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arXiv:2606.26882

Shallow Quantum Circuits for Deep Chemistry via Valence Bond Embeddings

Francisco Javier del Arco Santos, Jakob S. Kottmann

quant-phSubmitted Jun 25, 2026• Announced Jun 26, 2026• 0 citations
arXivHTMLPDF

Abstract

Quantum chemistry is one of the major potential applications in quantum computation. Currently there is a considerable focus on relatively small active spaces as a consequence of hardware noise and exponential bottlenecks in simulations. In the long run, there will be an increasing demand in reliable approximations for larger systems -- both, as initial states for projective algorithms like the quantum phase estimation or for the evaluation of dynamical properties. While numerous approaches to select active spaces and extrapolate basis set accuracy exist, there is currently no consistent approach that results in a single quantum circuit for the total system. In this work, we combine hybrid Fermionic-Bosonic encodings with the structured approach of Quantum Valence Bond Theory to directly construct quantum circuits for comparably large molecular systems. With this approach we are able to push simulability barrier of variational quantum eigensolvers towards chemically relevant systems and demonstrate circuit designs that outperform active space counterparts and achieve good approximations with respect to the exact solutions.

Comments
11 pages, 4 figures

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Quantum chemistry is one of the major potential applications in quantum computation. Currently there is a considerable focus on relatively small active spaces as a consequence of hardware noise and exponential bottlenecks in simulations. In the long run, there will be an increasing demand in reliable approximations for larger systems -- both, as initial states for projective algorithms like the quantum phase estimation or for the evaluation of dynamical properties. While numerous approaches to select active spaces and extrapolate basis set accuracy exist, there is currently no consistent approach that results in a single quantum circuit for the total system. In this work, we combine hybrid Fermionic-Bosonic encodings with the structured approach of Quantum Valence Bond Theory to directly construct quantum circuits for comparably large molecular systems. With this approach we are able to push simulability barrier of variational quantum eigensolvers towards chemically relevant systems and demonstrate circuit designs that outperform active space counterparts and achieve good approximations with respect to the exact solutions.
Scientific simulations demand methods combining scalability with predictive accuracy. Density Functional Theory (DFT) on High-Performance Computing (HPC) enables large-scale electronic-structure simulations but is limited by approximations affecting strongly correlated systems and band-gap predictions. Quantum computing offers a pathway to address this, though current Noisy Intermediate-Scale Quantum (NISQ) hardware remains constrained by qubit resources, noise, and execution cost. This work presents a hybrid DFT-Quantum Embedding (QDFT) framework integrating classical HPC-based DFT with a quantum electronic-structure solver. Large systems are partitioned to isolate a chemically relevant active space, treated via the Variational Quantum Eigensolver (VQE), while the remaining degrees of freedom are described by DFT. The framework incorporates active-space selection, embedded Hamiltonian construction, symmetry preservation, operator mapping, self-consistent density updating, and modular classical-quantum coupling. We focus on noiseless quantum simulation to systematically evaluate accuracy, convergence, active-space dependence, computational cost, and HPC scalability without hardware noise. Detailed profiling identifies computational bottlenecks and highlights limitations of CPU-based quantum simulation. A QPU runtime-estimation methodology is additionally developed to assess execution requirements on actual quantum hardware. Results demonstrate quantum embedding's potential to improve selected electronic-structure properties while retaining classical HPC's scalability. Noisy quantum simulation and QPU execution remain key future directions, providing a pathway toward practical, scalable HPC-quantum hybrid simulations as hardware matures.
We conducted a thorough evaluation of various state-of-the-art strategies to prepare the ground state wavefunction of a system on a quantum computer, specifically within the framework of variational quantum eigensolver (VQE). Despite the advantages of VQE and its variants, the current quantum computational chemistry calculations often provide inaccurate results for larger molecules, mainly due to the polynomial growth in the depth of quantum circuits and the number of two-qubit gates, such as CNOT gates. To alleviate this problem, we aim to design efficient quantum circuits that would outperform the existing ones on the current noisy quantum devices. In this study, we designed a novel quantum circuit that reduces the required circuit depth and number of two-qubit entangling gates by about 60%, while retaining the accuracy of the ground state energies close to the chemical accuracy. Moreover, even in the presence of device noise, these novel shallower circuits yielded substantially low error rates than the existing approaches for predicting the ground state energies of molecules. By considering the umbrella inversion process in ammonia molecule as an example, we demonstrated the advantages of this new approach and estimated the energy barrier for the inversion process.
One of the first practical applications of quantum computers is expected to be molecular modelling. Performing this task would profoundly affect areas such as chemistry, materials science and drug synthesis. Modelling of molecules, which are classically intractable, can be achieved with just over 303030 qubits, whereas state of the art quantum computers already have more than 505050 qubits. The Variational Quantum Eigensolver (VQE) algorithm and VQE based protocols, are promising candidates to enable this task on emerging Noisy Intermediate-Scale Quantum (NISQ) computers. These protocols require short quantum circuits and short coherence times, and are particularly resilient to quantum errors. Nevertheless, there is still a significant gap between the accuracy and the coherence times of current NISQ computers, and the hardware requirements of VQE protocols to simulate practically interesting molecules. In this thesis, I present my contribution to narrowing this gap by developing VQE protocols for molecular modelling that are less demanding on quantum hardware. The VQE relies on the Rayleigh-Ritz variational principle to estimate the eigenvalues of a Hamiltonian operator, by minimizing its expectation value with respect to a trial quantum state, prepared by an ansatz. A major challenge for the practical realisation of VQE protocols on NISQ computers is to construct an ansatz that: (1) can accurately approximate the eigenstates of the Hamiltonian; (2) is easy to optimize; and (3) can be implemented by a shallow circuit, within the capabilities of a NISQ computer. The most widely used, unitary coupled cluster (UCC), type of ans\"atze mathematically correspond to a product of unitary evolutions of fermionic excitation operators. Owing to their fermionic structure, UCC ans\"atze preserve the symmetries of electronic wavefunctions, and thus are accurate and easy to optimize. Nevertheless, UCC ans\"atze are implemented by high depth circuits, which severely limit the size of the molecules that can be reliably simulated on NISQ computers. In this thesis, I begin by constructing efficient quantum circuits to perform evolutions of fermionic excitation operators. The circuits are optimized in the number of two-qubit entangling gates, which are the current bottleneck of NISQ computers. Compared to the standard circuits used to implement evolutions of fermionic excitation operators, the circuits derived in this thesis reduce the number of two-qubit entangling gates by more than 70%70\%70% on average. As an intermediate result, I also derive efficient circuits to perform evolutions of qubit excitation operators (excitation operators that account for qubit, rather than fermionic commutation relations). Even with the fermionic-excitation-evolution circuits derived here, UCC ans\"atze still require very long circuits, with a particularly large number of two-qubit entangling gates. In this thesis, I consider the use of alternative VQE ans\"atze, based on evolutions of qubit excitation operators. Due to not accounting for fermionic anticommutation, evolutions of qubit excitation operators can be performed by circuits that require asymptotically fewer two-qubit entangling gates. Furthermore, qubit excitation operators preserve many of the physical properties of fermionic excitation operators. Performing a number of classical numerical VQE simulations for small molecules, I show that qubit-excitation-based ans\"atze can approximate molecular electronic wavefunctions almost as accurately as fermionic-excitation-based ans\"atze. Hence, I argue that evolutions of qubit excitation operators are more suitable to construct molecular ans\"atze than evolutions of fermionic excitation operators, especially in the era of NISQ computers. Motivated by the advantage of qubit-excitation-based ans\"atze, I introduce the qubit-excitation-based adaptive variational quantum eigensolver (QEB-ADAPT-VQE). The QEB-ADAPT-VQE belongs to a family of ADAPT-VQE protocols for molecular modelling that grow a problem-tailored ansatz by iteratively appending unitary operators sampled from a predefined finite-size pool of operators. The operator at each iteration is sampled based on an ansatz-growing strategy, which aims to achieve the lowest estimate for the Hamiltonian expectation value at each iteration. In this way, ADAPT-VQE protocols construct shallow-circuit, few-parameter ans\"atze tailored specifically to the molecular systems of interest. In the case of the QEB-ADAPT-VQE, the operator pool is defined by a set of evolutions of single and double qubit excitation operators. I benchmark the performance of the QEB-ADAPT-VQE, by performing classical numerical simulations. I demonstrate that it can construct ans\"atze that are several orders of magnitude more accurate, and require significantly shallower circuits, than standard UCC ans\"atze. I also compare the QEB-ADAPT-VQE against the original fermionic-ADAPT-VQE, which utilizes a pool of fermionic excitation evolutions, and the qubit-ADAPT-VQE, which utilizes a pool of Pauli-string evolutions. I demonstrate that, in terms of circuit efficiency and convergence speed, the QEB-ADAPT-VQE systematically outperforms the qubit-ADAPT-VQE, which to my knowledge was the previous most circuit-efficient, scalable VQE protocol for molecular modeling. The QEB-ADAPT-VQE protocol, therefore represents a significant improvement in the field of VQE protocols for molecular modelling and brings us closer to achieving practical quantum advantage. Lastly, I outline a modified version of the QEB-ADAPT-VQE, the excited-QEB-ADAPT-VQE, designed to estimate energies of excited molecular states. The excited-QEB-ADAPT-VQE is more robust to initial simulation conditions, at the expense of increased computational complexity.
Hardware-efficient empirical variational ansätze for Variational Quantum Eigensolver (VQE) simulations of quantum chemistry often lack a direct connection to classical quantum chemistry methods. In this work, we propose a method to bridge this gap by introducing a novel approach to constructing a starting point for variational quantum circuits, leveraging quantum mutual information from classical quantum chemistry states to design simple yet effective heuristic ansätze with a topology reflecting the molecular system’s correlations. As a first step, we make use of quantum chemistry calculations, such as Mo̷ller–Plesset (MP2) perturbation theory, to initially provide approximate Natural Orbitals, which have been shown to be the best candidate one-electron basis for developing compact empirical wave functions. 1 Second, we evaluate the quantum mutual information matrix, which provides insights about the main correlations between qubits of the quantum circuit, and enables a direct design of entangling blocks for the circuit. The resulting ansatz is then used with a VQE to obtain a short-depth variational ground state of the electronic Hamiltonian. To validate our approach, we perform a comprehensive statistical analysis through simulations of various molecular systems ( H 2, LiH, H 2 O ) and apply it to the more complex NH 3 molecule. The reported results demonstrate that the proposed methodology gives rise to highly effective ansätze, outperforming the standard empirical ladder-entangler ansatz. Overall, our approach can be used as an effective state preparation, providing a promising route for designing efficient variational quantum circuits for large molecular systems.
The ability of quantum computers to overcome the exponential memory scaling of many-body problems is expected to transform quantum chemistry. Quantum algorithms require accurate representations of electronic states on a quantum device, but current approximations struggle to combine chemical accuracy and gate efficiency while preserving physical symmetries, and rely on measurement-intensive adaptive methods that tailor the wave function to each molecule. In this contribution, we present a symmetry-preserving and gate-efficient that provides chemically accurate molecular energies with a well-defined circuit structure. Our approach exploits local qubit connectivity, orbital optimization, and connections with generalized valence bond theory to maximize the accuracy that is obtained with shallow quantum circuits. Numerical simulations for molecules with weak and strong electron correlation, including benzene, water, and the singlet-triplet gap in tetramethyleneethane, demonstrate that chemically accurate energies are achieved with as much as 84% fewer two-qubit gates compared to state-of-the-art adaptive techniques. Published by the American Physical Society 2024
We present a large-scale experimental study of quantum-computing-based molecular simulation carried out on IQM's Sirius 24-qubit superconducting processor, utilizing up to 16 operational qubits. The work employs Sample-based Quantum Diagonalization (SQD) together with the Local Unitary Cluster Jastrow (LUCJ) ansatz to estimate ground-state energies for a set of benchmark molecules, including H2_22​, LiH, BeH2_22​, H2_22​O, and NH3_33​. In addition, we introduce a Linear-CNOT variant of the Unitary Coupled-Cluster Singles and Doubles (LCNot-UCCSD) ansatz within the SQD workflow, trading higher circuit depth for reduced classical preprocessing. A comparison between these ansätze is provided, clarifying their respective strengths, limitations, and suitability for near-term quantum hardware. We further explore potential energy landscapes through 1D scans for H2_22​ and HeH+^++ using both STO-3G and 6-31G basis sets, and for LiH and BeH2_22​ in STO-3G. Extending beyond this, we demonstrate the experimental construction of a full 2D potential energy surface for the water molecule on quantum hardware, mapped over a 32 ×\times× 32 grid in bond length and bond angle. To move beyond small benchmark systems, we combine SQD(LUCJ) with Density Matrix Embedding Theory (DMET) to compute active-space energies for a set of ligand-like molecules, as well as the pharmacologically relevant amantadine system. Across all studies, the majority of quantum-computed energies agree with reference FCI results, as well as with DMET-CASCI energies for embedded systems, to within chemical accuracy for the chosen basis sets. These results demonstrate the reliability of sample-based diagonalization approaches and underscore the potential of hybrid embedding strategies for extending quantum simulations to increasingly complex molecular systems, while also highlighting their practicality on current IQM quantum hardware.