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arXiv:2409.06146 · Machine Learning Science and Technology

Configuration interaction guided sampling with interpretable restricted Boltzmann machine

Jorge I. Hernandez-Martinez, Andres Méndez-Vázquez, Gerardo Rodriguez‐Hernandez, Sandra Leticia Juárez-Osorio

Published Oct 6, 2025• 1 citation
arXivHTMLPDF

Abstract

Abstract We propose a data-driven approach using a restricted Boltzmann machine (RBM) to solve the Schrödinger equation in configuration space. Traditional configuration interaction (CI) methods construct the wavefunction as a linear combination of Slater determinants, but this becomes computationally expensive due to the factorial growth in the number of configurations. Our approach extends the use of a generative model such as the RBM by incorporating a taboo list strategy to enhance efficiency and convergence. The RBM is used to efficiently identify and sample the most significant determinants, thus accelerating convergence and substantially reducing computational cost. This method achieves up to 99.99% of the correlation energy while using up to four orders of magnitude fewer determinants compared to full CI calculations and up to two orders of magnitude fewer than previous state of the art methods. Beyond efficiency, our analysis reveals that the RBM learns electron distributions over molecular orbitals by capturing quantum patterns that resemble radial distribution functions linked to molecular bonding. This suggests that the learned pattern is interpretable, highlighting the potential of machine learning for explainable quantum chemistry

DOI
10.1088/2632-2153/ae0fd5

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Abstract We propose a data-driven approach using a restricted Boltzmann machine (RBM) to solve the Schrödinger equation in configuration space. Traditional configuration interaction (CI) methods construct the wavefunction as a linear combination of Slater determinants, but this becomes computationally expensive due to the factorial growth in the number of configurations. Our approach extends the use of a generative model such as the RBM by incorporating a taboo list strategy to enhance efficiency and convergence. The RBM is used to efficiently identify and sample the most significant determinants, thus accelerating convergence and substantially reducing computational cost. This method achieves up to 99.99% of the correlation energy while using up to four orders of magnitude fewer determinants compared to full CI calculations and up to two orders of magnitude fewer than previous state of the art methods. Beyond efficiency, our analysis reveals that the RBM learns electron distributions over molecular orbitals by capturing quantum patterns that resemble radial distribution functions linked to molecular bonding. This suggests that the learned pattern is interpretable, highlighting the potential of machine learning for explainable quantum chemistry
Generative machine learning models like the Restricted Boltzmann Machine (RBM) provide a practical approach for ansatz construction within the quantum computing framework. This work introduces a method that efficiently leverages RBM and many-body perturbative measures to build a compact chemistry-inspired ansatz for determining accurate molecular energetics. By training on low-rank determinants derived from an approximate wave function, RBM predicts the key high-rank determinants that dominate the ground-state wave function. A shallow depth ansatz is constructed to explicitly incorporate these dominant determinants after dynamically decomposing them into low-rank components and applying many-body perturbative measures for further screening. The method requires no additional measurements beyond the initial training phase. Moreover, it incorporates Bayesian hyperparameter optimization for the RBM, ensuring efficient performance with minimal training data during its limited usage. This approach facilitates the efficient computation of molecular properties, paving the way for exploring new chemical phenomena with near-term quantum computers.
We present a novel quantum generative framework based on Quantum Long Short-Term Memory (QLSTM) networks to optimize the sampling of Slater determinants in Full Configuration Interaction (FCI), a key method in quantum chemistry for solving the Schrödinger equation. Our model employs variational quantum circuits to learn an approximate distribution over the configuration space, guiding the generation of new, physically meaningful determinants. This distribution reflects the correlations among significant electronic configurations, allowing for a guided exploration of the determinant space and accelerating convergence toward reference energies. By framing determinant selection as a generative modeling task, our approach contributes to the emerging field of quantum generative AI applied to many-body systems. Implemented using Pennylane and accelerated with JAX, the QLSTM model converges faster than both classical LSTM and random baselines. Notably, it exhibits stable and consistent convergence across different hyperparameter settings, suggesting that the model captures an underlying physical structure rather than overfitting to specific training conditions. Our results demonstrate the scalability and physical consistency of hybrid quantum-classical generative models for quantum chemistry tasks.
Sample-based Quantum Diagonalization (SQD), an extension of Quantum Selected Configuration Interaction (QSCI), has emerged as a promising hybrid quantum-classical paradigm for computing molecular ground state energies. By leveraging quantum sampling instead of variational optimization, QSCI avoids barren plateaus and enables direct reconstruction of correlated electronic wavefunctions. However, existing configuration recovery techniques primarily enforce symmetry constraints without guaranteeing optimal selection of the most physically relevant configurations, often leading to unnecessarily large subspaces and increased classical diagonalization costs. In this work, we introduce a machine-learned compact subspace generation protocol based on Restricted Boltzmann Machines (RBMs), termed QSCI-RBM, and integrate it within the Density Matrix Embedding Theory (DMET) framework. The RBM is trained on quantum-sampled configurations to learn the underlying probability distribution of dominant determinants, enabling the targeted generation of high-probability configurations. We apply this framework to the simulation of a protein-ligand complex involving the inhibitor Carmofur bound to the SARS-CoV-2 main protease (MproM^{\text{pro}}Mpro). Our results demonstrate that DMET-QSCI-RBM achieves energies within the chemical accuracy threshold by accessing only approximately 4% of the configuration subspace. In contrast, standard DMET-SQD simulations failed to reach chemical accuracy while accessing up to 20% of the subspace, even as the chemical potential itself nearly converged. These findings highlight that RBM-assisted configuration generation produces significantly more compact subspaces while preserving physical accuracy, thereby reducing classical computational overhead and enabling the scalable quantum embedding simulation of complex biological systems.
Selected configuration interaction methods achieve near-exact electronic structure calculations by iteratively constructing compact variational spaces, but their efficiency depends critically on the heuristics used to identify important determinants. Here, we introduce a data-driven selection framework that recasts determinant importance as a binary classification task and integrates a neural-network classifier into the iterative CI workflow through an active-learning loop. At each iteration, a random subset of candidate determinants is labelled via temporary diagonalisation, and the trained classifier guides selection of the remaining configurations. We demonstrate the utility of this framework for both classical and quantum CI methods by calculating the ground-state energy of a diatomic molecule. Our method achieves result parity with traditional configuration interaction methods at substantially lower computational cost: roughly a ×5\times 5×5 reduction in memory and per-iteration cost for the classical cHCI variant, and convergence in markedly fewer iterations for the quantum-classical cSQD variant. These results establish classifier-assisted determinant selection as a lightweight, method-agnostic tool for compressing variational spaces and accelerating both classical and hybrid quantum-classical configuration interaction algorithms.
Quantum many-body calculations are fundamentally limited by the exponential growth of the configuration space, making accurate treatment of strongly correlated systems computationally prohibitive. Here we present the Generative Transformer Neural Network Selected Configuration Interaction (GTNN-SCI), a Transformer-based machine learning approach that generatively samples important configurations to accelerate many-body quantum chemistry calculations. By leveraging the Transformer architecture’s self-attention mechanism to capture long-range electron correlations, GTNN-SCI achieves up to 10× speedup compared to state-of-the-art neural network methods while maintaining high accuracy. We demonstrate the efficacy of GTNN-SCI by calculating correlation and binding energies for representative molecules including N 2, H 2 O, and C 2 using both Gaussian (cc-pVDZ) and plane-wave basis sets, achieving faster convergence and lower energies than previously reported neural network-based selected CI techniques. Most significantly, our generative approach identifies higher-order excitations missed by conventional coupling schemes, yielding lower variational energies than established methods including heat-bath CI. This capability enables GTNN-SCI to accurately treat the strongly correlated [Fe 2 S 2 (SCH 3 ) 4 ] 2– ([2Fe–2S]) cluster system, achieving ground-state energies within chemical accuracy of DMRG benchmarks, whereas conventional selected CI methods have failed on this system. The GTNN-SCI method thus combines modern deep learning with high-performance electronic structure computation, providing an efficient and precise avenue for solving the electronic Schrödinger equation in challenging molecular systems.
Directly solving the full electron-nuclear Schrödinger equation remains one of the grand challenges in quantum mechanics. Here, we propose a quantum-chemically motivated orbital-based neural network wavefunction ansatz with explicit many-body electron-electron correlation terms, with parameters depending on the entire electron-nuclear configuration, enabling an accurate description of strongly correlated and/or multi-reference electronic structures by a single Slater-determinant across a broad nuclear configuration space. To train this wavefunction, we further develop an efficient hybrid optimization strategy that combines the variational Monte Carlo technique with local-energy constraints, mitigating the intrinsic sampling bias of the former and considerably reducing the statistical error. These advances are embedded in a unified neural network framework, Schrödinger, enabling the determination of globally accurate potential energy surfaces with a single training for systems ranging from strongly correlated diatomic molecules, triatomic reactions containing conical intersections, to polyatomic multi-reference molecules. This work offers a practical machine-learning tool for solving the electron-nuclear Schrödinger equation and capturing full quantum effects beyond the Born-Oppenheimer approximation.