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arXiv:2410.18910 · Journal of Chemical Theory and Computation

Characterizing Conical Intersections of Nucleobases on Quantum Computers

Yuchen Wang, Cameron Cianci, Irma Avdic, Rishab Dutta, Samuel Warren, Brandon Allen, Nam P. Vu, Léa Ferreira dos Santos, Víctor S. Batista, David A. Mazziotti

Published Jan 28, 2025• 6 citations
arXivHTMLPDF

Abstract

Hybrid quantum-classical computing algorithms offer significant potential for accelerating the calculation of the electronic structure of strongly correlated molecules. In this work, we present the first quantum simulation of conical intersections (CIs) in a biomolecule, cytosine, using a superconducting quantum computer. We apply the contracted quantum eigensolver (CQE)─with comparisons to conventional variational quantum deflation (VQD)─to compute the near-degenerate ground and excited states associated with the conical intersection, a key feature governing the photostability of DNA and RNA. The CQE is based on an exact ansatz for many-electron molecules in the absence of noise─a critically important property for resolving strongly correlated states at CIs. Both methods demonstrate promising accuracy when compared with exact diagonalization, even on noisy intermediate-scale quantum computers, highlighting their potential for advancing the understanding of photochemical and photobiological processes. The ability to simulate these intersections is critical for advancing our knowledge of biological processes like DNA repair and mutation, with potential implications for molecular biology and medical research.

DOI
10.1021/acs.jctc.4c01434

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Hybrid quantum-classical computing algorithms offer significant potential for accelerating the calculation of the electronic structure of strongly correlated molecules. In this work, we present the first quantum simulation of conical intersections (CIs) in a biomolecule, cytosine, using a superconducting quantum computer. We apply the contracted quantum eigensolver (CQE)─with comparisons to conventional variational quantum deflation (VQD)─to compute the near-degenerate ground and excited states associated with the conical intersection, a key feature governing the photostability of DNA and RNA. The CQE is based on an exact ansatz for many-electron molecules in the absence of noise─a critically important property for resolving strongly correlated states at CIs. Both methods demonstrate promising accuracy when compared with exact diagonalization, even on noisy intermediate-scale quantum computers, highlighting their potential for advancing the understanding of photochemical and photobiological processes. The ability to simulate these intersections is critical for advancing our knowledge of biological processes like DNA repair and mutation, with potential implications for molecular biology and medical research.
In this paper, we investigate the electronic structure of methanimine (CH 2 NH) and water (H 2 O) molecules in an effort to locate conical intersections (CIs) using variational quantum algorithms. Our approach implements and compares a range of hybrid quantum-classical methods, including the variational quantum eigensolver (VQE), variational quantum deflation (VQD), VQE with automatically-adjusted constraints (VQE-AC) and we explore molecular configurations of interest using a state-average (SA) approach. Exact diagonalization is employed as the classical benchmark to evaluate the accuracy of the quantum algorithms. We perform simulations across a range of molecular geometries, basis sets and active spaces to compare each algorithm’s performance and accuracy, and to enhance the detectability of CIs. This work confirms the quantum variational algorithms’ capability of describing CIs in both molecules, as long as appropriate active spaces and geometries of the molecule are chosen. We also compare the accuracy and reliability of VQE-based methods for computing excited states with classical benchmark methods, and we demonstrate good agreement within desired regions.
We explore the simulation of conical intersections (CIs) on quantum devices, setting the groundwork for potential applications in nonadiabatic quantum dynamics within molecular systems. The intersecting potential energy surfaces of H3+_{3}^{+}3+​ are computed from a variance-based contracted quantum eigensolver. We show how the CIs can be correctly described on quantum devices using wavefunctions generated by the anti-Hermitian contracted Schr{ö}dinger equation ansatz, which is a unitary transformation of wavefunctions that preserves the topography of CIs. A hybrid quantum-classical procedure is used to locate the seam of CIs. Additionally, we discuss the quantum implementation of the adiabatic to diabatic transformation and its relation to the geometric phase effect. Results on noisy intermediate-scale quantum devices showcase the potential of quantum computers in dealing with problems in nonadiabatic chemistry.
Conical intersections (CIs) are pivotal in many photochemical processes. Traditional quantum chemistry methods, such as the state-average multiconfigurational methods, face computational hurdles in solving the electronic Schrödinger equation within the active space on classical computers. While quantum computing offers a potential solution, its feasibility in studying CIs, particularly on real quantum hardware, remains largely unexplored. Here, we present the first successful realization of a hybrid quantum-classical state-average complete active space self-consistent field method based on the variational quantum eigensolver (VQE-SA-CASSCF) on a superconducting quantum processor. This approach is applied to investigate CIs in two prototypical systems─ethylene (C 2 H 4 ) and triatomic hydrogen (H 3 ). We illustrate that VQE-SA-CASSCF, coupled with ongoing hardware and algorithmic enhancements, can lead to a correct description of CIs on existing quantum devices. These results lay the groundwork for exploring the potential of quantum computing to study CIs in more complex systems in the future.
Abstract In the noisy intermediate-scale quantum (NISQ) era, solving the electronic structure problem from chemistry is considered as the ‘killer application’ for near-term quantum devices. In spite of the success of variational hybrid quantum/classical algorithms in providing accurate energy profiles for small molecules, careful considerations are still required for the description of complicated features of potential energy surfaces. Because the current quantum resources are very limited, it is common to focus on a restricted part of the Hilbert space (determined by the set of active orbitals). While physically motivated, this approximation can severely impact the description of these complicated features. A perfect example is that of conical intersections (i.e. a singular point of degeneracy between electronic states), which are of primary importance to understand many prominent reactions. Designing active spaces so that the improved accuracy from a quantum computer is not rendered useless is key to finding useful applications of these promising devices within the field of chemistry. To answer this issue, we introduce a NISQ-friendly method called ‘state-averaged orbital-optimized variational quantum eigensolver’ which combines two algorithms: (1) a state-averaged orbital-optimizer, and (2) a state-averaged VQE. To demonstrate the success of the method, we classically simulate it on a minimal Schiff base model (namely the formaldimine molecule CH 2 NH) relevant also for the photoisomerization in rhodopsin—a crucial step in the process of vision mediated by the presence of a conical intersection. We show that merging both algorithms fulfil the necessary condition to describe the molecule’s conical intersection, i.e. the ability to treat degenerate (or quasi-degenerate) states on the same footing.
are computed from a variance-based contracted quantum eigensolver. We show how the CIs can be correctly described on quantum devices using wavefunctions generated by the anti-Hermitian contracted Schrödinger equation ansatz, which is a unitary transformation of wavefunctions that preserves the topography of CIs. A hybrid quantum-classical procedure is used to locate the seam of CIs. Additionally, we discuss the quantum implementation of the adiabatic to diabatic transformation and its relation to the geometric phase effect. Results on noisy intermediate-scale quantum devices showcase the potential of quantum computers in dealing with problems in nonadiabatic chemistry.
Abstract In this Perspective, we discuss how quantum computers may advance the simulation of nonadiabatic molecular dynamics, a framework central to describing excited-state processes in photochemistry, biology, and materials science. Classical approaches span from exponentially scaling full quantum dynamics to more approximate mixed quantum–classical techniques such as surface hopping and Ehrenfest dynamics. Hybrid quantum–classical algorithms – particularly those based on the variational quantum eigensolver – offer a transformative alternative by providing access to the key electronic properties needed to drive nonadiabatic molecular dynamics simulations, including energies, gradients, and nonadiabatic couplings. We examine recent proof-of-principle quantum simulations of reduced model systems which, despite being restricted to small molecules and limited active spaces due to constraints of qubit number and device noise, already showcase the potential of quantum devices to capture phenomena such as conical intersections and ultrafast relaxation. Although practical applications are not yet feasible in the present noisy intermediate-scale quantum era, these efforts underline the conceptual and methodological advances of quantum algorithms paving the way for large-scale quantum simulations of nonadiabatic processes. Framed within the 2025 International Year of Quantum Science and Technology, such progress exemplifies how quantum computing may open new horizons for chemistry and beyond.