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arXiv:2608.15577

Qutrit-Native Spatial-Orbital Encoding for Resource-Efficient Quantum Chemistry Simulation

Sumin Lim

quant-phSubmitted Aug 16, 2026• Announced Aug 18, 2026• 0 citations
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Abstract

Additional levels in a qudit can serve as more than extra computational capacity and can represent physically relevant correlations when the algorithmic design reflects the underlying physics of the problem. We demonstrate this principle for quantum chemistry simulation using a qutrit-native spatial-orbital encoding, where $|0\rangle$, $|1\rangle$, and $|2\rangle$ denote orbital occupation states. We establish a qutrit simulation framework that combines number-conserving pair-transfer and broken-pair generators with a projected-Hamiltonian energy estimator constructed from qutrit populations and coherences. Benchmarks for H$_2$, LiH, and H$_2$O show that the encoding reproduces the relevant potential-energy curves, while retaining a compact quantum resource structure. Direct comparison with the pair-only restriction confirms that the third level reduces errors by tens of mHa in LiH and by more than 100 mHa in H$_2$O. Despite a partial spin-coupling truncation in the compact H$_2$O encoding, the resulting energy curve deviates from FCI by only a few mHa over the tested range. Compared with a conventional qubit-based UCCSD approach, the qutrit scheme requires half as many quantum units and reduces the scaling of the parameterized ansatz generator count from $O(M^4)$ to $O(M^2)$, where $M$ is the number of spatial orbitals. This work elucidates how a physically motivated qutrit encoding can reduce quantum-resource requirements while retaining controlled electronic-structure accuracy, thereby providing a concrete starting point for broader qudit-native quantum algorithm design.

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Science Advances•Oct 23, 2024•26 citations
Additional levels in a qudit can serve as more than extra computational capacity and can represent physically relevant correlations when the algorithmic design reflects the underlying physics of the problem. We demonstrate this principle for quantum chemistry simulation using a qutrit-native spatial-orbital encoding, where ∣0⟩|0\rangle∣0⟩, ∣1⟩|1\rangle∣1⟩, and ∣2⟩|2\rangle∣2⟩ denote orbital occupation states. We establish a qutrit simulation framework that combines number-conserving pair-transfer and broken-pair generators with a projected-Hamiltonian energy estimator constructed from qutrit populations and coherences. Benchmarks for H2_22​, LiH, and H2_22​O show that the encoding reproduces the relevant potential-energy curves, while retaining a compact quantum resource structure. Direct comparison with the pair-only restriction confirms that the third level reduces errors by tens of mHa in LiH and by more than 100 mHa in H2_22​O. Despite a partial spin-coupling truncation in the compact H2_22​O encoding, the resulting energy curve deviates from FCI by only a few mHa over the tested range. Compared with a conventional qubit-based UCCSD approach, the qutrit scheme requires half as many quantum units and reduces the scaling of the parameterized ansatz generator count from O(M4)O(M^4)O(M4) to O(M2)O(M^2)O(M2), where MMM is the number of spatial orbitals. This work elucidates how a physically motivated qutrit encoding can reduce quantum-resource requirements while retaining controlled electronic-structure accuracy, thereby providing a concrete starting point for broader qudit-native quantum algorithm design.
Simulation of electronic structure is one of the most promising applications on noisy intermediate-scale quantum (NISQ) era devices. However, NISQ devices suffer from a number of challenges like limited qubit connectivity, short coherence times, and sizable gate error rates. Thus, desired quantum algorithms should require shallow circuit depths and low qubit counts to take advantage of these devices. Here, we attempt to reduce quantum resource requirements for molecular simulations on a quantum computer while maintaining the desired accuracy with the help of classical quantum chemical theories of canonical transformation and explicit correlation. In this work, compact ab initio Hamiltonians are generated classically, in the second quantized form, through an approximate similarity transformation of the Hamiltonian with (a) an explicitly correlated two-body unitary operator with generalized pair excitations that remove the Coulombic electron-electron singularities from the Hamiltonian and (b) a unitary one-body operator to efficiently capture the orbital relaxation effects required for accurate description of the excited states. The resulting transcorrelated Hamiltonians are able to describe both the ground and the excited states of molecular systems in a balanced manner. Using the variational quantum eigensolver (VQE) method based on the unitary coupled cluster with singles and doubles (UCCSD) ansatz and only a minimal basis set (ANO-RCC-MB), we demonstrate that the transcorrelated Hamiltonians can produce ground state energies comparable to the reference CCSD energies with the much larger cc-pVTZ basis set. This leads to a reduction in the number of required CNOT gates by more than 3 orders of magnitude for the chemical species studied in this work. Furthermore, using the quantum equation of motion (qEOM) formalism in conjunction with the transcorrelated Hamiltonian, we are able to reduce the deviations in the excitation energies from the reference EOM-CCSD/cc-pVTZ values by an order of magnitude. The transcorrelated Hamiltonians developed here are Hermitian and contain only one- and two-body interaction terms and thus can be easily combined with any quantum algorithm for accurate electronic structure simulations.
With quantum computers on the horizon, it is essential to understand what problems they can be used to solve. One potential application is simulating quantum systems, in particular, systems with many interacting electrons. However, there is a disparity between the computational resources required to study these problems and the capabilities of modern experimental quantum devices. In this thesis, we make progress toward closing this gap by reducing the cost of quantum simulation of quantum chemistry on a number of fronts. In the first half, we develop three improved quantum simulation algorithms by approximating time evolution under the Hamiltonian using a truncated Taylor series rather than the Trotter-Suzuki decomposition. We do this first for the molecular electronic structure Hamiltonian in two representations, obtaining asymptotic improvements in terms of both the number of orbitals and the required precision. We also apply the truncated Taylor series paradigm to quantum simulation in real space, where we consider simulation of general wave functions discretized on a uniform grid. In the second half, by working with Hamiltonians tailored specifically to quantum algorithms, we demonstrate that Trotter steps of the electronic structure Hamiltonian can be simulated in exactly N depth and with only linear connectivity, where N is the number of spin-orbitals. This resolves the problem of non-locality in fermion-to-qubit mappings, and has wide-ranging applications for variational and phase estimation-based quantum simulation of quantum chemistry. We further study this algorithm on an error-corrected quantum computer using the surface code. Benchmarking it alongside other product formula approaches, we show that quantum simulation of scientifically important instances of the electronic structure problem that are classically intractable can be performed with only a few hundred thousand physical qubits and fewer than one billion costly fault-tolerant gates. Finally, we study the effect of using randomized Hamiltonians in iterative phase estimation, and how this allows us to reduce the costs of simulation as well as to exploit knowledge of the ground state in how we design our simulation algorithm.
Quantum computation is one of the most promising new paradigms for the simulation of physical systems composed of electrons and atomic nuclei, with applications in chemistry, solid-state physics, materials science, and molecular biology. This requires a truncated representation of the electronic structure Hamiltonian using a finite number of orbitals. While it is, in principle, obvious how to improve on the representation by including more orbitals, this is usually unfeasible in practice (e.g., because of the limited number of qubits available) and severely compromises the accuracy of the obtained results. Here, we propose a quantum algorithm that improves on the representation of the physical problem by virtue of second-order perturbation theory. In particular, our quantum algorithm evaluates the second-order energy correction through a series of time-evolution steps under the unperturbed Hamiltonian. An important application is to go beyond the active-space approximation, allowing to include corrections of virtual orbitals, known as multireference perturbation theory. Here, we exploit the fact that the unperturbed Hamiltonian is diagonal for virtual orbitals and show that the number of qubits is independent of the number of virtual orbitals. This gives rise to more accurate energy estimates without increasing the number of qubits. Moreover, we demonstrate numerically for realistic chemical systems that the total runtime has highly favorable scaling in the number of virtual orbitals compared to previous studies. Numerical calculations confirm the necessity of the multireference perturbation theory energy corrections to reach accurate ground-state energy estimates. Our perturbation theory quantum algorithm can also be applied to symmetry-adapted perturbation theory. As such, we demonstrate that perturbation theory can help to reduce the quantum hardware requirements for quantum chemistry. Published by the American Physical Society 2024
Simulating electronic structure on a quantum computer requires encoding of fermionic systems onto qubits. Common encoding methods transform a fermionic system of NNN spin-orbitals into an NNN-qubit system, but many of the fermionic configurations do not respect the required conditions and symmetries of the system so the qubit Hilbert space in this case may have unphysical states and thus cannot be fully utilized. We propose a generalized qubit-efficient encoding (QEE) scheme that requires the qubit number to be only logarithmic in the number of configurations that satisfy the required conditions and symmetries. For the case of considering only the particle-conserving and singlet configurations, we reduce the qubit count to an upper bound of O(mlog2N)\mathcal{O}(m{log}_{2}N)O(mlog2​N), where mmm is the number of particles. This QEE scheme is demonstrated on an H2{\mathrm{H}}_{2}H2​ molecule in the 6-31G basis set and a LiH\mathrm{LiH}LiH molecule in the STO-3G basis set using fewer qubits than the common encoding methods. We calculate the ground-state energy surfaces using a variational quantum eigensolver algorithm with a hardware-efficient ansatz circuit. We choose to use a hardware-efficient ansatz since most of the Hilbert space in our scheme is spanned by desired configurations so a heuristic search for an eigenstate is sensible. The simulations are performed on IBM Quantum machines and the Qiskit simulator with a noise model implemented from a IBM Quantum machine. Using the methods of measurement error mitigation and error-free linear extrapolation, we demonstrate that most of the distributions of the extrapolated energies using our QEE scheme agree with the exact results obtained by Hamiltonian diagonalization in the given basis sets within chemical accuracy. Our proposed scheme and results show the feasibility of quantum simulations for larger molecular systems in the noisy intermediate-scale quantum (NISQ) era. The number of terms in the Hamiltonian has an upper bound of $\mathcal{O}(\frac{{N}^{2m+1}}{(m\ensuremath{-}1)!\phantom{\rule{0.16em}{0ex}}m!})$ for the QEE scheme while it scales as O(N4)\mathcal{O}({N}^{4})O(N4) for the Jordan-Wigner encoding scheme. Nevertheless, we present several cases where QEE is useful.
We present a library of qubit Hamiltonians for molecular quantum simulation that are structurally sparser than conventional Gaussian-basis alternatives by one to three orders of magnitude. The Hamiltonians are constructed from a spectral graph theory framework (GeoVac) that exploits natural coordinate separations in molecular electronic structure, producing block-diagonal electron repulsion integrals and Gaunt-enforced selection rules that persist through Jordan-Wigner encoding. For the composed architecture (PK-partitioned), the composed LiH Hamiltonian is near parity with minimal-basis STO-3G on Pauli count (334 vs. STO-3G's 276 reduced / 907 raw) while using more qubits; the decisive resource advantages are the O(Q2.5)O(Q^{2.5})O(Q2.5) Pauli scaling and a 190××× reduction versus cc-pVDZ. The balanced coupled architecture (PK-free) binds LiH with an FCI minimum at a computed Req=3.227R_{\mathrm{eq}} = 3.227Req​=3.227 bohr (7.0% above the experimental 3.015 bohr) at nmax⁡=2n_{\max}=2nmax​=2 (878 Pauli terms, 30 qubits); a single-point evaluation at the experimental geometry reaches 0.20% energy error at nmax⁡=3n_{\max}=3nmax​=3 (84 qubits) when solved exactly. Chemistry-accuracy scope at nmax⁡=2n_{\max}=2nmax​=2 is row-conditional: first-row hydrides (LiH, BeH2_22​, H2_22​O, …\ldots…) bind with documented potential-energy-surface (PES) topology, while second-row hydrides (NaH and below) exhibit monotone overattraction under every tested configuration — frozen-core balanced, multi-zeta valence, screened cross-center, explicit-core Hartree–Fock — with no interior PES minimum at the qubit-Hamiltonian level. We document this scope boundary empirically in \S(ref); the framework's primary value proposition is structural sparsity with quantitative truncation-convergence rates (Paper 38 state-space GH convergence), not energy-accuracy parity with CCSD(T) on second-row systems. The hamiltonian() registry covers 37 systems (35 composed molecules spanning Z=1Z=1Z=1–56, H through Ba, plus the He and H2_22​ reference atoms), including multi-center systems (CO, N2_22​, F2_22​), mixed frozen-core molecules (NaCl), and the full first transition series as hydrides (ScH through ZnH), with Pauli scaling O(Q2.5)O(Q^{2.5})O(Q2.5) confirmed universal across all three rows, compared to O(Q3.9–4.3)O(Q^{3.9–4.3})O(Q3.9–4.3) for Gaussian baselines. The composed Pauli count is exactly linear in qubit count (coefficient 11.1011.1011.10, exact, for main-group molecules; 9.239.239.23 for ddd-orbital blocks under the pair-diagonal ERI approximation (Sec. (ref))—the exact global-MLM_LML​ rule makes the ddd-block coefficient higher, not lower), so adding atoms to a molecule increases quantum cost linearly. Second- and third-row molecules use analytical frozen cores ([Ne], [Ar], [Ar]3d10d^{10}d10); the frozen-core energy enters only through the identity operator and does not affect quantum measurement cost. Isostructural molecules with frozen cores produce identical Pauli counts across periodic table rows. The Hamiltonians are available as a Python library with Qiskit, OpenFermion, and PennyLane export. GeoVac Paper 20. Part of the GeoVac research corpus (quantum computing group). Code, tests, and the full paper series: https://github.com/jloutey-hash/geovac. Corpus archive DOI: 10.5281/zenodo.20482394. Corpus version at deposit: v4.75.0.
Solving the electronic structure problem is a notorious challenge in quantum chemistry and material science. Variational quantum eigensolver (VQE) is a promising hybrid classical-quantum algorithm for finding the lowest-energy configuration of a molecular system. However, it typically requires many qubits and quantum gates with substantial quantum circuit depth to accurately represent the electronic wave function of complex structures. Here, we propose an alternative approach to solve the electronic structure problem using VQE with a single qudit. Our approach exploits a high-dimensional orbital angular momentum state of a heralded single photon and notably reduces the required quantum resources compared to conventional multi-qubit–based VQE. We experimentally demonstrate that our single-qudit–based VQE can efficiently estimate the ground state energy of hydrogen (H 2 ) and lithium hydride (LiH) molecular systems corresponding to two- and four-qubit systems, respectively. We believe that our scheme opens a pathway to perform a large-scale quantum simulation for solving more complex problems in quantum chemistry and material science.