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arXiv:2503.05967 · Journal of Chemical Theory and Computation

Enhancing the Accuracy and Efficiency of Sample-Based Quantum Diagonalization with Phaseless Auxiliary-Field Quantum Monte Carlo

Don Danilov, Javier Robledo Moreno, Kevin J. Sung, Mário Motta, James Shee

Published Nov 3, 2025• 7 citations
arXivHTMLPDF

Abstract

Quantum Selected Configuration Interaction (QSCI) and an extended protocol known as Sample-based Quantum Diagonalization (SQD) have emerged as promising algorithms to solve the electronic Schrödinger equation with noisy quantum computers. In QSCI/SQD a quantum circuit is repeatedly prepared on the quantum device, and measured configurations form a subspace of the many-body Hilbert space in which the Hamiltonian is diagonalized classically. For the dissociation of N 2 and a model [2Fe – 2S] cluster (correlating 10 electrons in 26 orbitals and 30 electrons in 20 orbitals, respectively) we show that a nonperturbative stochastic approach, phaseless auxiliary-field quantum Monte Carlo (ph-AFQMC), using truncated SQD trial wave functions obtained from quantum hardware can recover a substantial amount (e.g., O (100) mHa) of correlation energy. This hybrid quantum-classical combination has the potential to greatly reduce the sampling burden placed on the QSCI/SQD procedure, and is a compelling alternative to recently proposed hybrid ph-AFQMC algorithms that rely on quantum state tomography.

DOI
10.1021/acs.jctc.5c01407

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Quantum Selected Configuration Interaction (QSCI) and an extended protocol known as Sample-based Quantum Diagonalization (SQD) have emerged as promising algorithms to solve the electronic Schrödinger equation with noisy quantum computers. In QSCI/SQD a quantum circuit is repeatedly prepared on the quantum device, and measured configurations form a subspace of the many-body Hilbert space in which the Hamiltonian is diagonalized classically. For the dissociation of N 2 and a model [2Fe – 2S] cluster (correlating 10 electrons in 26 orbitals and 30 electrons in 20 orbitals, respectively) we show that a nonperturbative stochastic approach, phaseless auxiliary-field quantum Monte Carlo (ph-AFQMC), using truncated SQD trial wave functions obtained from quantum hardware can recover a substantial amount (e.g., O (100) mHa) of correlation energy. This hybrid quantum-classical combination has the potential to greatly reduce the sampling burden placed on the QSCI/SQD procedure, and is a compelling alternative to recently proposed hybrid ph-AFQMC algorithms that rely on quantum state tomography.
Quantum-selected configuration interaction (QSCI) methods use a quantum computer to identify dominant electronic configurations in the molecular ground state, while a classical computer diagonalizes the Hamiltonian within the reduced subspace spanned by those configurations. Sample-based quantum diagonalization (SQD), a leading QSCI approach, uses iterative classical post-processing to correct noisy quantum measurement to ensure that the corresponding configurations remain physically sensible. In this work, we show that SQD performance can be strongly influenced by uncontrolled growth of the classical diagonalization subspace. When classical resources are not explicitly constrained, classical uniform random sampling can reproduce SQD benchmarks as noise increases the diversity of sampled configurations. We show any fair benchmarking protocol of SQD must explicitly control diagonalization size over unique samples. We then address the problem of efficiently discovering physically relevant, energy-lowering configurations by introducing a measurement protocol based on non-orthogonal configuration interaction (NOCI). By distributing measurements across orbital bases optimized with respect to the molecular Hamiltonian, we obtain improved sample efficiency relative to measurements performed solely in the Hartree--Fock basis. Importantly, these improvements persist even under fixed classical resource budgets, demonstrating that the resulting configurations are of higher quality rather than being more numerous. Under our proposed benchmarking procedure, we establish measurement-basis engineering as a promising route to improving quantum sampling methods for electronic structure.
We present efficient algorithms for using selected configuration interaction (sCI) trial wave functions in phaseless auxiliary field quantum Monte Carlo (ph-AFQMC). These advances, geared toward optimizing computational performance for longer configuration interaction expansions, allow us to use up to a million configurations in the trial state for ph-AFQMC. In one example, we found the cost of ph-AFQMC per sample to increase only by a factor of about 3 for a calculation with 104 configurations compared to that with a single one, demonstrating the tiny computational overhead due to a longer expansion. This favorable scaling allows us to study the systematic convergence of the phaseless bias in auxiliary field quantum Monte Carlo calculations with an increasing number of configurations and provides a means to gauge the accuracy of ph-AFQMC with other trial states. We also show how the scalability issues of sCI trial states for large system sizes could be mitigated by restricting them to a moderately sized orbital active space and leveraging the near-cancellation of out of active space phaseless errors.
Sample-based quantum diagonalization (SQD) offers a powerful route to accurate quantum chemistry on noisy intermediate-scale quantum (NISQ) devices by combining quantum sampling with classical diagonalization. Here we introduce HSQD, a novel half-qubit SQD approach that halves the qubit requirement for simulating a chemical system and drastically reduces overall circuit depth and gate counts, suppressing hardware noise. When modeling the dissociation of the nitrogen molecule with a (10e, 26o) active space, HSQD matches the accuracy of SQD on IBM quantum hardware using only half the number of qubits and 40% fewer measurements. We further enhance HSQD with a heat-bath configuration interaction (HCI) inspired selection of the samples, forming HCI-HSQD. This yields sub-millihartree accuracy across the N2 potential energy surface and produces subspaces up to 39% smaller than those from classical HCI, showing a significant improvement in the compactness of the ground-state representation. Finally, we demonstrate the scalability of HCI-HSQD using iron-sulfur clusters, reaching active spaces of up to (54e, 36o) while using only half as many qubits as the original SQD. For these systems, HCI-HSQD reduces SQD energy errors by up to 76% for [2Fe-2S] and 26% for [4Fe-4S], while also reducing subspace sizes, halving measurement requirements, and eliminating expensive post-processing. Together, these results establish half-qubit SQD as a noise-resilient and resource-efficient pathway toward practical quantum advantage in strongly correlated chemistry.
Quantum Selected Configuration Interaction (QSCI) methods (also known as Sample-based Quantum Diagonalization, SQD) have emerged as promising near-term approaches to solving the electronic Schrödinger equation with quantum computers. In this work, we perform numerical analysis to show that QSCI methods face critical limitations that severely hinder their practical applicability in chemistry. Using the nitrogen molecule and the iron-sulfur cluster [2Fe-2S] as examples, we demonstrate that while QSCI can, in principle, yield high-quality configuration interaction (CI) expansions similar to classical SCI heuristics in some cases, the method struggles with inefficiencies in finding new determinants as sampling repeatedly selects already seen configurations. This inefficiency becomes especially pronounced when targeting high-accuracy results or sampling from an approximate ansatz. In cases where the sampling problem is not present, the resulting CI expansions are less compact than those generated from classical heuristics, rendering QSCI an overall more expensive method. Our findings suggest a significant drawback in QSCI methods when sampling from the ground-state distribution as the inescapable trade-off between finding sufficiently many determinants and generating compact, accurate CI expansions. This ultimately hinders utility in quantum chemistry applications, as QSCI falls behind more efficient classical counterparts.
Sampling-based quantum diagonalization method exploits Quantum-centric supercomputing platforms to sample bitstrings for Hamiltonian projection on a quantum computer, and then classically diagonalize the Hamiltonian to estimate the eigenvalues and eigenvectors. In current quantum devices an algorithm is useful when shallow quantum circuits with error mitigation support can discover better results while having either a proof of convergence or some method to explain trust in experiment. In this paper, we introduce DF-SQD, a hybrid algorithm that derives deterministic auxiliary-field circuits from selected double-factorization leaves of the two-electron tensor. The circuits propose occupation-number configurations, while selected configuration interaction evaluates the original active-space Hamiltonian and can recentre subsequent proposal rounds. On N2 (32 qubits; 6-31G basis) and a 40-qubit [Fe2S2(SCH3)4]2- active-space Hamiltonian, we show that DF-SQD improves the energy obtained from sampled determinant spaces while using shallow number-preserving circuits in both simulator and hardware runs. For N2, DF-SQD is 45x more accurate with a 11.23\% smaller subspace, and due to its ability to sample better bitstrings at lesser shots it is 2.93x faster than SQD in quantum devices. For the iron-sulfur cluster, DF-SQD generated a subspace dimension of 221M with 400K shots, while SQD needed 1.5M shots to generate a 238M subspace, thus we have better subspace recovery evident from the hardware at 3.75x reduced shots. At a matched 50M subspace dimension, DF-SQD is 1.32x more accurate (achieves a 24.5\% relative error reduction over standard SQD). So overall, our method is able to discover better results with shallower circuits, is sample efficient, uses configuration recovery (so has targeted error mitigation) and we have empirical convergence observation.
The phaseless auxiliary-field quantum Monte Carlo (ph-AFQMC) method is a stochastic imaginary-time projection method for computing ground-state properties of strongly correlated quantum systems, whose accuracy depends critically on the trial wavefunction. We present a benchmarking study of trial wavefunctions prepared using parameterized quantum circuits, spanning unitary coupled cluster (UCC), Hamiltonian-informed, Jastrow-inspired, and adaptively constructed ansatzes, and evaluate their accuracy, expressibility, and resource requirements within the quantum-computing-enhanced AFQMC (QC-AFQMC) framework. Trial states are prepared with GPU-accelerated statevector simulations using CUDA-Q and tested on stretched linear hydrogen chains and nine closed-shell molecules at equilibrium with varying static correlation. We find that at similar parameter counts, ph-AFQMC largely removes differences between families for weakly and moderately correlated systems: every trial yields a ph-AFQMC energy within chemical accuracy despite trial energy errors spanning nearly three orders of magnitude, whereas ansatz choice becomes consequential as static correlation grows. Our results indicate that trial variational energy is not always a reliable indicator of ph-AFQMC quality, and that adding variational parameters can lower the trial energy while degrading the ph-AFQMC energy. Across our benchmark systems, trial fidelity ranks trials more reliably than variational energy, and for spin-contaminated trials, the singlet-projected fidelity is more reliable than unprojected fidelity. The UCCSD ansatz initialized from unrestricted CCSD amplitudes provides a robust and inexpensive-to-optimize baseline across benchmark systems, with circuit depth as its principal limitation, while adaptive and compact layered ansatzes remain competitive in accuracy under strong correlation with substantially shallower circuits.