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arXiv:2507.23593

Graph-based block-diagonalization of full configuration interaction Hamiltonian: H$_2$ chains study

Park, Hayun, Hunpyo Lee

Published Jul 31, 2025• 0 citations
arXivHTMLPDF

Abstract

We developed a graph-based block-diagonalization (GBBD) method for the full configuration interaction Hamiltonian of molecular systems to efficiently calculate the exact eigenvalues of low-energy states. In this approach, the non-zero matrix elements of the Hamiltonian are represented as edges on a graph, which naturally decomposes into disconnected clusters. Each cluster corresponds to an independent block in the block-diagonalized form of the Hamiltonian. The eigenvalues in the low-energy sector were obtained by solving the eigenvalue problem for each block matrix and by solving a modified Hamiltonian subject to orthonormality constraints with respect to previously computed lower-energy eigenstates. We applied the GBBD method to linear hydrogen H chains ranging from H$_2$ to H$_{12}$. The results showed excellent agreement with exact ones, confirming both the accuracy and efficiency of the proposed method. Finally, we discussed several physical properties with respect to the number of H$_2$ molecules.

DOI
10.48550/arxiv.2507.23593

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We developed a graph-based block-diagonalization (GBBD) method for the full configuration interaction Hamiltonian of molecular systems to efficiently calculate the exact eigenvalues of low-energy states. In this approach, the non-zero matrix elements of the Hamiltonian are represented as edges on a graph, which naturally decomposes into disconnected clusters. Each cluster corresponds to an independent block in the block-diagonalized form of the Hamiltonian. The eigenvalues in the low-energy sector were obtained by solving the eigenvalue problem for each block matrix and by solving a modified Hamiltonian subject to orthonormality constraints with respect to previously computed lower-energy eigenstates. We applied the GBBD method to linear hydrogen H chains ranging from H2_22​ to H12_{12}12​. The results showed excellent agreement with exact ones, confirming both the accuracy and efficiency of the proposed method. Finally, we discussed several physical properties with respect to the number of H2_22​ molecules.
Development of exponentially scaling methods has seen great progress in tackling larger systems than previously thought possible. One such technique, full configuration interaction quantum Monte Carlo, is a useful algorithm that allows exact diagonalization through stochastically sampling determinants. The method derives its utility from the information in the matrix elements of the Hamiltonian, along with a stochastic projected wave function, to find the important parts of Hilbert space. However, the stochastic representation of the wave function is not required to search Hilbert space efficiently, and here we describe a highly efficient deterministic method that can achieve chemical accuracy for a wide range of systems, including the difficult Cr2 molecule. We demonstrate for systems like Cr2 that such calculations can be performed in just a few cpu hours which makes it one of the most efficient and accurate methods that can attain chemical accuracy for strongly correlated systems. In addition our method also allows efficient calculation of excited state energies, which we illustrate with benchmark results for the excited states of C2.
Development of exponentially scaling methods has seen great progress in tackling larger systems than previously thought possible. One such technique, full configuration interaction quantum Monte Carlo, is a useful algorithm that allows exact diagonalization through stochastically sampling determinants. The method derives its utility from the information in the matrix elements of the Hamiltonian, along with a stochastic projected wave function, to find the important parts of Hilbert space. However, the stochastic representation of the wave function is not required to search Hilbert space efficiently, and here we describe a highly efficient deterministic method that can achieve chemical accuracy for a wide range of systems, including the difficult Cr2 molecule. We demonstrate for systems like Cr2 that such calculations can be performed in just a few cpu hours which makes it one of the most efficient and accurate methods that can attain chemical accuracy for strongly correlated systems. In addition our method also allows efficient calculation of excited state energies, which we illustrate with benchmark results for the excited states of C2.
We propose an efficient deterministic method to calculate the full configuration interaction (FCI) ground state energy. This method leverages the sparseness of the Lanczos basis vectors that span the Krylov subspace associated with the Hamiltonian to rapidly calculate the lowest eigenvalue of the effective Hamiltonian formed in this basis. By iteratively performing the spanning and diagonalization steps, this method is capable of rapidly reaching chemical accuracy for a variety of strongly correlated molecules, including stretched N2_22​ and C2_22​, in merely several tens of iterations. To accelerate our algorithm, we implement parallelized sparse matrix-sparse vector multiplication, which features a novel hashing method that establishes a one-to-one correspondence between the set of full configuration Slater determinants and a set of consecutive integers. A near-linear acceleration was observed.
We present a library of qubit Hamiltonians for molecular quantum simulation that are structurally sparser than conventional Gaussian-basis alternatives by one to three orders of magnitude. The Hamiltonians are constructed from a spectral graph theory framework (GeoVac) that exploits natural coordinate separations in molecular electronic structure, producing block-diagonal electron repulsion integrals and Gaunt-enforced selection rules that persist through Jordan-Wigner encoding. For the composed architecture (PK-partitioned), the composed LiH Hamiltonian is near parity with minimal-basis STO-3G on Pauli count (334 vs. STO-3G's 276 reduced / 907 raw) while using more qubits; the decisive resource advantages are the O(Q2.5)O(Q^{2.5})O(Q2.5) Pauli scaling and a 190××× reduction versus cc-pVDZ. The balanced coupled architecture (PK-free) binds LiH with an FCI minimum at a computed Req=3.227R_{\mathrm{eq}} = 3.227Req​=3.227 bohr (7.0% above the experimental 3.015 bohr) at nmax⁡=2n_{\max}=2nmax​=2 (878 Pauli terms, 30 qubits); a single-point evaluation at the experimental geometry reaches 0.20% energy error at nmax⁡=3n_{\max}=3nmax​=3 (84 qubits) when solved exactly. Chemistry-accuracy scope at nmax⁡=2n_{\max}=2nmax​=2 is row-conditional: first-row hydrides (LiH, BeH2_22​, H2_22​O, …\ldots…) bind with documented potential-energy-surface (PES) topology, while second-row hydrides (NaH and below) exhibit monotone overattraction under every tested configuration — frozen-core balanced, multi-zeta valence, screened cross-center, explicit-core Hartree–Fock — with no interior PES minimum at the qubit-Hamiltonian level. We document this scope boundary empirically in \S(ref); the framework's primary value proposition is structural sparsity with quantitative truncation-convergence rates (Paper 38 state-space GH convergence), not energy-accuracy parity with CCSD(T) on second-row systems. The hamiltonian() registry covers 37 systems (35 composed molecules spanning Z=1Z=1Z=1–56, H through Ba, plus the He and H2_22​ reference atoms), including multi-center systems (CO, N2_22​, F2_22​), mixed frozen-core molecules (NaCl), and the full first transition series as hydrides (ScH through ZnH), with Pauli scaling O(Q2.5)O(Q^{2.5})O(Q2.5) confirmed universal across all three rows, compared to O(Q3.9–4.3)O(Q^{3.9–4.3})O(Q3.9–4.3) for Gaussian baselines. The composed Pauli count is exactly linear in qubit count (coefficient 11.1011.1011.10, exact, for main-group molecules; 9.239.239.23 for ddd-orbital blocks under the pair-diagonal ERI approximation (Sec. (ref))—the exact global-MLM_LML​ rule makes the ddd-block coefficient higher, not lower), so adding atoms to a molecule increases quantum cost linearly. Second- and third-row molecules use analytical frozen cores ([Ne], [Ar], [Ar]3d10d^{10}d10); the frozen-core energy enters only through the identity operator and does not affect quantum measurement cost. Isostructural molecules with frozen cores produce identical Pauli counts across periodic table rows. The Hamiltonians are available as a Python library with Qiskit, OpenFermion, and PennyLane export. GeoVac Paper 20. Part of the GeoVac research corpus (quantum computing group). Code, tests, and the full paper series: https://github.com/jloutey-hash/geovac. Corpus archive DOI: 10.5281/zenodo.20482394. Corpus version at deposit: v4.75.0.
We take the Bose-Hubbard model to illustrate exact diagonalization techniques in a pedagogical way. We follow the road of first generating all the basis vectors, then setting up the Hamiltonian matrix with respect to this basis, and finally using the Lanczos algorithm to solve low lying eigenstates and eigenvalues. Emphasis is placed on how to enumerate all the basis vectors and how to use the hashing trick to set up the Hamiltonian matrix or matrices corresponding to other quantities. Although our route is not necessarily the most efficient one in practice, the techniques and ideas introduced are quite general and may find use in many other problems.