanism enables long-lived quantum coherence and continuous, synchronisation-enhanced energy transfer in a driven-dissipative regime, thereby suggesting new avenues for investigating photosynthetic energy-transfer dynamics.

physics.bio-phCross-listedarXiv:2512.12660•Dec 16, 2025

Trajectory-based computational analysis of the quantum–classical transition in asymmetrically coupled spin–boson models

Teerapat Uthailiang, Purin Issarakul, S. Boonchui

Understanding how quantum coherence is regulated by structured environments is essential for elucidating energy-transfer mechanisms in photosynthetic light-harvesting complexes. In this work, we present a trajectory-based computational analysis of the quantum-classical transition in asymmetrically coupled spin-boson models, motivated by exciton-phonon interactions in the phycobiliprotein PC645 complex. The model captures site-dependent environmental coupling that mimics pigment-specific dissipation pathways in biological systems. We employ three complementary approaches: a Redfield master equation in the Bloch-vector representation, numerically exact hierarchical equations of motion (HEOM), and a stochastic Schrödinger equation that generates ensembles of quantum trajectories. Within the stochastic framework, environmental backaction is interpreted as a continuous measurement process, giving rise to a time-dependent dynamical corridor on the Bloch sphere. The corridor width provides a quantitative measure of coherence loss and defines the quantum-classical crossover time. Our results show that moderate asymmetric coupling can sustain coherence and enhance directional population transfer, whereas strong coupling rapidly suppresses quantum trajectories. These findings offer mechanistic insight into environmentally assisted energy transfer and coherence regulation in photosynthetic pigment-protein complexes.

Computational and Structural Biotechnology Journal•Jan 1, 2026•1 citation

Selective Vibronic Excitation for Coherent Energy Transport in Photosynthetic and Agrivoltaic Systems

Steve Cabrel Teguia Kouam, Theodore Goumai Vedekoi, Jean-Pierre Tchapet Njafa +2 more

Partitioning the photonic environment into resonant and off-resonant modes provides a mechanism for dephasing suppression in photosynthetic energy transfer. Aligning the excitation spectrum with underdamped vibronic resonances in the Fenna-Matthews-Olson (FMO) complex prepares vibronically dressed states with reduced coupling to dissipative fluctuations, inducing a biexponential coherence decay: a rapid initial dephasing (τfast {\approx} 37fs) followed by persistent inter-band coherences extending beyond 1ps-a > 3x extension of the effective coherence window relative to broadband excitation (τc = 280fs). This improves forward transfer yields by 39% at 295K. PT-HOPS/SBD simulations establish that dual-band filtering at 750nm and 820nm targets vibronic resonances while bypassing dephasing-dominated noise. This enhancement is robust against static disorder (σ = 50 cm-1), with an ensemble-averaged increase of η = 0.39 {\pm} 0.04. These results identify selective vibronic excitation as a foundational design principle for coherence-assisted transport. This framework extends to symbiotic agrivoltaic systems, where organic photovoltaics function as active spectral filters to co-optimize excitonic transport alongside the photosynthetic requirements of underlying crops.

quant-pharXiv:2603.04097•Mar 5, 2026
Excitation-energy transfer underpins the conversion of light into usable energy in photosynthetic organisms and serves as a paradigm for evolutionary optimized transport in open quantum systems. Although this process is often described as incoherent thermally assisted hopping, such descriptions become inadequate when electronic coupling, vibronic interactions and environmental fluctuations occur on comparable energy scales. Determining how the environment controls transport therefore remains a fundamental challenge. Here, we use temperature-dependent 2DES to investigate energy transfer in the photosynthetic antenna protein allophycocyanin over the range 10 - 296 K. The dominant β→αβ\rightarrow αβ→α transfer step exhibits a pronounced non-monotonic temperature dependence: the transfer time decreases from 400 fs at 10 K to 200 fs near 30- 40 K before increasing again to 400 fs at 296 K. In contrast, the homogeneous optical dephasing time decreases monotonically across the same temperature range. To interpret these observations, we model APC as a vibronically coupled excitonic dimer interacting with a structured environment and solve the dynamics using hierarchical equations of motion. Conventional fixed-bath models, including Drude-Lorentz and explicit intermolecular-mode spectral densities, fail to reproduce the observed turnover. Quantitative agreement is obtained only when the low-frequency sector of the environmental spectral density is allowed to anharmonically evolve strongly with temperature, while the high-frequency bath remains essentially unchanged. More broadly, these findings demonstrate that transport efficiency is controlled not simply by the magnitude of environmental fluctuations, but by the distribution of environmental spectral weight across frequency space, providing new experimental constraints on theories of molecular transport in complex quantum environments.
The tryptophan residues in tubulin αβαβαβ-dimers form an ordered aromatic network that has been proposed to support quantum exciton transport even under physiological environmental noise. Existing studies of this system mostly assume white-noise dephasing, but the statistical properties of the protein-solvent bath coupled to tryptophan sites remain uncharacterised under physiological conditions. Here we characterise this fluctuation bath via all-atom molecular dynamics simulations of a solvated tubulin dimer at 310 K, combining high-frequency and long-time trajectories with 10 fs and 10 ps sampling intervals. The resulting autocorrelation of the site-energy fluctuations is tri-exponential, with three well-separated decay modes: sub-100-fs and picosecond fluctuations driven by water dynamics, and a nanosecond mode originating from protein conformational rearrangements. All three modes fall deep within the non-Markovian regime. We further demonstrate that the slow protein mode introduces strong quasi-static disorder, which results in Anderson localisation, while the two fast water modes frequently tune chromophore pairs through resonance, enabling environment-assisted quantum transport (ENAQT). On the full eight-site network, the coloured-noise bath confines excitons predominantly to strongly coupled proximal tryptophan pairs, in marked contrast to the more uniform delocalisation predicted by the standard white-noise Haken-Strobl model. Our workflow generalises to other pigment-protein systems with solvent-exposed chromophores.
Abstract Quantum effects in photosynthetic energy transport in nature, especially for the typical Fenna-Matthews-Olson (FMO) complexes, are extensively studied in quantum biology. Such energy transport processes can be investigated as open quantum systems that blend the quantum coherence and environmental noise, and have been experimentally simulated on a few quantum devices. However, the existing experiments always lack a solid quantum simulation for the FMO energy transport due to their constraints to map a variety of issues in actual FMO complexes that have rich biological meanings. Here we successfully map the full coupling profile of the seven-site FMO structure by comprehensive characterisation and precise control of the evanescent coupling of the three-dimensional waveguide array. By applying a stochastic dynamical modulation on each waveguide, we introduce the base site energy and the dephasing term in coloured noise to faithfully simulate the power spectral density of the FMO complexes. We show our photonic model well interprets the phenomena including reorganisation energy, vibrational assistance, exciton transfer and energy localisation. We further experimentally demonstrate the existence of an optimal transport efficiency at certain dephasing strength, providing a window to closely investigate environment-assisted quantum transport.
Photosynthetic antenna complexes achieve high quantum efficiency through exciton transport in coupled pigment networks. Conventional Frenkel-exciton models treat each chromophore as a structureless site and neglect internal electronic degrees of freedom that can influence coherence and delocalization. Here we develop an extended excitonic network model that preserves the pigment-pigment coupling topology while introducing tunable intrachromophoric electronic mixing within the single-excitation manifold. Using a Lindblad open-quantum-system framework, we quantify coherence, delocalization, and trapping efficiency across parameter space. We show that intrachromophoric mixing plays a time-dependent role: enhanced mixing on the antenna side promotes short-time coherent delocalization and improves excitation injection, whereas excessive mixing near the trapping site induces persistent delocalization and suppresses transfer efficiency. Simulated two-dimensional electronic spectra reveal enhanced cross peaks and systematic blue shifts, providing spectroscopic signatures of coherence-modulated transport. These results establish a microscopic connection between internal electronic structure and quantum transport performance in excitonic networks.
Quantum synchronisation has recently been proposed as a mechanism for electronic excitation energy transfer in light-harvesting complexes, yet its robustness in driven-dissipative settings remains under active investigation. Here, we revisit this mechanism in cryptophyte photosynthetic antennae using an exciton--vibrational dimer model. By comparing the full open quantum dynamics with semi-classical rate equations for electronic density-matrix elements and vibrational observables, we demonstrate that quantum correlations between electronic and vibrational degrees of freedom, beyond the semi-classical factorised limit, underpin the emergence of quantum synchronisation. Furthermore, we introduce an environment-assisted transfer mechanism arising as a nonlinear, non-Condon correction to the dipole--dipole interaction. This mechanism enables long-lived quantum coherence and continuous, synchronisation-enhanced energy transfer in a driven-dissipative regime, thereby suggesting new avenues for investigating photosynthetic energy-transfer dynamics.
Understanding how quantum coherence is regulated by structured environments is essential for elucidating energy-transfer mechanisms in photosynthetic light-harvesting complexes. In this work, we present a trajectory-based computational analysis of the quantum-classical transition in asymmetrically coupled spin-boson models, motivated by exciton-phonon interactions in the phycobiliprotein PC645 complex. The model captures site-dependent environmental coupling that mimics pigment-specific dissipation pathways in biological systems. We employ three complementary approaches: a Redfield master equation in the Bloch-vector representation, numerically exact hierarchical equations of motion (HEOM), and a stochastic Schrödinger equation that generates ensembles of quantum trajectories. Within the stochastic framework, environmental backaction is interpreted as a continuous measurement process, giving rise to a time-dependent dynamical corridor on the Bloch sphere. The corridor width provides a quantitative measure of coherence loss and defines the quantum-classical crossover time. Our results show that moderate asymmetric coupling can sustain coherence and enhance directional population transfer, whereas strong coupling rapidly suppresses quantum trajectories. These findings offer mechanistic insight into environmentally assisted energy transfer and coherence regulation in photosynthetic pigment-protein complexes.
Partitioning the photonic environment into resonant and off-resonant modes provides a mechanism for dephasing suppression in photosynthetic energy transfer. Aligning the excitation spectrum with underdamped vibronic resonances in the Fenna-Matthews-Olson (FMO) complex prepares vibronically dressed states with reduced coupling to dissipative fluctuations, inducing a biexponential coherence decay: a rapid initial dephasing (τfast {\approx} 37fs) followed by persistent inter-band coherences extending beyond 1ps-a > 3x extension of the effective coherence window relative to broadband excitation (τc = 280fs). This improves forward transfer yields by 39% at 295K. PT-HOPS/SBD simulations establish that dual-band filtering at 750nm and 820nm targets vibronic resonances while bypassing dephasing-dominated noise. This enhancement is robust against static disorder (σ = 50 cm-1), with an ensemble-averaged increase of η = 0.39 {\pm} 0.04. These results identify selective vibronic excitation as a foundational design principle for coherence-assisted transport. This framework extends to symbiotic agrivoltaic systems, where organic photovoltaics function as active spectral filters to co-optimize excitonic transport alongside the photosynthetic requirements of underlying crops.