Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Log inSign up
Challenges
Datasets
Workspaces
Papers
Discussions
Leaderboard
Blog
Job Board
Q3AS

© 2026 Aqora Quantum S.A.S.

TermsPrivacyLegal Notice

arXiv:2511.07771

Quantum-centric machine learning for molecular dynamics

Yanxian Tao, Lingyun Wan, Xiongzhi Zeng, Yingdi Jin, Jie Liu, Zhenyu Li, Jinlong Yang

physics.chem-phquant-phSubmitted Nov 11, 2025• Announced Nov 12, 2025• 1 citation
arXivHTMLPDF

Abstract

Accurate and efficient prediction of electronic wavefunctions is central to ab initio molecular dynamics (AIMD) and electronic structure theory. However, conventional ab initio methods require self-consistent optimization of electronic states at every nuclear configuration, leading to prohibitive computational costs, especially for large or strongly correlated systems. Here, we introduce a quantum-centric machine learning (QCML) model-a hybrid quantum-classical framework that integrates parameterized quantum circuits (PQCs) with Transformer-based machine learning to directly predict molecular wavefunctions and quantum observables. By pretraining the Transformer on a diverse dataset of molecules and ansatz types and subsequently fine-tuning it for specific systems, QCML learns transferable mappings between molecular descriptors and PQC parameters, eliminating the need for iterative variational optimization. The pretrained model achieves chemical accuracy in potential energy surfaces, atomic forces, and dipole moments across multiple molecules and ansatzes, and enables efficient AIMD simulations with infrared spectra prediction. This work establishes a scalable and transferable quantum-centric machine learning paradigm, bridging variational quantum algorithms and modern deep learning for next-generation molecular simulation and quantum chemistry applications.

Related papers

Quantum Hardware-Enabled Molecular Dynamics via Transfer Learning

Abid Khan, Prateek Vaish, Yaoqi Pang +8 more

The ability to perform ab initio molecular dynamics simulations using potential energies calculated on quantum computers would allow virtually exact dynamics for chemical and biochemical systems, with substantial impacts on the fields of catalysis and biophysics. However, noisy hardware, the costs of computing gradients, and the number of qubits required to simulate large systems present major challenges to realizing the potential of dynamical simulations using quantum hardware. Here, we demonstrate that some of these issues can be mitigated by recent advances in machine learning. By combining transfer learning with techniques for building machine-learned potential energy surfaces, we propose a new path forward for molecular dynamics simulations on quantum hardware. We use transfer learning to reduce the number of energy evaluations that use quantum hardware by first training models on larger, less accurate classical datasets and then refining them on smaller, more accurate quantum datasets. We demonstrate this approach by training machine learning models to predict a molecule's potential energy using Behler-Parrinello neural networks. When successfully trained, the model enables energy gradient predictions necessary for dynamics simulations that cannot be readily obtained directly from quantum hardware. To reduce the quantum resources needed, the model is initially trained with data derived from low-cost techniques, such as Density Functional Theory, and subsequently refined with a smaller dataset obtained from the optimization of the Unitary Coupled Cluster ansatz. We show that this approach significantly reduces the size of the quantum training dataset while capturing the high accuracies needed for quantum chemistry simulations.

arXiv:2406.08554•Jun 12, 2024•0 citations

SYNERGY BETWEEN QUANTUM COMPUTING AND MACHINE LEARNING IN QUANTUM NEURAL NETWORK

Sadia Rafi, Rana Muhammad Ali Maisam, Anum Zahid +3 more

Machine learning has made significant contributions to the fields of chemistry and materials science, enabling the exploration of vast chemical space through large-scale quantum chemical calculations. These models provide fast and accurate predictions of atomistic chemical properties, but they have limitations when it comes to capturing the electronic degrees of freedom of a molecule. This restricts their application in reactive chemistry and chemical analysis. To address this limitation, we introduce a deep learning framework that predicts the quantum mechanical wavefunction of a molecule in a local basis of atomic orbitals. The wavefunction serves as a foundational representation from which all other ground-state properties can be derived. Our approach maintains complete access to the electronic structure through the wavefunction, while achieving computational efficiency comparable to force-field methods. Moreover, the framework captures quantum mechanics in a form that can be analytically differentiated, allowing for efficient optimization and exploration of chemical systems. We demonstrate the potential of our approach through several examples. By leveraging the predicted wavefunction, we showcase the ability to perform inverse design of molecular structures to target specific electronic property optimizations. This opens exciting avenues for tailoring molecular structures to achieve desired electronic characteristics. Additionally, our framework paves the way for enhanced synergy between machine learning and quantum chemistry, enabling more comprehensive investigations into complex chemical systems.

CENTRAL ASIAN JOURNAL OF MATHEMATICAL THEORY AND COMPUTER SCIENCES•Aug 28, 2023•0 citations

Hybrid AI-Quantum Models for Real-Time Molecular Structure Prediction

Prof. (Dr) MSR Prasad

Hybrid artificial intelligence–quantum (AI–Q) models arise at the intersection of two rapidly advancing computational paradigms, promising unprecedented capabilities for real-time molecular structure prediction. In classical computational chemistry, the accurate determination of ground-state energies and optimized geometries relies on ab initio methods such as density functional theory (DFT) and coupled-cluster approaches, which, while highly precise, exhibit steep polynomial or exponential scaling with system size. Conversely, deep neural networks (DNNs) have demonstrated remarkable success in learning potential energy surfaces (PES) from large datasets, achieving rapid inference but sometimes lacking the ultimate chemical accuracy required for predictive applications in drug discovery or materials design. On the other hand, variational quantum eigensolvers (VQEs) leverage the intrinsic parallelism of quantum hardware to approximate electronic structure problems, yet they remain constrained by qubit coherence times, gate fidelities, and circuit depth limitations inherent to noisy intermediate-scale quantum (NISQ) devices.

World Journal of Future Technologies in Computer Science and Engineering•Jun 9, 2026•0 citations

Advancements in predictive modeling of nuclear magnetic resonance parameters: integrating quantum mechanics, machine learning, and quantum computing

Jonhariono Sihotang, Patrisius Michaud Felix Marsoit

This research explores the integration of quantum mechanics, machine learning, and quantum computing to advance predictive modeling of nuclear magnetic resonance (NMR) parameters. The aim is to develop a hybrid quantum-enhanced machine learning model that combines the accuracy of quantum calculations with the efficiency of machine learning techniques for predicting NMR chemical shifts. The conceptual framework involves quantum mechanical calculations for accurate reference NMR parameters, supervised machine learning models trained on diverse molecular datasets, and hybrid quantum-classical algorithms to leverage quantum computing resources. A simplified numerical example demonstrates the potential of the proposed model for predicting NMR chemical shifts for small molecular systems. The results showcase the model's ability to capture underlying relationships between molecular features and NMR observables, indicating promise for larger and more complex systems. This interdisciplinary approach opens new avenues for advancing NMR spectroscopy and understanding molecular structures, dynamics, and interactions in various scientific domains. The research also discusses challenges and opportunities in integrating quantum mechanics, machine learning, and quantum computing, emphasizing the importance of diverse datasets and quantum algorithm selection. The proposed model holds significant implications for transforming NMR parameter predictions and contributing to chemistry, biochemistry, and materials science research

Vertex•Dec 30, 2022•0 citations

Leveraging Machine Learning to Overcome Limitations in Quantum Algorithms

Sala, Laia Coronas, Parfait Atchade-Adelomou

Quantum Computing (QC) offers outstanding potential for molecular characterization and drug discovery, particularly in solving complex properties like the Ground State Energy (GSE) of biomolecules. However, QC faces challenges due to computational noise, scalability, and system complexity. This work presents a hybrid framework combining Machine Learning (ML) techniques with quantum algorithms$-$Variational Quantum Eigensolver (VQE), Hartree-Fock (HF), and Quantum Phase Estimation (QPE)$-$to improve GSE predictions for large molecules. Three datasets (chemical descriptors, Coulomb matrices, and a hybrid combination) were prepared using molecular features from PubChem. These datasets trained XGBoost (XGB), Random Forest (RF), and LightGBM (LGBM) models. XGB achieved the lowest Relative Error (RE) of $4.41 \pm 11.18\%$ on chemical descriptors, outperforming RF ($5.56 \pm 11.66\%$) and LGBM ($5.32 \pm 12.87\%$). HF delivered exceptional precision for small molecules ($0.44 \pm 0.66\% RE$), while a near-linear correlation between GSE and molecular electron count provided predictive shortcuts. This study demonstrates that integrating QC and ML enhances scalability for molecular energy predictions and lays the foundation for scaling QC molecular simulations to larger systems.

arXiv:2412.11405•Dec 16, 2024•1 citation

Prediction of Molecular Structures and Properties by Using Quantum Technology

Ravuri Krishna

Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.

American Journal of Physical Chemistry•Dec 31, 2025•0 citations
Accurate and efficient prediction of electronic wavefunctions is central to ab initio molecular dynamics (AIMD) and electronic structure theory. However, conventional ab initio methods require self-consistent optimization of electronic states at every nuclear configuration, leading to prohibitive computational costs, especially for large or strongly correlated systems. Here, we introduce a quantum-centric machine learning (QCML) model-a hybrid quantum-classical framework that integrates parameterized quantum circuits (PQCs) with Transformer-based machine learning to directly predict molecular wavefunctions and quantum observables. By pretraining the Transformer on a diverse dataset of molecules and ansatz types and subsequently fine-tuning it for specific systems, QCML learns transferable mappings between molecular descriptors and PQC parameters, eliminating the need for iterative variational optimization. The pretrained model achieves chemical accuracy in potential energy surfaces, atomic forces, and dipole moments across multiple molecules and ansatzes, and enables efficient AIMD simulations with infrared spectra prediction. This work establishes a scalable and transferable quantum-centric machine learning paradigm, bridging variational quantum algorithms and modern deep learning for next-generation molecular simulation and quantum chemistry applications.
The ability to perform ab initio molecular dynamics simulations using potential energies calculated on quantum computers would allow virtually exact dynamics for chemical and biochemical systems, with substantial impacts on the fields of catalysis and biophysics. However, noisy hardware, the costs of computing gradients, and the number of qubits required to simulate large systems present major challenges to realizing the potential of dynamical simulations using quantum hardware. Here, we demonstrate that some of these issues can be mitigated by recent advances in machine learning. By combining transfer learning with techniques for building machine-learned potential energy surfaces, we propose a new path forward for molecular dynamics simulations on quantum hardware. We use transfer learning to reduce the number of energy evaluations that use quantum hardware by first training models on larger, less accurate classical datasets and then refining them on smaller, more accurate quantum datasets. We demonstrate this approach by training machine learning models to predict a molecule's potential energy using Behler-Parrinello neural networks. When successfully trained, the model enables energy gradient predictions necessary for dynamics simulations that cannot be readily obtained directly from quantum hardware. To reduce the quantum resources needed, the model is initially trained with data derived from low-cost techniques, such as Density Functional Theory, and subsequently refined with a smaller dataset obtained from the optimization of the Unitary Coupled Cluster ansatz. We show that this approach significantly reduces the size of the quantum training dataset while capturing the high accuracies needed for quantum chemistry simulations.
Machine learning has made significant contributions to the fields of chemistry and materials science, enabling the exploration of vast chemical space through large-scale quantum chemical calculations. These models provide fast and accurate predictions of atomistic chemical properties, but they have limitations when it comes to capturing the electronic degrees of freedom of a molecule. This restricts their application in reactive chemistry and chemical analysis. To address this limitation, we introduce a deep learning framework that predicts the quantum mechanical wavefunction of a molecule in a local basis of atomic orbitals. The wavefunction serves as a foundational representation from which all other ground-state properties can be derived. Our approach maintains complete access to the electronic structure through the wavefunction, while achieving computational efficiency comparable to force-field methods. Moreover, the framework captures quantum mechanics in a form that can be analytically differentiated, allowing for efficient optimization and exploration of chemical systems. We demonstrate the potential of our approach through several examples. By leveraging the predicted wavefunction, we showcase the ability to perform inverse design of molecular structures to target specific electronic property optimizations. This opens exciting avenues for tailoring molecular structures to achieve desired electronic characteristics. Additionally, our framework paves the way for enhanced synergy between machine learning and quantum chemistry, enabling more comprehensive investigations into complex chemical systems.
Hybrid artificial intelligence–quantum (AI–Q) models arise at the intersection of two rapidly advancing computational paradigms, promising unprecedented capabilities for real-time molecular structure prediction. In classical computational chemistry, the accurate determination of ground-state energies and optimized geometries relies on ab initio methods such as density functional theory (DFT) and coupled-cluster approaches, which, while highly precise, exhibit steep polynomial or exponential scaling with system size. Conversely, deep neural networks (DNNs) have demonstrated remarkable success in learning potential energy surfaces (PES) from large datasets, achieving rapid inference but sometimes lacking the ultimate chemical accuracy required for predictive applications in drug discovery or materials design. On the other hand, variational quantum eigensolvers (VQEs) leverage the intrinsic parallelism of quantum hardware to approximate electronic structure problems, yet they remain constrained by qubit coherence times, gate fidelities, and circuit depth limitations inherent to noisy intermediate-scale quantum (NISQ) devices.
This research explores the integration of quantum mechanics, machine learning, and quantum computing to advance predictive modeling of nuclear magnetic resonance (NMR) parameters. The aim is to develop a hybrid quantum-enhanced machine learning model that combines the accuracy of quantum calculations with the efficiency of machine learning techniques for predicting NMR chemical shifts. The conceptual framework involves quantum mechanical calculations for accurate reference NMR parameters, supervised machine learning models trained on diverse molecular datasets, and hybrid quantum-classical algorithms to leverage quantum computing resources. A simplified numerical example demonstrates the potential of the proposed model for predicting NMR chemical shifts for small molecular systems. The results showcase the model's ability to capture underlying relationships between molecular features and NMR observables, indicating promise for larger and more complex systems. This interdisciplinary approach opens new avenues for advancing NMR spectroscopy and understanding molecular structures, dynamics, and interactions in various scientific domains. The research also discusses challenges and opportunities in integrating quantum mechanics, machine learning, and quantum computing, emphasizing the importance of diverse datasets and quantum algorithm selection. The proposed model holds significant implications for transforming NMR parameter predictions and contributing to chemistry, biochemistry, and materials science research
Quantum Computing (QC) offers outstanding potential for molecular characterization and drug discovery, particularly in solving complex properties like the Ground State Energy (GSE) of biomolecules. However, QC faces challenges due to computational noise, scalability, and system complexity. This work presents a hybrid framework combining Machine Learning (ML) techniques with quantum algorithms−-−Variational Quantum Eigensolver (VQE), Hartree-Fock (HF), and Quantum Phase Estimation (QPE)−-−to improve GSE predictions for large molecules. Three datasets (chemical descriptors, Coulomb matrices, and a hybrid combination) were prepared using molecular features from PubChem. These datasets trained XGBoost (XGB), Random Forest (RF), and LightGBM (LGBM) models. XGB achieved the lowest Relative Error (RE) of 4.41±11.18%4.41 \pm 11.18\%4.41±11.18% on chemical descriptors, outperforming RF (5.56±11.66%5.56 \pm 11.66\%5.56±11.66%) and LGBM (5.32±12.87%5.32 \pm 12.87\%5.32±12.87%). HF delivered exceptional precision for small molecules (0.44±0.66%RE0.44 \pm 0.66\% RE0.44±0.66%RE), while a near-linear correlation between GSE and molecular electron count provided predictive shortcuts. This study demonstrates that integrating QC and ML enhances scalability for molecular energy predictions and lays the foundation for scaling QC molecular simulations to larger systems.
Accurate prediction of molecular structures and properties is vital for chemistry; materials science, and drug discovery, yet classical electronic-structure methods often fail for strongly correlated systems, large basis sets, and complex potential-energy landscapes. Quantum technology encompassing quantum computing, quantum machine learning, and hybrid quantum classical strategies offers a fundamentally new paradigm by encoding many-electron wave functions directly on qubits and exploiting superposition and entanglement to explore exponentially large Hilbert spaces. This review synthesizes recent algorithmic and hardware advances relevant to molecular modelling, including the Variational Quantum Eigensolver (VQE), Quantum Phase Estimation (QPE), quantum unitary coupled-cluster (q-UCC) families, equation-of-motion and subspace methods for excited states, tensor-network hybrids, and quantum kernel and variational QML approaches. We examine noise-aware hybrid workflows, error-mitigation techniques, symmetry-preserving ansätze, and operator-factorization methods that reduce measurement and gate overhead. Representative applications are discussed: ground- and excited-state energy prediction, potential-energy surface mapping, geometry and transition-state optimization, spectroscopic property estimation (IR, UV–Vis, NMR, EPR), and reaction-dynamics scenarios where non-adiabatic effects and conical intersections dominate. Resource estimates and scaling analyses clarify current NISQ limitations qubit counts, circuit depth, shot complexity and delineate the roadmap to fault-tolerant QPE for chemical accuracy. We compare quantum approaches with classical baselines (DFT, CCSD (T), multireference methods), identifying domains where quantum methods already show promise (strong correlation, multi-reference dissociation, spin-state ordering) and where classical methods remain competitive. Finally, we highlight near-term industrial opportunities in drug design, catalysis, CO2 capture, and energy materials, and outline critical research directions: algorithmic reductions in measurement/precision cost, hardware improvements in fidelity and connectivity, scalable ansatz design, and integrated software stacks for reproducible hybrid simulations. Together, these developments indicate that while practical, large-scale quantum advantage for general chemistry remains future work, quantum technologies are rapidly maturing into powerful tools for targeted molecular problems that are intractable with existing classical techniques.